Wall clock time and date at job start Tue Mar 31 2020 18:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46873 * 2 1 4 4 C 1.52997 * 109.47125 * 240.00796 * 2 1 3 5 5 N 1.46500 * 109.47064 * 184.99684 * 4 2 1 6 6 C 1.46501 * 119.99971 * 269.72139 * 5 4 2 7 7 C 1.34778 * 119.99930 * 89.99739 * 5 4 2 8 8 O 1.21593 * 120.00120 * 357.26637 * 7 5 4 9 9 C 1.47530 * 119.99894 * 177.26857 * 7 5 4 10 10 C 1.39735 * 120.76809 * 45.49610 * 9 7 5 11 11 C 1.38899 * 118.87396 * 179.81944 * 10 9 7 12 12 C 1.37846 * 119.43072 * 0.28449 * 11 10 9 13 13 N 1.32757 * 120.42803 * 359.97438 * 12 11 10 14 14 C 1.31857 * 122.57985 * 359.90507 * 13 12 11 15 15 O 1.35426 * 119.88828 * 179.88627 * 14 13 12 16 16 C 1.50804 * 122.25344 * 180.24435 * 12 11 10 17 17 C 1.52695 * 110.59525 * 342.03652 * 16 12 11 18 18 C 1.53330 * 108.42248 * 51.39858 * 17 16 12 19 19 C 1.50541 * 117.76480 * 179.86923 * 11 10 9 20 20 N 1.46497 * 109.47599 * 120.00092 * 2 1 3 21 21 C 1.36934 * 120.00204 * 275.00518 * 20 2 1 22 22 H 1.08000 * 119.99765 * 359.97438 * 21 20 2 23 23 C 1.38809 * 120.00190 * 179.97438 * 21 20 2 24 24 N 1.31616 * 120.00284 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00076 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47186 * 89.99833 * 25 23 21 27 27 H 1.48500 * 109.47409 * 210.00182 * 25 23 21 28 28 H 1.48504 * 109.47008 * 330.00160 * 25 23 21 29 29 H 1.08998 * 109.47179 * 59.99712 * 1 2 3 30 30 H 1.09008 * 109.46737 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47464 * 299.99401 * 1 2 3 32 32 H 1.09000 * 109.47901 * 64.99506 * 4 2 1 33 33 H 1.09005 * 109.46759 * 304.99130 * 4 2 1 34 34 H 1.08999 * 109.46955 * 95.30365 * 6 5 4 35 35 H 1.09008 * 109.46866 * 215.30453 * 6 5 4 36 36 H 1.08999 * 109.47262 * 335.30372 * 6 5 4 37 37 H 1.08005 * 120.56604 * 0.04513 * 10 9 7 38 38 H 0.96696 * 113.99976 * 270.02863 * 15 14 13 39 39 H 1.09000 * 109.24931 * 102.33156 * 16 12 11 40 40 H 1.09001 * 109.24763 * 221.78664 * 16 12 11 41 41 H 1.09002 * 109.67204 * 171.12960 * 17 16 12 42 42 H 1.08993 * 109.67754 * 291.66528 * 17 16 12 43 43 H 1.09003 * 109.68711 * 49.75908 * 18 17 16 44 44 H 1.08999 * 109.68861 * 170.33384 * 18 17 16 45 45 H 1.09001 * 109.25637 * 42.57962 * 19 11 10 46 46 H 1.08999 * 109.25550 * 283.15508 * 19 11 10 47 47 H 0.97001 * 119.99861 * 94.99678 * 20 2 1 48 48 H 0.96999 * 120.00396 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8261 -1.1907 6 6 4.3343 0.2315 -1.7667 7 6 4.0758 -1.8984 -0.6118 8 8 3.3844 -2.7544 -0.0942 9 6 5.5449 -2.0337 -0.6060 10 6 6.3613 -0.9493 -0.2741 11 6 7.7395 -1.1215 -0.2776 12 6 8.2677 -2.3500 -0.6123 13 7 7.4687 -3.3618 -0.9287 14 6 6.1547 -3.2526 -0.9386 15 8 5.3912 -4.3202 -1.2723 16 6 9.7532 -2.6091 -0.6315 17 6 10.5273 -1.2938 -0.6821 18 6 10.0109 -0.3843 0.4392 19 6 8.5953 0.0639 0.0809 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0076 2.3757 22 1 1.8926 1.0404 2.4241 23 6 2.6115 -0.6620 3.5091 24 7 2.7367 -0.0057 4.6431 25 14 3.0546 -2.4748 3.4255 26 1 4.4872 -2.6179 3.0617 27 1 2.8146 -3.1047 4.7488 28 1 2.2142 -3.1430 2.3996 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7197 -1.2952 34 1 4.6184 0.9362 -0.9852 35 1 5.2311 -0.2096 -2.2018 36 1 3.7740 0.7547 -2.5416 37 1 5.9278 0.0056 -0.0156 38 1 5.1968 -4.3847 -2.2173 39 1 10.0340 -3.1572 0.2678 40 1 10.0025 -3.2062 -1.5087 41 1 11.5901 -1.4877 -0.5372 42 1 10.3698 -0.8122 -1.6471 43 1 9.9950 -0.9343 1.3801 44 1 10.6592 0.4868 0.5332 45 1 8.1551 0.5803 0.9339 46 1 8.6384 0.7461 -0.7682 47 1 2.2491 -1.6318 1.1525 48 1 3.0601 -0.4629 5.4350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725514708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:47 Heat of formation + Delta-G solvation = -56.467334 kcal Electronic energy + Delta-G solvation = -30383.971696 eV Core-core repulsion = 26438.213927 eV Total energy + Delta-G solvation = -3945.757768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.27000 -40.69459 -39.05863 -37.67564 -36.72929 -36.17732 -34.64724 -33.89004 -31.58588 -31.00776 -30.55708 -28.31355 -27.22019 -25.51033 -25.25356 -24.45360 -23.70125 -22.02698 -21.25323 -20.58691 -19.80259 -19.46252 -18.32115 -18.12867 -17.36595 -17.00982 -16.79153 -16.48160 -16.07947 -15.58347 -15.31462 -15.09297 -14.81553 -14.79305 -14.54667 -14.49212 -14.42340 -14.01418 -13.91885 -13.68815 -13.54562 -13.34452 -13.16754 -13.07625 -12.92959 -12.80736 -12.54720 -12.38335 -12.21665 -11.87248 -11.85894 -11.80305 -11.70430 -11.65930 -11.18565 -11.07018 -10.77820 -10.47313 -9.78196 -9.59829 -9.26800 -8.10304 -5.34986 -0.46000 -0.05729 1.18977 1.24632 1.41764 1.61316 1.95260 2.31602 2.37631 2.48787 3.23059 3.27420 3.49093 3.53584 3.68981 3.73212 3.88276 4.03818 4.06580 4.10137 4.24893 4.34010 4.39603 4.45283 4.58076 4.59798 4.61132 4.64366 4.65970 4.67647 4.78027 4.84797 4.88834 4.97157 5.01890 5.03902 5.15739 5.22427 5.23473 5.27298 5.42830 5.46674 5.48710 5.63817 5.76674 6.17907 6.28040 6.45867 6.71929 7.05289 7.13605 7.93401 8.08481 9.11770 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.004550 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.932283 B = 6152.310133 C = 6723.730411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.057 0.943 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.071 3.929 7 C 0.562 3.438 8 O -0.562 6.562 9 C -0.214 4.214 10 C -0.033 4.033 11 C -0.138 4.138 12 C 0.166 3.834 13 N -0.527 5.527 14 C 0.343 3.657 15 O -0.482 6.482 16 C -0.071 4.071 17 C -0.110 4.110 18 C -0.123 4.123 19 C -0.076 4.076 20 N -0.758 5.758 21 C -0.204 4.204 22 H 0.071 0.929 23 C -0.047 4.047 24 N -0.976 5.976 25 Si 0.928 3.072 26 H -0.304 1.304 27 H -0.297 1.297 28 H -0.273 1.273 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.134 0.866 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.372 0.628 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.419 2.836 -21.778 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.075 0.925 4 C -0.010 4.010 5 N -0.327 5.327 6 C -0.070 4.070 7 C 0.350 3.650 8 O -0.442 6.442 9 C -0.221 4.221 10 C -0.059 4.059 11 C -0.140 4.140 12 C 0.031 3.969 13 N -0.247 5.247 14 C 0.161 3.839 15 O -0.291 6.291 16 C -0.108 4.108 17 C -0.148 4.148 18 C -0.160 4.160 19 C -0.113 4.113 20 N -0.406 5.406 21 C -0.336 4.336 22 H 0.089 0.911 23 C -0.239 4.239 24 N -0.628 5.628 25 Si 0.760 3.240 26 H -0.232 1.232 27 H -0.224 1.224 28 H -0.199 1.199 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.172 0.828 38 H 0.276 0.724 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.126 0.874 47 H 0.209 0.791 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.344 1.612 -21.063 26.109 hybrid contribution -0.759 -0.826 0.728 1.337 sum 14.585 0.787 -20.335 25.037 Atomic orbital electron populations 1.22240 0.96837 1.00951 1.01581 1.21010 0.93398 0.95903 0.85803 0.92492 1.22007 0.78404 1.01894 0.98725 1.47656 1.07543 1.20634 1.56896 1.22231 0.95970 0.89691 0.99153 1.18134 0.87078 0.81915 0.77866 1.90738 1.64618 1.43451 1.45354 1.21013 0.94636 0.95706 1.10703 1.22111 0.93235 0.98216 0.92340 1.20806 0.93757 0.97910 1.01549 1.21679 0.97171 0.87065 0.91022 1.67106 1.04588 1.34243 1.18761 1.19025 0.86525 0.84280 0.94037 1.84776 1.68056 1.44343 1.31966 1.20610 0.85490 1.00448 1.04280 1.21582 1.00213 0.93271 0.99689 1.21632 0.94913 1.00912 0.98586 1.20553 0.94628 0.93219 1.02930 1.43349 1.79511 1.10613 1.07105 1.19128 1.32739 0.94535 0.87181 0.91143 1.24992 1.03685 0.99324 0.95931 1.69789 1.55849 1.36434 1.00756 0.85830 0.77733 0.84813 0.75582 1.23189 1.22378 1.19858 0.89439 0.94171 0.94734 0.84867 0.91666 0.92435 0.90460 0.87149 0.82762 0.72410 0.89550 0.88589 0.88468 0.90168 0.92664 0.88474 0.90622 0.87430 0.79117 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 9.49 71.98 0.68 -4.50 16 2 C 0.15 5.46 3.19 44.99 0.14 5.60 16 3 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 4 C 0.11 3.24 5.18 86.38 0.45 3.69 16 5 N -0.60 -17.78 2.77 -850.54 -2.36 -20.14 16 6 C 0.07 1.38 9.07 127.77 1.16 2.54 16 7 C 0.56 21.52 6.42 86.69 0.56 22.08 16 8 O -0.56 -26.98 13.24 6.73 0.09 -26.89 16 9 C -0.21 -7.36 4.98 -19.96 -0.10 -7.46 16 10 C -0.03 -0.96 7.46 22.79 0.17 -0.79 16 11 C -0.14 -3.31 5.74 -19.85 -0.11 -3.43 16 12 C 0.17 4.18 6.63 42.36 0.28 4.46 16 13 N -0.53 -16.41 10.18 -296.23 -3.02 -19.42 16 14 C 0.34 11.71 7.75 85.19 0.66 12.37 16 15 O -0.48 -16.07 12.56 -76.48 -0.96 -17.03 16 16 C -0.07 -1.19 5.91 29.78 0.18 -1.01 16 17 C -0.11 -1.16 5.97 30.60 0.18 -0.97 16 18 C -0.12 -1.56 5.98 30.62 0.18 -1.37 16 19 C -0.08 -1.23 5.67 29.71 0.17 -1.06 16 20 N -0.76 -38.37 4.33 -322.96 -1.40 -39.77 16 21 C -0.20 -12.14 10.41 84.03 0.87 -11.27 16 22 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 23 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 24 N -0.98 -65.36 13.97 21.65 0.30 -65.05 16 25 Si 0.93 54.86 27.37 68.60 1.88 56.74 16 26 H -0.30 -18.49 7.11 99.48 0.71 -17.79 16 27 H -0.30 -17.27 7.11 99.48 0.71 -16.56 16 28 H -0.27 -16.27 6.52 99.48 0.65 -15.62 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.13 2.39 7.85 -2.39 -0.02 2.37 16 33 H 0.06 2.13 7.46 -2.38 -0.02 2.11 16 34 H 0.06 1.18 6.93 -2.39 -0.02 1.16 16 35 H 0.08 1.32 6.29 -2.38 -0.01 1.31 16 36 H 0.11 1.33 7.83 -2.39 -0.02 1.31 16 37 H 0.15 4.17 6.10 -2.91 -0.02 4.15 16 38 H 0.42 8.90 9.06 -74.06 -0.67 8.23 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 43 H 0.05 0.86 8.10 -2.39 -0.02 0.85 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 45 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.37 20.06 2.77 -92.71 -0.26 19.81 16 48 H 0.25 16.48 8.31 -92.71 -0.77 15.71 16 Total: -1.00 -90.06 378.70 0.48 -89.59 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.00 Total: 25.68 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.94 Total: 16.30 kcal Atomic # 7 Polarization: -137.91 SS G_CDS: -6.47 Total: -144.38 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.87 Total: -43.92 kcal Atomic # 14 Polarization: 54.86 SS G_CDS: 1.88 Total: 56.74 kcal Total: -90.06 0.48 -89.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725514708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.118 kcal (2) G-P(sol) polarization free energy of solvation -90.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds