Wall clock time and date at job start Wed Apr 1 2020 00:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47452 * 2 1 4 4 O 1.42891 * 109.47388 * 239.99381 * 2 1 3 5 5 C 1.35909 * 116.99888 * 82.97699 * 4 2 1 6 6 C 1.39142 * 120.47327 * 354.63879 * 5 4 2 7 7 C 1.38540 * 118.37095 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22379 * 0.02562 * 7 6 5 9 9 N 1.31837 * 120.88678 * 359.97438 * 8 7 6 10 10 C 1.31847 * 121.78309 * 359.70004 * 9 8 7 11 11 C 1.50710 * 109.46763 * 119.99513 * 2 1 3 12 12 O 1.21275 * 119.99903 * 112.66829 * 11 2 1 13 13 N 1.34780 * 119.99697 * 292.66683 * 11 2 1 14 14 C 1.46925 * 120.62332 * 175.26704 * 13 11 2 15 15 C 1.53196 * 108.77270 * 126.41681 * 14 13 11 16 16 C 1.53039 * 109.31641 * 54.62956 * 15 14 13 17 17 C 1.53036 * 109.53646 * 298.63962 * 16 15 14 18 18 H 1.09000 * 109.52885 * 301.38917 * 17 16 15 19 19 C 1.53000 * 109.49732 * 181.31551 * 17 16 15 20 20 N 1.46505 * 109.47425 * 65.15441 * 19 17 16 21 21 C 1.36930 * 119.99954 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00224 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99858 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99936 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00075 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47165 * 270.00055 * 25 23 21 27 27 H 1.48496 * 109.47338 * 30.00006 * 25 23 21 28 28 H 1.48497 * 109.47028 * 150.00261 * 25 23 21 29 29 C 1.46919 * 120.63300 * 355.28773 * 13 11 2 30 30 H 1.09003 * 109.47606 * 305.53282 * 1 2 3 31 31 H 1.09008 * 109.46640 * 65.52831 * 1 2 3 32 32 H 1.09003 * 109.47509 * 185.52667 * 1 2 3 33 33 H 1.07997 * 120.81266 * 0.03036 * 6 5 4 34 34 H 1.08002 * 120.38603 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.55091 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.65827 * 180.28717 * 10 9 8 37 37 H 1.08995 * 109.58731 * 246.19736 * 14 13 11 38 38 H 1.09000 * 109.59150 * 6.62817 * 14 13 11 39 39 H 1.08997 * 109.49860 * 174.58811 * 15 14 13 40 40 H 1.09007 * 109.49782 * 294.64577 * 15 14 13 41 41 H 1.08991 * 109.46252 * 178.61401 * 16 15 14 42 42 H 1.09003 * 109.45711 * 58.65544 * 16 15 14 43 43 H 1.09002 * 109.46980 * 305.15923 * 19 17 16 44 44 H 1.09000 * 109.47469 * 185.16593 * 19 17 16 45 45 H 0.97002 * 119.99411 * 0.02562 * 20 19 17 46 46 H 0.97002 * 119.99460 * 359.97438 * 24 23 21 47 47 H 1.09002 * 109.58381 * 113.80217 * 29 13 11 48 48 H 1.09001 * 109.70470 * 353.44846 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1666 5 6 2.0724 0.0515 -2.3141 6 6 1.5847 1.3540 -2.3548 7 6 1.6737 2.0533 -3.5474 8 6 2.2390 1.4391 -4.6495 9 7 2.6917 0.2030 -4.5774 10 6 2.6317 -0.4944 -3.4601 11 6 2.0322 -0.7104 1.2306 12 8 2.6159 -1.7681 1.1244 13 7 1.8327 -0.1701 2.4492 14 6 2.2237 -0.8983 3.6639 15 6 3.1284 0.0035 4.5096 16 6 2.4146 1.3310 4.7748 17 6 2.1357 2.0365 3.4457 18 1 3.0748 2.2059 2.9190 19 6 1.4515 3.3785 3.7137 20 7 2.3736 4.2622 4.4315 21 6 1.9783 5.5256 4.7814 22 1 0.9866 5.8706 4.5285 23 6 2.8522 6.3630 5.4610 24 7 4.0610 5.9428 5.7687 25 14 2.3127 8.0864 5.9389 26 1 2.6505 9.0321 4.8449 27 1 0.8458 8.0999 6.1695 28 1 3.0130 8.4974 7.1822 29 6 1.2197 1.1579 2.5880 30 1 -0.3634 0.5972 0.8363 31 1 -0.3633 0.4257 -0.9354 32 1 -0.3634 -1.0229 0.0990 33 1 1.1477 1.8087 -1.4781 34 1 1.3050 3.0662 -3.6156 35 1 2.3106 1.9793 -5.5820 36 1 3.0172 -1.5030 -3.4383 37 1 1.3333 -1.1610 4.2349 38 1 2.7645 -1.8038 3.3890 39 1 3.3476 -0.4875 5.4577 40 1 4.0588 0.1910 3.9734 41 1 3.0461 1.9650 5.3970 42 1 1.4727 1.1403 5.2893 43 1 0.5588 3.2169 4.3180 44 1 1.1704 3.8387 2.7664 45 1 3.2644 3.9524 4.6582 46 1 4.3409 5.0477 5.5208 47 1 0.2473 1.0627 3.0713 48 1 1.0959 1.6102 1.6040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690423128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:47 Heat of formation + Delta-G solvation = -44.476134 kcal Electronic energy + Delta-G solvation = -28958.890167 eV Core-core repulsion = 25013.652376 eV Total energy + Delta-G solvation = -3945.237791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.14139 -41.22119 -39.53518 -38.70295 -36.80068 -34.71066 -34.02444 -33.23789 -32.46965 -31.43129 -30.98235 -27.19416 -26.92960 -25.58572 -24.76357 -24.70748 -24.00159 -22.77843 -21.42414 -20.31492 -19.65068 -19.38307 -18.32786 -17.90679 -17.52132 -17.07529 -16.75305 -16.67454 -16.13903 -15.89426 -15.69268 -15.55384 -15.37069 -15.20683 -14.83091 -14.68349 -14.50973 -14.18116 -14.00596 -13.94503 -13.62685 -13.42739 -13.31070 -12.97675 -12.73391 -12.65396 -12.61119 -12.39286 -12.18417 -11.89999 -11.85529 -11.68914 -11.59587 -11.22755 -10.97467 -10.89128 -10.75222 -10.62309 -9.82732 -9.51758 -9.08125 -8.37730 -5.31716 0.10648 0.18674 1.26324 1.35461 1.60113 1.70278 1.84047 2.24473 2.72876 2.76112 3.10225 3.41411 3.45002 3.53774 3.58399 3.67392 3.70227 3.75830 3.81517 3.86247 3.92977 4.10063 4.17174 4.24566 4.28060 4.30900 4.40641 4.52525 4.52921 4.56730 4.67492 4.74234 4.75160 4.83288 4.87741 4.97237 5.02853 5.06164 5.07797 5.12416 5.26482 5.32923 5.38849 5.44038 5.61435 6.04110 6.18367 6.50952 6.88755 6.92535 7.11351 8.01997 8.12805 9.14308 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.002901 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.671791 B = 9650.084117 C =11547.033510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 H 0.113 0.887 4 O -0.303 6.303 5 C 0.067 3.933 6 C -0.169 4.169 7 C -0.123 4.123 8 C 0.049 3.951 9 N -0.472 5.472 10 C 0.055 3.945 11 C 0.519 3.481 12 O -0.566 6.566 13 N -0.598 5.598 14 C 0.114 3.886 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.100 4.100 18 H 0.056 0.944 19 C 0.164 3.836 20 N -0.757 5.757 21 C -0.329 4.329 22 H 0.071 0.929 23 C -0.107 4.107 24 N -0.979 5.979 25 Si 1.128 2.872 26 H -0.286 1.286 27 H -0.270 1.270 28 H -0.297 1.297 29 C 0.114 3.886 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.359 0.641 46 H 0.243 0.757 47 H 0.104 0.896 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -11.734 -14.532 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.005 3.995 3 H 0.130 0.870 4 O -0.215 6.215 5 C 0.019 3.981 6 C -0.195 4.195 7 C -0.142 4.142 8 C -0.108 4.108 9 N -0.181 5.181 10 C -0.102 4.102 11 C 0.307 3.693 12 O -0.444 6.444 13 N -0.331 5.331 14 C -0.008 4.008 15 C -0.164 4.164 16 C -0.145 4.145 17 C -0.120 4.120 18 H 0.074 0.926 19 C 0.037 3.963 20 N -0.402 5.402 21 C -0.461 4.461 22 H 0.088 0.912 23 C -0.298 4.298 24 N -0.627 5.627 25 Si 0.953 3.047 26 H -0.213 1.213 27 H -0.195 1.195 28 H -0.224 1.224 29 C -0.008 4.008 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.189 0.811 35 H 0.202 0.798 36 H 0.179 0.821 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.191 0.809 46 H 0.054 0.946 47 H 0.122 0.878 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.031 -11.444 -14.603 21.091 hybrid contribution 0.025 -1.011 0.356 1.072 sum -10.005 -12.454 -14.248 21.406 Atomic orbital electron populations 1.22446 0.89916 1.04852 1.05904 1.22384 0.97692 0.96927 0.82480 0.86976 1.86181 1.81289 1.38483 1.15507 1.20336 0.97798 0.92383 0.87569 1.22127 1.02621 0.93366 1.01409 1.22420 0.97533 1.02322 0.91934 1.23254 0.96224 0.90793 1.00483 1.67753 1.15776 1.08946 1.25615 1.22315 0.99947 1.01417 0.86558 1.20420 0.78810 0.85305 0.84815 1.90704 1.42618 1.24662 1.86457 1.48024 1.60923 1.19018 1.05119 1.21721 0.99806 0.94963 0.84288 1.21864 0.98104 0.95794 1.00654 1.21454 1.01093 0.95531 0.96382 1.21572 0.99033 0.94423 0.96977 0.92598 1.20709 0.92302 0.88556 0.94700 1.42602 1.14650 1.13404 1.69520 1.20416 1.00237 0.92270 1.33151 0.91150 1.27161 0.94619 1.08485 0.99537 1.70976 1.20147 1.19553 1.52031 0.82611 0.75164 0.70891 0.75997 1.21258 1.19525 1.22366 1.22016 0.96580 0.80365 1.01875 0.87515 0.89148 0.91267 0.82074 0.81054 0.79838 0.82083 0.88750 0.90068 0.89017 0.93259 0.93910 0.90596 0.95202 0.95274 0.80872 0.94633 0.87824 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.76 71.98 0.63 -1.59 16 2 C 0.06 1.25 1.80 29.85 0.05 1.30 16 3 H 0.11 1.80 5.42 -2.38 -0.01 1.79 16 4 O -0.30 -7.38 9.36 -73.59 -0.69 -8.07 16 5 C 0.07 1.42 6.57 22.60 0.15 1.57 16 6 C -0.17 -2.70 8.22 22.56 0.19 -2.51 16 7 C -0.12 -1.64 10.11 22.35 0.23 -1.41 16 8 C 0.05 0.79 11.18 84.70 0.95 1.74 16 9 N -0.47 -10.32 10.35 -195.44 -2.02 -12.35 16 10 C 0.06 1.25 11.14 84.80 0.94 2.19 16 11 C 0.52 13.01 7.06 87.66 0.62 13.63 16 12 O -0.57 -19.11 15.93 15.92 0.25 -18.86 16 13 N -0.60 -12.60 2.97 -818.92 -2.43 -15.03 16 14 C 0.11 2.34 6.44 86.36 0.56 2.90 16 15 C -0.13 -2.83 6.08 30.67 0.19 -2.65 16 16 C -0.11 -2.82 5.06 30.62 0.15 -2.66 16 17 C -0.10 -2.64 2.37 -10.72 -0.03 -2.67 16 18 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 19 C 0.16 5.55 5.65 86.38 0.49 6.04 16 20 N -0.76 -35.68 5.32 -343.44 -1.83 -37.51 16 21 C -0.33 -17.64 9.99 84.04 0.84 -16.80 16 22 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 23 C -0.11 -6.03 5.50 84.86 0.47 -5.57 16 24 N -0.98 -60.21 13.70 21.65 0.30 -59.92 16 25 Si 1.13 50.31 29.92 68.60 2.05 52.37 16 26 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 29 C 0.11 2.04 4.36 86.36 0.38 2.42 16 30 H 0.11 0.91 6.06 -2.39 -0.01 0.90 16 31 H 0.09 0.94 6.78 -2.38 -0.02 0.92 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.16 1.81 5.59 -2.91 -0.02 1.80 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.90 7.00 -2.39 -0.02 1.89 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.04 1.42 7.16 -2.39 -0.02 1.40 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.36 17.95 5.69 -92.71 -0.53 17.42 16 46 H 0.24 14.92 6.77 -92.71 -0.63 14.29 16 47 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.10 1.44 4.96 -2.39 -0.01 1.42 16 Total: -1.00 -76.88 379.89 3.02 -73.86 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.59 Total: 29.56 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 6.80 Total: -4.07 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.99 Total: -124.80 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.44 Total: -26.93 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.37 kcal Total: -76.88 3.02 -73.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690423128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.385 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds