Wall clock time and date at job start Tue Mar 31 2020 19:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 5 5 N 1.46898 * 109.46764 * 65.00211 * 4 2 1 6 6 C 1.46906 * 110.99888 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47140 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99980 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99944 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00055 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99682 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00492 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99897 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47616 * 59.99670 * 14 12 10 16 16 H 1.48496 * 109.47325 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47000 * 299.99807 * 14 12 10 18 18 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 19 19 N 1.46497 * 109.46631 * 294.99823 * 18 2 1 20 20 C 1.34781 * 119.99665 * 179.97438 * 19 18 2 21 21 O 1.21277 * 120.00181 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99940 * 180.02562 * 20 19 18 23 23 C 1.50283 * 109.46653 * 300.01172 * 22 20 19 24 24 C 1.32264 * 121.59561 * 303.36596 * 23 22 20 25 25 C 1.45199 * 123.03805 * 0.94294 * 24 23 22 26 26 C 1.32943 * 125.20256 * 319.60598 * 25 24 23 27 27 C 1.45211 * 125.19309 * 359.97438 * 26 25 24 28 28 C 1.32296 * 123.02436 * 40.43201 * 27 26 25 29 29 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 30 30 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 31 31 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47210 * 305.00164 * 4 2 1 33 33 H 1.08997 * 109.46954 * 185.00148 * 4 2 1 34 34 H 1.00902 * 111.00533 * 56.04323 * 5 4 2 35 35 H 1.09000 * 109.47033 * 300.00113 * 6 5 4 36 36 H 1.09001 * 109.46544 * 60.00058 * 6 5 4 37 37 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00294 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.47153 * 54.99452 * 18 2 1 40 40 H 1.08992 * 109.47216 * 174.99961 * 18 2 1 41 41 H 0.96998 * 120.00260 * 0.02562 * 19 18 2 42 42 H 1.09001 * 109.46367 * 59.99782 * 22 20 19 43 43 H 1.07998 * 119.20669 * 123.31937 * 23 22 20 44 44 H 1.07995 * 118.47169 * 180.93945 * 24 23 22 45 45 H 1.08000 * 117.40369 * 139.58369 * 25 24 23 46 46 H 1.07997 * 117.40359 * 179.97438 * 26 25 24 47 47 H 1.07998 * 118.48691 * 220.41356 * 27 26 25 48 48 H 1.07996 * 119.20196 * 179.04553 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6514 0.0374 -2.4456 6 6 2.1258 -0.6266 -3.6672 7 6 1.7099 0.1792 -4.8708 8 8 1.0798 1.2054 -4.7254 9 7 2.0371 -0.2409 -6.1089 10 6 1.6592 0.4925 -7.2038 11 1 1.0988 1.4067 -7.0743 12 6 1.9970 0.0596 -8.4802 13 7 2.6793 -1.0524 -8.6379 14 14 1.4827 1.0592 -9.9721 15 1 2.0750 2.4182 -9.8857 16 1 1.9615 0.3876 -11.2070 17 1 0.0020 1.1661 -10.0098 18 6 2.0400 -0.7213 1.2492 19 7 1.6524 0.0354 2.4423 20 6 1.9956 -0.4136 3.6659 21 8 2.6247 -1.4442 3.7793 22 6 1.5964 0.3644 4.8933 23 6 2.1954 1.7412 4.8303 24 6 3.4992 1.9246 4.7044 25 6 4.4460 0.8289 4.5977 26 6 4.3927 -0.3009 5.2964 27 6 3.3788 -0.6275 6.2832 28 6 2.0967 -0.3446 6.1206 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 3.1263 -0.7995 -1.2056 34 1 1.9882 0.9873 -2.3967 35 1 3.2128 -0.7038 -3.6400 36 1 1.6921 -1.6246 -3.7300 37 1 2.5407 -1.0617 -6.2252 38 1 2.9148 -1.3548 -9.5289 39 1 1.6053 -1.7198 1.2952 40 1 3.1262 -0.7995 1.2056 41 1 1.1483 0.8590 2.3517 42 1 0.5100 0.4425 4.9364 43 1 1.5456 2.6018 4.8885 44 1 3.8769 2.9360 4.6797 45 1 5.2582 0.9405 3.8946 46 1 5.1648 -1.0340 5.1156 47 1 3.6854 -1.1245 7.1917 48 1 1.3926 -0.6297 6.8883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753616484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:56 Heat of formation + Delta-G solvation = -26.325795 kcal Electronic energy + Delta-G solvation = -27455.113355 eV Core-core repulsion = 23510.662622 eV Total energy + Delta-G solvation = -3944.450733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71424 -38.45483 -37.88888 -36.85103 -34.88401 -33.87682 -33.01484 -32.61339 -31.88244 -31.18227 -27.55088 -27.32819 -26.08682 -24.72214 -23.89498 -23.09936 -21.24682 -20.66126 -19.29920 -18.86310 -17.88285 -17.86698 -17.53611 -16.79756 -16.29891 -15.85562 -15.70974 -15.30558 -14.78115 -14.63640 -14.52269 -14.41101 -14.16861 -13.74539 -13.61162 -13.39046 -13.14802 -12.84154 -12.60904 -12.47032 -12.39383 -12.26917 -11.91039 -11.67072 -11.51532 -11.27180 -11.13071 -11.01892 -10.96980 -10.86169 -10.55242 -10.44321 -10.21498 -10.13660 -9.58553 -9.49915 -9.23361 -8.51773 -8.45959 -8.05174 -7.95661 -6.41415 -3.82394 0.93199 1.67173 2.44441 2.87681 3.07125 3.20147 3.25867 3.30226 3.91250 4.09742 4.31631 4.36416 4.43440 4.58002 4.71314 4.73365 4.76556 4.81708 4.90822 4.97388 5.11102 5.18028 5.26286 5.30021 5.36300 5.49658 5.58581 5.62380 5.63870 5.68924 5.77230 5.88323 5.90845 5.99142 6.11357 6.12731 6.19320 6.27298 6.28890 6.40809 6.42035 6.45858 6.54320 7.20446 7.31182 7.55041 7.65452 8.06212 8.06514 8.61508 9.17874 9.54584 10.06027 10.76215 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.001631 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.470491 B =17159.665556 C =17217.365319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.127 3.873 19 N -0.724 5.724 20 C 0.522 3.478 21 O -0.530 6.530 22 C -0.048 4.048 23 C -0.151 4.151 24 C -0.104 4.104 25 C -0.149 4.149 26 C -0.073 4.073 27 C -0.103 4.103 28 C -0.129 4.129 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 1.471 29.375 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.003 3.997 19 N -0.375 5.375 20 C 0.308 3.692 21 O -0.406 6.406 22 C -0.069 4.069 23 C -0.169 4.169 24 C -0.122 4.122 25 C -0.168 4.168 26 C -0.091 4.091 27 C -0.121 4.121 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.235 0.765 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.135 0.865 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.493 1.020 29.303 29.325 hybrid contribution 0.884 0.464 -0.928 1.363 sum 1.378 1.484 28.375 28.448 Atomic orbital electron populations 1.21752 0.93760 1.02129 1.02046 1.21335 0.97587 0.99921 0.92977 0.90589 1.21896 0.97297 0.97965 0.89255 1.60049 1.64130 1.05825 0.99790 1.21668 0.97739 0.98665 0.90132 1.19812 0.85553 0.87927 0.84087 1.90517 1.44101 1.26465 1.85749 1.41861 1.49490 1.24230 1.04444 1.19655 1.32976 1.06717 0.83639 0.87974 1.25264 0.96907 0.96657 0.99117 1.69603 1.38802 1.21741 1.24165 0.85911 0.79054 0.79369 0.79836 1.19935 1.20983 1.19887 1.21351 0.99848 0.95352 0.83193 1.45933 1.58104 1.27861 1.05642 1.20391 0.79175 0.85381 0.84285 1.90698 1.39111 1.24437 1.86375 1.19224 1.01950 0.93307 0.92432 1.22908 0.95824 0.95702 1.02494 1.21146 0.93534 0.98618 0.98885 1.21029 1.00681 0.94422 1.00619 1.21061 0.97942 0.95601 0.94500 1.21033 0.93503 0.99327 0.98231 1.22697 0.96222 0.98133 0.97647 0.93711 0.90463 0.92825 0.90773 0.95348 0.83269 0.93904 0.89590 0.77449 0.91817 0.91374 0.91722 0.76536 0.87528 0.85887 0.86326 0.87056 0.86947 0.86499 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.95 37.16 0.33 -1.07 16 2 C -0.10 -0.96 2.57 -90.62 -0.23 -1.20 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.07 0.78 5.08 -3.82 -0.02 0.76 16 5 N -0.67 -10.34 5.58 -115.05 -0.64 -10.98 16 6 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 7 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 8 O -0.58 -15.76 15.78 5.54 0.09 -15.68 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 18 C 0.13 1.22 5.06 -4.04 -0.02 1.20 16 19 N -0.72 -6.20 5.18 -60.30 -0.31 -6.51 16 20 C 0.52 5.25 5.48 -10.98 -0.06 5.19 16 21 O -0.53 -7.17 13.67 5.56 0.08 -7.09 16 22 C -0.05 -0.35 2.89 -94.47 -0.27 -0.63 16 23 C -0.15 -0.98 8.89 -36.44 -0.32 -1.30 16 24 C -0.10 -0.77 9.58 -38.75 -0.37 -1.14 16 25 C -0.15 -1.33 8.53 -38.65 -0.33 -1.66 16 26 C -0.07 -0.69 7.35 -38.65 -0.28 -0.97 16 27 C -0.10 -0.89 9.09 -38.74 -0.35 -1.24 16 28 C -0.13 -1.02 8.78 -36.43 -0.32 -1.34 16 29 H 0.04 0.37 7.18 -51.93 -0.37 -0.01 16 30 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.35 5.58 8.43 -39.29 -0.33 5.24 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 2.65 7.54 -40.82 -0.31 2.34 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -33.26 396.73 -9.37 -42.63 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -7.59 Total: 14.13 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.61 Total: -0.29 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.29 Total: -55.72 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.16 Total: -22.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.26 -9.37 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753616484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.306 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds