Wall clock time and date at job start Tue Mar 31 2020 18:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46873 * 2 1 4 4 C 1.52997 * 109.47125 * 240.00796 * 2 1 3 5 5 N 1.46500 * 109.47064 * 184.99684 * 4 2 1 6 6 C 1.46501 * 119.99971 * 269.72139 * 5 4 2 7 7 C 1.34778 * 119.99930 * 89.99739 * 5 4 2 8 8 O 1.21593 * 120.00120 * 357.26637 * 7 5 4 9 9 C 1.47530 * 119.99894 * 177.26857 * 7 5 4 10 10 C 1.39735 * 120.76809 * 45.49610 * 9 7 5 11 11 C 1.38899 * 118.87396 * 179.81944 * 10 9 7 12 12 C 1.37846 * 119.43072 * 0.28449 * 11 10 9 13 13 N 1.32757 * 120.42803 * 359.97438 * 12 11 10 14 14 C 1.31857 * 122.57985 * 359.90507 * 13 12 11 15 15 O 1.35426 * 119.88828 * 179.88627 * 14 13 12 16 16 C 1.50804 * 122.25344 * 180.24435 * 12 11 10 17 17 C 1.52695 * 110.59525 * 342.03652 * 16 12 11 18 18 C 1.53330 * 108.42248 * 51.39858 * 17 16 12 19 19 C 1.50541 * 117.76480 * 179.86923 * 11 10 9 20 20 N 1.46497 * 109.47599 * 120.00092 * 2 1 3 21 21 C 1.36934 * 120.00204 * 275.00518 * 20 2 1 22 22 H 1.08000 * 119.99765 * 359.97438 * 21 20 2 23 23 C 1.38809 * 120.00190 * 179.97438 * 21 20 2 24 24 N 1.31616 * 120.00284 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00076 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47186 * 89.99833 * 25 23 21 27 27 H 1.48500 * 109.47409 * 210.00182 * 25 23 21 28 28 H 1.48504 * 109.47008 * 330.00160 * 25 23 21 29 29 H 1.08998 * 109.47179 * 59.99712 * 1 2 3 30 30 H 1.09008 * 109.46737 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47464 * 299.99401 * 1 2 3 32 32 H 1.09000 * 109.47901 * 64.99506 * 4 2 1 33 33 H 1.09005 * 109.46759 * 304.99130 * 4 2 1 34 34 H 1.08999 * 109.46955 * 95.30365 * 6 5 4 35 35 H 1.09008 * 109.46866 * 215.30453 * 6 5 4 36 36 H 1.08999 * 109.47262 * 335.30372 * 6 5 4 37 37 H 1.08005 * 120.56604 * 0.04513 * 10 9 7 38 38 H 0.96696 * 113.99976 * 270.02863 * 15 14 13 39 39 H 1.09000 * 109.24931 * 102.33156 * 16 12 11 40 40 H 1.09001 * 109.24763 * 221.78664 * 16 12 11 41 41 H 1.09002 * 109.67204 * 171.12960 * 17 16 12 42 42 H 1.08993 * 109.67754 * 291.66528 * 17 16 12 43 43 H 1.09003 * 109.68711 * 49.75908 * 18 17 16 44 44 H 1.08999 * 109.68861 * 170.33384 * 18 17 16 45 45 H 1.09001 * 109.25637 * 42.57962 * 19 11 10 46 46 H 1.08999 * 109.25550 * 283.15508 * 19 11 10 47 47 H 0.97001 * 119.99861 * 94.99678 * 20 2 1 48 48 H 0.96999 * 120.00396 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8261 -1.1907 6 6 4.3343 0.2315 -1.7667 7 6 4.0758 -1.8984 -0.6118 8 8 3.3844 -2.7544 -0.0942 9 6 5.5449 -2.0337 -0.6060 10 6 6.3613 -0.9493 -0.2741 11 6 7.7395 -1.1215 -0.2776 12 6 8.2677 -2.3500 -0.6123 13 7 7.4687 -3.3618 -0.9287 14 6 6.1547 -3.2526 -0.9386 15 8 5.3912 -4.3202 -1.2723 16 6 9.7532 -2.6091 -0.6315 17 6 10.5273 -1.2938 -0.6821 18 6 10.0109 -0.3843 0.4392 19 6 8.5953 0.0639 0.0809 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0076 2.3757 22 1 1.8926 1.0404 2.4241 23 6 2.6115 -0.6620 3.5091 24 7 2.7367 -0.0057 4.6431 25 14 3.0546 -2.4748 3.4255 26 1 4.4872 -2.6179 3.0617 27 1 2.8146 -3.1047 4.7488 28 1 2.2142 -3.1430 2.3996 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7197 -1.2952 34 1 4.6184 0.9362 -0.9852 35 1 5.2311 -0.2096 -2.2018 36 1 3.7740 0.7547 -2.5416 37 1 5.9278 0.0056 -0.0156 38 1 5.1968 -4.3847 -2.2173 39 1 10.0340 -3.1572 0.2678 40 1 10.0025 -3.2062 -1.5087 41 1 11.5901 -1.4877 -0.5372 42 1 10.3698 -0.8122 -1.6471 43 1 9.9950 -0.9343 1.3801 44 1 10.6592 0.4868 0.5332 45 1 8.1551 0.5803 0.9339 46 1 8.6384 0.7461 -0.7682 47 1 2.2491 -1.6318 1.1525 48 1 3.0601 -0.4629 5.4350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725514708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:49 Heat of formation + Delta-G solvation = -25.943714 kcal Electronic energy + Delta-G solvation = -30382.648092 eV Core-core repulsion = 26438.213927 eV Total energy + Delta-G solvation = -3944.434165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15084 -39.43011 -37.99242 -36.07108 -35.77021 -34.70829 -33.41287 -31.93569 -30.39667 -29.69093 -29.22375 -27.20553 -26.01881 -24.33169 -23.62100 -23.18093 -22.71146 -20.84159 -19.96223 -19.29132 -18.42319 -17.67716 -17.17146 -16.89740 -16.12611 -15.86589 -15.24867 -15.03474 -14.64923 -14.41008 -14.12049 -13.98958 -13.81201 -13.53500 -13.45562 -13.09031 -12.86473 -12.72441 -12.67881 -12.48786 -12.27167 -12.05772 -11.83929 -11.72510 -11.55455 -11.40597 -11.17044 -11.00049 -10.97781 -10.78206 -10.59796 -10.50140 -9.98403 -9.82083 -9.67489 -9.44682 -9.27972 -8.81914 -8.67719 -8.31020 -7.11865 -5.67351 -3.00157 0.67178 1.04841 2.90161 3.14137 3.38397 3.56528 3.60976 3.63961 3.78468 4.28708 4.40075 4.57712 4.63038 4.69135 4.73578 4.76202 4.89857 5.09062 5.19948 5.23180 5.27895 5.33785 5.38953 5.42042 5.48798 5.58605 5.59848 5.62371 5.67444 5.72654 5.76402 5.83554 5.86117 5.89685 5.93119 6.04768 6.11889 6.17276 6.25128 6.38289 6.47247 6.68272 6.80143 7.04924 7.44094 7.56581 7.80481 8.11505 8.44192 8.54134 9.38459 10.11512 10.33190 11.50521 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.004550 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.932283 B = 6152.310133 C = 6723.730411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.108 3.892 5 N -0.601 5.601 6 C 0.078 3.922 7 C 0.570 3.430 8 O -0.506 6.506 9 C -0.189 4.189 10 C -0.028 4.028 11 C -0.143 4.143 12 C 0.171 3.829 13 N -0.511 5.511 14 C 0.358 3.642 15 O -0.463 6.463 16 C -0.070 4.070 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.075 4.075 20 N -0.748 5.748 21 C -0.239 4.239 22 H 0.086 0.914 23 C 0.007 3.993 24 N -0.937 5.937 25 Si 0.876 3.124 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.265 1.265 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.397 0.603 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.377 0.623 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.855 1.270 -19.005 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.015 4.015 5 N -0.334 5.334 6 C -0.066 4.066 7 C 0.356 3.644 8 O -0.381 6.381 9 C -0.195 4.195 10 C -0.053 4.053 11 C -0.145 4.145 12 C 0.035 3.965 13 N -0.230 5.230 14 C 0.176 3.824 15 O -0.269 6.269 16 C -0.108 4.108 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.113 4.113 20 N -0.396 5.396 21 C -0.369 4.369 22 H 0.104 0.896 23 C -0.188 4.188 24 N -0.585 5.585 25 Si 0.707 3.293 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.191 1.191 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.254 0.746 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.215 0.785 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.796 0.007 -18.197 22.835 hybrid contribution -0.289 -0.433 0.011 0.520 sum 13.507 -0.425 -18.186 22.658 Atomic orbital electron populations 1.22386 0.98560 1.01069 1.00493 1.20598 0.92235 0.95796 0.86462 0.92975 1.21984 0.78448 1.02351 0.98737 1.47506 1.07038 1.20661 1.58158 1.21943 0.95342 0.90822 0.98465 1.17718 0.86390 0.81802 0.78472 1.90789 1.63350 1.41305 1.42624 1.21024 0.95354 0.94624 1.08526 1.21963 0.92390 0.98656 0.92339 1.20413 0.94136 0.96851 1.03116 1.20943 0.95616 0.87405 0.92523 1.67016 1.04938 1.33159 1.17933 1.18871 0.85981 0.84236 0.93284 1.84842 1.67817 1.44249 1.29968 1.20441 0.87808 0.98590 1.03937 1.21575 0.99489 0.95048 0.99485 1.21594 0.95577 0.99921 0.98951 1.20419 0.94360 0.94339 1.02181 1.43121 1.79323 1.10673 1.06486 1.19042 1.36533 0.95279 0.86042 0.89595 1.24573 1.01491 0.97242 0.95528 1.69710 1.53095 1.35544 1.00196 0.86644 0.79178 0.87165 0.76335 1.21531 1.22350 1.19056 0.94266 0.93432 0.92124 0.90396 0.90142 0.92113 0.91752 0.90840 0.83159 0.74579 0.89493 0.89527 0.90750 0.91337 0.91259 0.90861 0.89899 0.90161 0.78497 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.55 16 2 C 0.16 3.11 3.19 -67.93 -0.22 2.89 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 C 0.11 1.69 5.18 -4.04 -0.02 1.67 16 5 N -0.60 -9.44 2.77 -182.81 -0.51 -9.95 16 6 C 0.08 0.86 9.07 59.85 0.54 1.41 16 7 C 0.57 10.84 6.42 -12.47 -0.08 10.76 16 8 O -0.51 -11.81 13.24 -5.94 -0.08 -11.88 16 9 C -0.19 -3.22 4.98 -104.78 -0.52 -3.74 16 10 C -0.03 -0.41 7.46 -38.78 -0.29 -0.70 16 11 C -0.14 -1.81 5.74 -104.60 -0.60 -2.41 16 12 C 0.17 2.24 6.63 -82.29 -0.55 1.69 16 13 N -0.51 -7.97 10.18 -9.20 -0.09 -8.06 16 14 C 0.36 5.99 7.75 -16.77 -0.13 5.86 16 15 O -0.46 -7.43 12.56 -29.19 -0.37 -7.79 16 16 C -0.07 -0.66 5.91 -27.99 -0.17 -0.83 16 17 C -0.12 -0.83 5.97 -26.72 -0.16 -0.99 16 18 C -0.12 -0.96 5.98 -26.69 -0.16 -1.12 16 19 C -0.08 -0.70 5.67 -28.09 -0.16 -0.86 16 20 N -0.75 -18.94 4.33 -53.43 -0.23 -19.17 16 21 C -0.24 -7.03 10.41 -15.06 -0.16 -7.19 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 23 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 24 N -0.94 -30.71 13.97 55.49 0.78 -29.94 16 25 Si 0.88 25.49 27.37 -169.99 -4.65 20.84 16 26 H -0.29 -8.58 7.11 56.52 0.40 -8.18 16 27 H -0.30 -8.58 7.11 56.52 0.40 -8.18 16 28 H -0.27 -7.77 6.52 56.52 0.37 -7.40 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 33 H 0.08 1.37 7.46 -51.93 -0.39 0.98 16 34 H 0.06 0.70 6.93 -51.93 -0.36 0.34 16 35 H 0.06 0.63 6.29 -51.92 -0.33 0.30 16 36 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 37 H 0.15 2.08 6.10 -52.48 -0.32 1.76 16 38 H 0.40 4.04 9.06 45.56 0.41 4.46 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.38 10.06 2.77 -40.82 -0.11 9.95 16 48 H 0.26 8.11 8.31 -40.82 -0.34 7.77 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -39.64 378.70 -8.42 -48.06 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.56 Total: 8.17 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.41 Total: 4.01 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.06 Total: -67.11 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.45 Total: -19.68 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.65 Total: 20.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.64 -8.42 -48.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725514708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.115 kcal (2) G-P(sol) polarization free energy of solvation -39.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds