Wall clock time and date at job start Tue Mar 31 2020 19:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47204 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00140 * 14 12 10 17 17 H 1.48498 * 109.47371 * 240.00040 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 20 18 24 24 C 1.38231 * 119.99536 * 269.72751 * 23 22 20 25 25 C 1.38237 * 119.99860 * 179.76691 * 24 23 22 26 26 C 1.38244 * 119.99491 * 0.50006 * 25 24 23 27 27 C 1.38236 * 120.00090 * 359.75263 * 26 25 24 28 28 C 1.38226 * 119.99863 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 30 30 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 40 40 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 41 41 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 42 42 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 43 43 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 44 44 H 1.07996 * 120.00534 * 359.97438 * 24 23 22 45 45 H 1.07998 * 120.00483 * 180.23291 * 25 24 23 46 46 H 1.08001 * 119.99377 * 179.72510 * 26 25 24 47 47 H 1.07994 * 119.99725 * 179.97438 * 27 26 25 48 48 H 1.08007 * 120.00176 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.6422 -2.3666 -2.8098 16 1 10.6015 -4.4310 -4.0812 17 1 10.7998 -2.3042 -5.2292 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1328 0.2011 4.1341 24 6 5.4952 0.2850 3.9156 25 6 6.2629 1.1571 4.6644 26 6 5.6698 1.9379 5.6390 27 6 4.3082 1.8502 5.8610 28 6 3.5397 0.9822 5.1083 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 8.2105 -3.8280 -5.9387 39 1 2.4159 -2.7376 0.9716 40 1 1.6238 -2.2853 2.5001 41 1 0.6905 -2.3002 0.9846 42 1 2.4470 -1.0881 3.9073 43 1 3.9004 -1.6025 3.0177 44 1 5.9593 -0.3284 3.1575 45 1 7.3267 1.2254 4.4912 46 1 6.2704 2.6161 6.2270 47 1 3.8450 2.4599 6.6226 48 1 2.4759 0.9133 5.2821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:18 Heat of formation + Delta-G solvation = -43.846007 kcal Electronic energy + Delta-G solvation = -28481.476847 eV Core-core repulsion = 24536.266380 eV Total energy + Delta-G solvation = -3945.210467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 29.44 seconds Orbital eigenvalues (eV) -40.20726 -38.90418 -38.21618 -36.70025 -34.64063 -33.78298 -32.99027 -31.51270 -31.15294 -30.83056 -27.58731 -27.55595 -26.84813 -24.96620 -23.25416 -22.53391 -22.26408 -20.80820 -19.32217 -18.88518 -17.85662 -17.27958 -16.78708 -16.38476 -15.83054 -15.69381 -15.26339 -14.94928 -14.88578 -14.52633 -14.28969 -13.94099 -13.68123 -13.54291 -13.38917 -13.26679 -13.10545 -12.90131 -12.64123 -12.51538 -12.33623 -12.20467 -12.01149 -11.87857 -11.66428 -11.48209 -11.40800 -11.08932 -11.04331 -10.95001 -10.86051 -10.33443 -10.21278 -9.68952 -9.50438 -8.84566 -8.66787 -8.58557 -8.38164 -8.01624 -7.93717 -6.40644 -3.81172 1.37100 1.47876 2.80799 3.06531 3.17093 3.27506 3.35114 3.85326 3.93204 4.10109 4.32145 4.63618 4.72732 4.82629 4.92275 5.00808 5.04078 5.09277 5.12889 5.13411 5.21617 5.23887 5.27931 5.43711 5.47114 5.47745 5.53885 5.56877 5.58628 5.69471 5.80176 5.80776 5.90134 5.98840 6.00313 6.06282 6.10072 6.28152 6.47884 6.56883 6.59933 6.65504 7.05054 7.25083 7.48138 7.56635 7.69075 8.08282 8.35165 8.63175 9.19697 9.56158 10.08029 10.77334 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.003009 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.209431 B = 9302.939996 C =11659.999811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.048 3.952 5 N -0.662 5.662 6 C 0.051 3.949 7 C 0.442 3.558 8 O -0.580 6.580 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.928 3.072 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.525 3.475 21 O -0.535 6.535 22 C -0.100 4.100 23 C -0.063 4.063 24 C -0.099 4.099 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.109 4.109 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.351 0.649 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.270 0.730 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 3.614 15.609 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.117 0.883 4 C -0.082 4.082 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.464 6.464 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.328 5.328 19 C -0.065 4.065 20 C 0.313 3.687 21 O -0.411 6.411 22 C -0.140 4.140 23 C -0.064 4.064 24 C -0.117 4.117 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.170 0.830 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.185 3.879 16.372 22.665 hybrid contribution 0.509 0.133 -1.432 1.526 sum -14.676 4.013 14.940 21.323 Atomic orbital electron populations 1.22089 0.94803 1.02310 1.02482 1.21055 0.93352 0.98047 0.84159 0.88303 1.22349 0.89702 1.00395 0.95773 1.60011 1.03041 1.26916 1.39535 1.21666 0.95272 0.99727 0.91466 1.19823 0.88036 0.84448 0.84994 1.90538 1.71101 1.51594 1.33145 1.41874 1.07396 1.51129 1.19861 1.19749 0.81526 1.34906 1.06481 0.87918 1.25254 1.00652 0.96843 0.95252 1.69620 1.36565 1.38819 1.09463 0.85814 0.82306 0.77893 0.78424 1.19205 1.20753 1.20776 1.47527 1.51001 1.12168 1.22151 1.21752 1.01161 0.82167 1.01396 1.20333 0.77503 0.86827 0.84003 1.90696 1.56716 1.17140 1.76576 1.20699 1.00267 0.98645 0.94404 1.19307 0.93762 0.97401 0.95906 1.21133 0.93378 0.98579 0.98593 1.21148 1.00024 0.96367 0.96083 1.21116 0.95043 0.99540 0.98519 1.21029 0.94153 0.99046 1.00011 1.20909 0.99262 0.96403 0.96109 0.91419 0.92138 0.92138 0.94618 0.90929 0.82958 0.89818 0.94088 0.77529 0.91969 0.91688 0.91499 0.91372 0.88491 0.87644 0.85669 0.86043 0.86404 0.86409 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.17 37.16 0.34 -0.97 16 2 C 0.14 1.58 2.88 -67.93 -0.20 1.39 16 3 H 0.10 1.37 6.90 -51.93 -0.36 1.01 16 4 C 0.05 0.59 4.98 -3.82 -0.02 0.57 16 5 N -0.66 -10.95 5.85 -115.06 -0.67 -11.62 16 6 C 0.05 0.92 6.17 -4.97 -0.03 0.88 16 7 C 0.44 10.58 7.82 -10.98 -0.09 10.49 16 8 O -0.58 -16.07 15.78 5.54 0.09 -15.99 16 9 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 14 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 N -0.60 -6.99 2.49 -173.93 -0.43 -7.42 16 19 C 0.08 0.68 9.40 59.85 0.56 1.24 16 20 C 0.53 7.42 7.67 -10.98 -0.08 7.33 16 21 O -0.53 -9.71 15.36 5.56 0.09 -9.62 16 22 C -0.10 -1.14 4.38 -29.03 -0.13 -1.27 16 23 C -0.06 -0.83 4.37 -104.62 -0.46 -1.28 16 24 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 27 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 28 C -0.11 -1.28 9.70 -39.59 -0.38 -1.67 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 34 H 0.35 6.57 8.43 -39.29 -0.33 6.24 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 41 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 42 H 0.10 0.79 7.35 -51.93 -0.38 0.41 16 43 H 0.11 1.15 8.05 -51.93 -0.42 0.73 16 44 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -34.71 400.86 -8.94 -43.65 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -7.39 Total: 15.91 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.30 Total: 1.40 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.44 Total: -57.64 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.17 Total: -25.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.71 -8.94 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.191 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.45 seconds