Wall clock time and date at job start Tue Mar 31 2020 20:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.36935 * 119.99826 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00278 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00042 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00004 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00253 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46958 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47017 * 120.00017 * 10 8 6 13 13 H 1.48493 * 109.47385 * 240.00061 * 10 8 6 14 14 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 15 15 C 1.46505 * 120.00341 * 300.00268 * 14 2 1 16 16 C 1.34779 * 119.99848 * 120.00098 * 14 2 1 17 17 O 1.21282 * 120.00232 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00153 * 180.02562 * 16 14 2 19 19 N 1.46498 * 109.47558 * 180.02562 * 18 16 14 20 20 C 1.34768 * 120.00193 * 179.97438 * 19 18 16 21 21 O 1.21277 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.50709 * 119.99968 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.47154 * 179.97438 * 22 20 19 24 24 C 1.38237 * 120.00121 * 269.72686 * 23 22 20 25 25 C 1.38233 * 119.99745 * 179.76771 * 24 23 22 26 26 C 1.38238 * 120.00344 * 0.50433 * 25 24 23 27 27 C 1.38241 * 119.99676 * 359.74663 * 26 25 24 28 28 C 1.38228 * 119.99806 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 0.96999 * 119.99782 * 359.97438 * 5 4 2 35 35 H 0.97009 * 120.00509 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46851 * 89.99998 * 15 14 2 37 37 H 1.08997 * 109.47129 * 209.99273 * 15 14 2 38 38 H 1.08993 * 109.46804 * 329.99912 * 15 14 2 39 39 H 1.09009 * 109.47061 * 300.00107 * 18 16 14 40 40 H 1.08996 * 109.47578 * 59.99511 * 18 16 14 41 41 H 0.97005 * 119.99432 * 359.97438 * 19 18 16 42 42 H 1.09002 * 109.46906 * 299.99524 * 22 20 19 43 43 H 1.08994 * 109.47265 * 59.99922 * 22 20 19 44 44 H 1.08002 * 119.99773 * 359.97438 * 24 23 22 45 45 H 1.08006 * 119.99894 * 180.23244 * 25 24 23 46 46 H 1.08000 * 119.99829 * 179.72464 * 26 25 24 47 47 H 1.08000 * 119.99724 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.99795 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1838 -1.4380 2.2072 7 1 3.6469 -1.8425 3.0525 8 6 5.5672 -1.5380 2.1514 9 7 6.2217 -1.0447 1.1216 10 14 6.5001 -2.3716 3.5386 11 1 5.5398 -2.8373 4.5712 12 1 7.2510 -3.5347 3.0012 13 1 7.4511 -1.4063 4.1458 14 7 2.0183 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4279 16 6 2.7932 -0.0357 -2.0833 17 8 3.0866 1.1253 -1.8912 18 6 3.2951 -0.7460 -3.3140 19 7 4.1096 0.1745 -4.1111 20 6 4.6675 -0.2450 -5.2640 21 8 4.4957 -1.3847 -5.6413 22 6 5.5050 0.7022 -6.0843 23 6 6.0080 -0.0085 -7.3143 24 6 7.2187 -0.6749 -7.2810 25 6 7.6777 -1.3308 -8.4078 26 6 6.9312 -1.3116 -9.5711 27 6 5.7229 -0.6408 -9.6059 28 6 5.2616 0.0111 -8.4777 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2952 34 1 3.9823 -0.4628 0.4316 35 1 7.1885 -1.1149 1.0824 36 1 0.7375 -2.1444 -1.9993 37 1 2.4628 -2.5819 -1.9863 38 1 1.5295 -2.5969 -0.4708 39 1 3.9005 -1.6027 -3.0176 40 1 2.4472 -1.0882 -3.9073 41 1 4.2473 1.0860 -3.8091 42 1 4.8994 1.5585 -6.3811 43 1 6.3526 1.0448 -5.4909 44 1 7.8042 -0.6858 -6.3735 45 1 8.6219 -1.8546 -8.3807 46 1 7.2920 -1.8204 -10.4528 47 1 5.1398 -0.6255 -10.5149 48 1 4.3179 0.5355 -8.5050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698854470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:00 Heat of formation + Delta-G solvation = -55.307076 kcal Electronic energy + Delta-G solvation = -28282.606332 eV Core-core repulsion = 24336.898876 eV Total energy + Delta-G solvation = -3945.707456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 17.50 seconds Orbital eigenvalues (eV) -41.50214 -40.74328 -39.55952 -37.97386 -35.87308 -35.52638 -33.89902 -33.56138 -31.91223 -31.74705 -29.72784 -27.89134 -27.55618 -27.32604 -24.52508 -23.45434 -23.02008 -22.21822 -21.39785 -20.20703 -19.12782 -18.74345 -18.02237 -17.59106 -17.20586 -17.11296 -16.75195 -16.45358 -16.31668 -15.83029 -15.66426 -15.31691 -15.20148 -15.01445 -14.37514 -14.24917 -14.21171 -13.95781 -13.84975 -13.72040 -13.55329 -13.36142 -13.26874 -13.23131 -12.93406 -12.88480 -12.82439 -12.50335 -12.11015 -11.99810 -11.85024 -11.82270 -11.74030 -11.10533 -11.03857 -10.91306 -10.25238 -9.78006 -9.63628 -9.62182 -9.00504 -7.95189 -5.24415 0.42804 0.54222 1.45055 1.45691 1.46902 1.55787 1.59603 1.76434 2.34798 2.54258 2.95191 3.37575 3.38383 3.68425 3.85225 3.95654 3.99675 4.10412 4.18162 4.19501 4.25443 4.30136 4.31275 4.36420 4.40249 4.47382 4.58548 4.67264 4.71705 4.78533 4.79611 4.85675 4.93860 5.00877 5.12827 5.14508 5.18467 5.22051 5.32136 5.47488 5.58121 5.60196 5.64430 5.69117 6.14727 6.24922 6.33271 6.45211 7.03788 7.15441 7.31955 8.08334 8.30964 9.27815 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.002697 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.256458 B =10378.102383 C =12192.941783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.130 3.870 3 H 0.072 0.928 4 C 0.140 3.860 5 N -0.742 5.742 6 C -0.241 4.241 7 H 0.078 0.922 8 C -0.077 4.077 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.264 1.264 12 H -0.294 1.294 13 H -0.297 1.297 14 N -0.592 5.592 15 C 0.073 3.927 16 C 0.508 3.492 17 O -0.575 6.575 18 C 0.111 3.889 19 N -0.715 5.715 20 C 0.517 3.483 21 O -0.573 6.573 22 C -0.097 4.097 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.415 0.585 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.136 0.864 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 1.823 -19.103 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.091 0.909 4 C 0.013 3.987 5 N -0.384 5.384 6 C -0.373 4.373 7 H 0.096 0.904 8 C -0.269 4.269 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.188 1.188 12 H -0.222 1.222 13 H -0.224 1.224 14 N -0.323 5.323 15 C -0.069 4.069 16 C 0.296 3.704 17 O -0.455 6.455 18 C -0.016 4.016 19 N -0.370 5.370 20 C 0.305 3.695 21 O -0.452 6.452 22 C -0.136 4.136 23 C -0.081 4.081 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.253 0.747 42 H 0.150 0.850 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.154 0.846 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.161 1.510 -19.054 20.783 hybrid contribution 1.233 0.017 1.019 1.599 sum -6.929 1.526 -18.035 19.381 Atomic orbital electron populations 1.21960 0.91108 1.03699 1.03221 1.21323 0.96147 0.96485 0.83376 0.90931 1.21237 0.84082 0.97979 0.95440 1.42511 1.02006 1.69828 1.24084 1.19667 0.89885 1.28199 0.99537 0.90377 1.25569 0.97582 1.03194 1.00540 1.69860 1.06811 1.52852 1.32310 0.85084 0.78522 0.77287 0.78921 1.18794 1.22172 1.22402 1.47721 1.49573 1.13428 1.21597 1.21996 1.01874 0.79740 1.03317 1.20709 0.77860 0.86733 0.85082 1.90646 1.58794 1.18633 1.77473 1.21015 0.97169 0.92870 0.90580 1.45779 1.51869 1.16606 1.22719 1.21051 0.79291 0.88642 0.80485 1.90699 1.61979 1.21268 1.71259 1.20719 1.00973 0.97855 0.94084 1.19486 0.95109 0.99024 0.94518 1.21253 0.96474 0.97829 0.98997 1.21403 1.00885 0.99440 0.93235 1.21483 0.95173 0.99391 0.98629 1.21444 0.96713 0.97484 0.98930 1.21260 0.99638 1.00000 0.92780 0.91637 0.90135 0.90504 0.95074 0.94452 0.79691 0.94300 0.89093 0.91185 0.90609 0.89555 0.86602 0.74669 0.84965 0.86339 0.86219 0.84630 0.83939 0.83871 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 2 C 0.13 4.14 2.80 44.99 0.13 4.27 16 3 H 0.07 2.74 6.90 -2.39 -0.02 2.72 16 4 C 0.14 5.34 5.50 86.38 0.48 5.81 16 5 N -0.74 -37.79 5.43 -343.45 -1.87 -39.66 16 6 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 7 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 8 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 9 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 10 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 14 N -0.59 -18.14 2.24 -822.58 -1.85 -19.99 16 15 C 0.07 1.74 9.30 127.77 1.19 2.93 16 16 C 0.51 17.19 7.45 87.66 0.65 17.84 16 17 O -0.58 -23.08 14.99 -3.04 -0.05 -23.12 16 18 C 0.11 3.23 4.71 85.63 0.40 3.64 16 19 N -0.71 -19.88 5.53 -466.79 -2.58 -22.46 16 20 C 0.52 14.27 7.82 87.66 0.69 14.96 16 21 O -0.57 -19.90 16.03 -3.02 -0.05 -19.95 16 22 C -0.10 -1.94 5.83 29.10 0.17 -1.77 16 23 C -0.08 -1.83 4.37 -19.86 -0.09 -1.92 16 24 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 25 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 26 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 27 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 28 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.40 7.67 -2.38 -0.02 1.38 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.34 6.88 -2.39 -0.02 1.32 16 34 H 0.37 20.88 7.06 -92.71 -0.65 20.23 16 35 H 0.25 15.11 8.31 -92.70 -0.77 14.33 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.07 1.71 6.44 -2.39 -0.02 1.69 16 38 H 0.08 1.91 6.53 -2.39 -0.02 1.90 16 39 H 0.09 2.80 7.40 -2.38 -0.02 2.78 16 40 H 0.12 2.81 8.11 -2.39 -0.02 2.79 16 41 H 0.42 11.15 7.44 -92.70 -0.69 10.46 16 42 H 0.13 1.85 8.09 -2.39 -0.02 1.83 16 43 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 44 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 48 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -78.25 399.78 2.24 -76.01 By element: Atomic # 1 Polarization: 45.92 SS G_CDS: -0.37 Total: 45.55 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.69 Total: 15.16 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -6.01 Total: -142.32 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.09 Total: -43.08 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.25 2.24 -76.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698854470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.700 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.50 seconds