Wall clock time and date at job start Tue Mar 31 2020 19:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47328 * 2 1 4 4 C 1.52996 * 109.47130 * 119.99825 * 2 1 3 5 5 N 1.46901 * 109.47248 * 174.99896 * 4 2 1 6 6 C 1.46903 * 111.00021 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47023 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99878 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99843 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99973 * 0.02562 * 10 9 7 12 12 C 1.38943 * 119.99703 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99683 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00464 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47016 * 89.99583 * 14 12 10 16 16 H 1.48490 * 109.47417 * 209.99676 * 14 12 10 17 17 H 1.48504 * 109.46975 * 330.00182 * 14 12 10 18 18 N 1.46498 * 109.46733 * 239.99919 * 2 1 3 19 19 C 1.46495 * 120.00356 * 299.99587 * 18 2 1 20 20 C 1.34785 * 119.99813 * 120.00396 * 18 2 1 21 21 O 1.21284 * 119.99776 * 359.97438 * 20 18 2 22 22 C 1.50690 * 119.99981 * 179.97438 * 20 18 2 23 23 C 1.50702 * 109.47286 * 179.97438 * 22 20 18 24 24 C 1.38234 * 119.99895 * 269.72882 * 23 22 20 25 25 C 1.38240 * 120.00062 * 180.32314 * 24 23 22 26 26 C 1.38234 * 119.99686 * 359.92348 * 25 24 23 27 27 C 1.38234 * 120.00244 * 0.07174 * 26 25 24 28 28 C 1.38230 * 119.99864 * 359.95693 * 27 26 25 29 29 H 1.09000 * 109.47144 * 300.00055 * 1 2 3 30 30 H 1.09007 * 109.47397 * 59.99806 * 1 2 3 31 31 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47509 * 295.00214 * 4 2 1 33 33 H 1.09011 * 109.46983 * 54.99916 * 4 2 1 34 34 H 1.00898 * 110.99561 * 56.04603 * 5 4 2 35 35 H 1.08995 * 109.46513 * 299.99659 * 6 5 4 36 36 H 1.09001 * 109.47009 * 59.99822 * 6 5 4 37 37 H 0.96997 * 120.00002 * 359.97438 * 9 7 6 38 38 H 0.97010 * 119.99837 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47521 * 270.00066 * 19 18 2 40 40 H 1.09000 * 109.46882 * 30.00709 * 19 18 2 41 41 H 1.09000 * 109.47145 * 149.99835 * 19 18 2 42 42 H 1.09003 * 109.47121 * 60.00095 * 22 20 18 43 43 H 1.09001 * 109.47678 * 300.00200 * 22 20 18 44 44 H 1.08001 * 120.00279 * 0.27436 * 24 23 22 45 45 H 1.07997 * 119.99831 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.99747 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.00356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0303 -1.5159 2.3762 7 6 5.5317 -1.6043 2.2808 8 8 6.1067 -1.1394 1.3193 9 7 6.2354 -2.2000 3.2638 10 6 7.6013 -2.2810 3.1767 11 1 8.1132 -1.8670 2.3206 12 6 8.3268 -2.8946 4.1904 13 7 9.6360 -2.9718 4.1071 14 14 7.4414 -3.6100 5.6715 15 1 7.0922 -5.0281 5.4021 16 1 8.3269 -3.5357 6.8611 17 1 6.2009 -2.8351 5.9284 18 7 2.0182 -0.6906 -1.1962 19 6 1.6644 -2.0932 -1.4280 20 6 2.7932 -0.0356 -2.0834 21 8 3.0859 1.1256 -1.8916 22 6 3.2959 -0.7461 -3.3135 23 6 4.1326 0.2012 -4.1342 24 6 3.5395 0.9764 -5.1131 25 6 4.3080 1.8406 -5.8705 26 6 5.6693 1.9306 -5.6478 27 6 6.2624 1.1555 -4.6689 28 6 5.4940 0.2910 -3.9120 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.9279 0.0826 1.0824 35 1 3.7557 -0.9587 3.2718 36 1 3.6094 -2.5199 2.4295 37 1 5.7756 -2.5715 4.0328 38 1 10.1426 -3.4005 4.8147 39 1 2.4157 -2.7377 -0.9717 40 1 0.6904 -2.3002 -0.9847 41 1 1.6237 -2.2852 -2.5002 42 1 2.4483 -1.0890 -3.9069 43 1 3.9015 -1.6024 -3.0166 44 1 2.4758 0.9064 -5.2868 45 1 3.8447 2.4458 -6.6355 46 1 6.2697 2.6060 -6.2393 47 1 7.3260 1.2256 -4.4952 48 1 5.9573 -0.3149 -3.1474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:41 Heat of formation + Delta-G solvation = -36.528980 kcal Electronic energy + Delta-G solvation = -28519.043879 eV Core-core repulsion = 24574.150703 eV Total energy + Delta-G solvation = -3944.893176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 19.12 seconds Orbital eigenvalues (eV) -40.23078 -38.92156 -38.39806 -36.76078 -34.71677 -33.84279 -33.01150 -31.68944 -31.47290 -30.82078 -27.75604 -27.56810 -26.88821 -24.97541 -23.15198 -22.52583 -22.28370 -20.83298 -19.41221 -19.01981 -18.27399 -17.30954 -16.78488 -16.39459 -15.84913 -15.73583 -15.33669 -15.03890 -14.93349 -14.75083 -14.22497 -14.06118 -13.73548 -13.43849 -13.31047 -13.23628 -13.12337 -12.94075 -12.71855 -12.53214 -12.43319 -12.26445 -12.15759 -12.06484 -11.93143 -11.67085 -11.53484 -11.15679 -11.08343 -10.94163 -10.91112 -10.59594 -9.96958 -9.71294 -9.56205 -8.83665 -8.67237 -8.64748 -8.48559 -8.17869 -8.10208 -6.30166 -3.81477 1.37716 1.48757 2.78311 3.02267 3.03317 3.06440 3.14715 3.75929 3.85642 4.07783 4.11573 4.61092 4.68300 4.82200 4.85118 4.89498 4.97715 5.04238 5.06424 5.13742 5.16632 5.22611 5.23764 5.39338 5.41816 5.46211 5.48599 5.51234 5.57535 5.63738 5.70216 5.76165 5.81489 5.85699 5.93521 5.97792 6.05136 6.10958 6.48479 6.55911 6.58434 6.66116 7.05853 7.11997 7.44830 7.58630 7.60417 8.15841 8.32559 8.61192 8.96334 9.43616 9.84622 10.83091 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.002954 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.142225 B = 9476.745636 C =11539.107358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.048 3.952 5 N -0.662 5.662 6 C 0.049 3.951 7 C 0.450 3.550 8 O -0.561 6.561 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.596 5.596 19 C 0.079 3.921 20 C 0.525 3.475 21 O -0.534 6.534 22 C -0.100 4.100 23 C -0.064 4.064 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.352 0.648 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.500 2.747 -13.217 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.117 0.883 4 C -0.082 4.082 5 N -0.295 5.295 6 C -0.084 4.084 7 C 0.236 3.764 8 O -0.443 6.443 9 N -0.232 5.232 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.329 5.329 19 C -0.065 4.065 20 C 0.313 3.687 21 O -0.410 6.410 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.172 0.828 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.202 0.798 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.737 3.045 -14.059 24.423 hybrid contribution -0.632 -0.146 2.179 2.274 sum -20.369 2.898 -11.880 23.758 Atomic orbital electron populations 1.22091 0.94778 1.02306 1.02516 1.21045 0.93374 0.98069 0.84122 0.88257 1.22356 0.89519 1.00440 0.95899 1.60001 1.03195 1.27069 1.39248 1.21699 0.95019 0.99909 0.91772 1.19721 0.87969 0.83995 0.84731 1.90581 1.70984 1.50192 1.32523 1.42210 1.07854 1.53259 1.19862 1.19428 0.79584 1.35891 1.08349 0.86325 1.25035 0.95434 0.97717 0.98016 1.69627 1.05057 1.43417 1.34128 0.86667 0.79610 0.79971 0.83089 1.19635 1.20213 1.19577 1.47529 1.51063 1.12179 1.22162 1.21749 1.01105 0.82154 1.01461 1.20354 0.77472 0.86836 0.84000 1.90701 1.56693 1.17109 1.76539 1.20698 1.00275 0.98649 0.94371 1.19302 0.93783 0.97444 0.95926 1.20907 0.99235 0.96492 0.96082 1.21032 0.94163 0.99075 0.99995 1.21118 0.95037 0.99516 0.98505 1.21157 1.00069 0.96394 0.95978 1.21138 0.93359 0.98569 0.98568 0.91431 0.92094 0.92144 0.94579 0.90899 0.82773 0.93973 0.89683 0.79761 0.91644 0.91714 0.91399 0.91459 0.88496 0.87617 0.86637 0.86416 0.86388 0.85982 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.17 37.16 0.34 -0.90 16 2 C 0.14 1.51 2.88 -67.93 -0.20 1.31 16 3 H 0.10 1.33 6.90 -51.93 -0.36 0.97 16 4 C 0.05 0.55 4.98 -3.83 -0.02 0.53 16 5 N -0.66 -10.39 5.85 -115.06 -0.67 -11.07 16 6 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 7 C 0.45 10.32 7.82 -10.99 -0.09 10.24 16 8 O -0.56 -15.33 15.78 5.54 0.09 -15.24 16 9 N -0.59 -14.22 5.09 -10.96 -0.06 -14.27 16 10 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 11 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 14 Si 0.88 19.45 27.74 -169.99 -4.71 14.74 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 18 N -0.60 -6.75 2.49 -173.94 -0.43 -7.18 16 19 C 0.08 0.65 9.40 59.84 0.56 1.21 16 20 C 0.53 7.27 7.67 -10.99 -0.08 7.18 16 21 O -0.53 -9.56 15.36 5.55 0.09 -9.47 16 22 C -0.10 -1.12 4.38 -29.04 -0.13 -1.25 16 23 C -0.06 -0.83 4.37 -104.62 -0.46 -1.29 16 24 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 25 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 28 C -0.10 -1.39 9.70 -39.59 -0.38 -1.77 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.40 6.66 -51.93 -0.35 0.05 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.74 7.84 -51.92 -0.41 0.33 16 34 H 0.35 6.33 8.43 -39.29 -0.33 6.00 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 41 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 42 H 0.10 0.78 7.34 -51.93 -0.38 0.40 16 43 H 0.11 1.14 8.05 -51.93 -0.42 0.72 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 48 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -35.95 397.73 -8.59 -44.54 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.35 Total: 16.10 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.31 Total: 1.06 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.39 Total: -57.72 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.17 Total: -24.72 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.95 -8.59 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.011 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.12 seconds