Wall clock time and date at job start Tue Mar 31 2020 18:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47395 * 2 1 4 4 C 1.53007 * 109.47029 * 240.00056 * 2 1 3 5 5 N 1.46505 * 109.46876 * 185.00002 * 4 2 1 6 6 C 1.46500 * 119.99999 * 269.99868 * 5 4 2 7 7 C 1.36938 * 119.99938 * 89.99997 * 5 4 2 8 8 H 1.08001 * 119.99656 * 22.33467 * 7 5 4 9 9 C 1.38806 * 119.99898 * 202.33424 * 7 5 4 10 10 N 1.31618 * 120.00462 * 11.36038 * 9 7 5 11 11 Si 1.86805 * 119.99796 * 191.36248 * 9 7 5 12 12 H 1.48502 * 109.47129 * 89.99714 * 11 9 7 13 13 H 1.48499 * 109.47139 * 209.99786 * 11 9 7 14 14 H 1.48502 * 109.47088 * 329.99594 * 11 9 7 15 15 N 1.46498 * 109.46963 * 120.00095 * 2 1 3 16 16 C 1.34778 * 119.99953 * 274.99928 * 15 2 1 17 17 O 1.21580 * 119.99769 * 359.97438 * 16 15 2 18 18 C 1.47613 * 119.99849 * 180.02562 * 16 15 2 19 19 C 1.39696 * 120.09738 * 0.02562 * 18 16 15 20 20 C 1.37698 * 119.88219 * 180.02562 * 19 18 16 21 21 C 1.39090 * 120.41285 * 359.97438 * 20 19 18 22 22 C 1.39250 * 120.09638 * 359.87383 * 21 20 19 23 23 C 1.38731 * 119.67183 * 0.19991 * 22 21 20 24 24 N 1.39914 * 121.83866 * 180.27470 * 22 21 20 25 25 C 1.46898 * 110.99526 * 215.16573 * 24 22 21 26 26 C 1.46755 * 112.11923 * 339.93991 * 24 22 21 27 27 C 1.53415 * 108.58193 * 50.24201 * 26 24 22 28 28 O 1.35998 * 118.58996 * 179.55546 * 21 20 19 29 29 H 1.09000 * 109.46972 * 300.00209 * 1 2 3 30 30 H 1.09007 * 109.46712 * 59.99923 * 1 2 3 31 31 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46792 * 304.99909 * 4 2 1 33 33 H 1.09000 * 109.47304 * 65.00167 * 4 2 1 34 34 H 1.09001 * 109.46987 * 94.23085 * 6 5 4 35 35 H 1.08999 * 109.47067 * 214.22948 * 6 5 4 36 36 H 1.08999 * 109.46904 * 334.22672 * 6 5 4 37 37 H 0.96992 * 119.99947 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00074 * 95.00074 * 15 2 1 39 39 H 1.07993 * 120.06043 * 0.03479 * 19 18 16 40 40 H 1.08000 * 119.79798 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.93198 * 179.88191 * 23 22 21 42 42 H 1.09002 * 109.47393 * 181.45038 * 25 24 22 43 43 H 1.08998 * 109.47336 * 301.45172 * 25 24 22 44 44 H 1.09000 * 109.47489 * 61.45162 * 25 24 22 45 45 H 1.08992 * 109.61519 * 169.97545 * 26 24 22 46 46 H 1.09003 * 109.61574 * 290.51899 * 26 24 22 47 47 H 1.09008 * 109.77341 * 56.28690 * 27 26 24 48 48 H 1.08995 * 109.77505 * 177.07434 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0850 -1.9159 -0.6023 8 1 3.5338 -2.8399 -0.5086 9 6 5.3862 -1.8326 -0.1264 10 7 5.9795 -0.6614 -0.0339 11 14 6.2955 -3.3830 0.3827 12 1 7.0229 -3.9371 -0.7874 13 1 7.2651 -3.0572 1.4593 14 1 5.3215 -4.3870 0.8810 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8583 1.1615 2.4116 18 6 2.6395 -0.7140 3.5622 19 6 2.9733 -2.0692 3.5015 20 6 3.4318 -2.7139 4.6285 21 6 3.5658 -2.0242 5.8289 22 6 3.2384 -0.6725 5.8979 23 6 2.7746 -0.0196 4.7651 24 7 3.3644 0.0578 7.0846 25 6 2.2974 1.0606 7.2013 26 6 3.4014 -0.8109 8.2668 27 6 4.4460 -1.9100 8.0335 28 8 4.0133 -2.6997 6.9211 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.6023 0.9455 -0.9802 35 1 5.2404 -0.2028 -2.1812 36 1 3.7811 0.7483 -2.5471 37 1 6.8887 -0.6032 0.2990 38 1 2.2490 -1.6318 1.1526 39 1 2.8721 -2.6101 2.5723 40 1 3.6899 -3.7615 4.5799 41 1 2.5176 1.0283 4.8143 42 1 2.4339 1.6313 8.1199 43 1 2.3370 1.7346 6.3456 44 1 1.3294 0.5602 7.2251 45 1 3.6765 -0.2245 9.1433 46 1 2.4216 -1.2637 8.4189 47 1 5.4129 -1.4584 7.8110 48 1 4.5266 -2.5367 8.9216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754316476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:57 Heat of formation + Delta-G solvation = -5.385689 kcal Electronic energy + Delta-G solvation = -30013.877853 eV Core-core repulsion = 26070.335151 eV Total energy + Delta-G solvation = -3943.542702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 13.29 seconds Orbital eigenvalues (eV) -41.09235 -39.24368 -37.23006 -36.65272 -36.08923 -33.93960 -31.70589 -30.85242 -30.39830 -29.84353 -28.82562 -26.15161 -25.59787 -25.45888 -24.51508 -22.67533 -21.65341 -21.17988 -20.04115 -19.36563 -18.26759 -17.43442 -16.82785 -16.61890 -15.88749 -15.44779 -15.09368 -14.87517 -14.72665 -14.47149 -14.29300 -13.98692 -13.71395 -13.64824 -13.57221 -13.13137 -12.92659 -12.80689 -12.48185 -12.25298 -12.14036 -11.93915 -11.75659 -11.57841 -11.37465 -11.25999 -10.95838 -10.84444 -10.69915 -10.67533 -10.36526 -10.21713 -10.02591 -9.94669 -9.81297 -9.25107 -8.55395 -8.42751 -8.19373 -7.60505 -6.75972 -5.72143 -3.18593 1.15971 1.47279 3.04568 3.34186 3.35640 3.41457 3.45832 3.56162 3.90630 4.27754 4.34095 4.47673 4.61656 4.77847 4.82360 5.15792 5.16779 5.22262 5.28775 5.34598 5.37396 5.41795 5.47538 5.52204 5.55878 5.69560 5.71450 5.88959 5.91620 6.01828 6.10171 6.19542 6.27836 6.33495 6.48550 6.54658 6.56441 6.64341 6.76229 6.79197 6.92341 6.93313 7.32844 7.40307 7.41019 7.71937 7.82336 8.34735 8.38681 8.98278 9.22213 9.86280 10.36479 11.32053 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.004399 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.290171 B = 6363.484949 C = 7894.764484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.261 4.261 8 H 0.066 0.934 9 C 0.011 3.989 10 N -0.896 5.896 11 Si 0.893 3.107 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.277 1.277 15 N -0.680 5.680 16 C 0.563 3.437 17 O -0.562 6.562 18 C -0.125 4.125 19 C -0.065 4.065 20 C -0.132 4.132 21 C 0.105 3.895 22 C 0.026 3.974 23 C -0.066 4.066 24 N -0.490 5.490 25 C 0.023 3.977 26 C 0.014 3.986 27 C 0.057 3.943 28 O -0.314 6.314 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.044 0.956 36 H -0.005 1.005 37 H 0.252 0.748 38 H 0.403 0.597 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -1.631 13.614 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.390 4.390 8 H 0.084 0.916 9 C -0.188 4.188 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.330 5.330 16 C 0.350 3.650 17 O -0.443 6.443 18 C -0.128 4.128 19 C -0.084 4.084 20 C -0.151 4.151 21 C 0.058 3.942 22 C -0.071 4.071 23 C -0.087 4.087 24 N -0.206 5.206 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.018 4.018 28 O -0.228 6.228 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.063 0.937 38 H 0.240 0.760 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.117 0.883 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.767 -0.687 13.734 15.793 hybrid contribution 0.384 -1.302 0.529 1.457 sum -7.383 -1.989 14.263 16.184 Atomic orbital electron populations 1.22159 0.96902 1.01245 1.01535 1.21846 0.91762 0.98463 0.86921 0.90468 1.21196 0.86019 0.97868 0.93593 1.43880 0.98855 1.22635 1.66664 1.20795 0.92950 0.90479 0.93831 1.19050 0.97218 0.89395 1.33354 0.91626 1.24975 0.98613 0.96036 0.99218 1.70057 1.13345 1.21553 1.49050 0.86445 0.80210 0.83008 0.78048 1.21561 1.21676 1.20276 1.45627 1.64602 1.14330 1.08398 1.17946 0.77507 0.86248 0.83273 1.90680 1.52375 1.15634 1.85612 1.19805 1.04581 0.94180 0.94272 1.21143 0.95832 0.93577 0.97886 1.20355 1.04209 1.00961 0.89566 1.18829 0.98681 0.89078 0.87643 1.18690 1.05019 0.91249 0.92118 1.20939 0.97590 1.00195 0.89988 1.58884 1.45734 1.15523 1.00478 1.22574 0.91104 0.94877 1.03777 1.22806 0.99704 0.95261 0.93515 1.23149 0.97324 0.92714 0.88625 1.86183 1.78841 1.34686 1.23044 0.92945 0.92265 0.93021 0.93360 0.92947 0.95393 0.93717 0.98612 0.93716 0.75997 0.84428 0.84618 0.84097 0.90544 0.89652 0.94258 0.88255 0.92573 0.90544 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.04 16 3 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.72 5.36 -4.04 -0.02 2.70 16 5 N -0.60 -14.22 2.82 -181.11 -0.51 -14.73 16 6 C 0.16 4.03 9.01 59.85 0.54 4.57 16 7 C -0.26 -6.58 8.02 -15.06 -0.12 -6.70 16 8 H 0.07 1.59 7.84 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.13 -17.43 -0.09 0.21 16 10 N -0.90 -25.63 10.59 55.49 0.59 -25.05 16 11 Si 0.89 21.08 29.57 -169.99 -5.03 16.05 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 N -0.68 -13.42 4.44 -54.82 -0.24 -13.66 16 16 C 0.56 11.75 7.73 -12.43 -0.10 11.66 16 17 O -0.56 -13.06 16.00 5.30 0.08 -12.97 16 18 C -0.12 -2.33 5.87 -105.04 -0.62 -2.95 16 19 C -0.06 -1.11 9.53 -39.23 -0.37 -1.49 16 20 C -0.13 -2.10 9.91 -39.46 -0.39 -2.49 16 21 C 0.11 1.66 6.48 -38.89 -0.25 1.40 16 22 C 0.03 0.41 5.82 -83.61 -0.49 -0.07 16 23 C -0.07 -1.14 8.61 -38.91 -0.33 -1.47 16 24 N -0.49 -6.28 4.89 -178.69 -0.87 -7.16 16 25 C 0.02 0.24 8.98 60.06 0.54 0.78 16 26 C 0.01 0.14 5.72 -3.69 -0.02 0.12 16 27 C 0.06 0.58 7.25 37.37 0.27 0.85 16 28 O -0.31 -4.38 10.39 -19.73 -0.20 -4.58 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 35 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.40 7.73 5.42 -40.82 -0.22 7.51 16 39 H 0.14 2.26 6.40 -52.49 -0.34 1.93 16 40 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 41 H 0.14 2.40 5.56 -52.48 -0.29 2.11 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.97 6.09 -51.93 -0.32 0.66 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 47 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 48 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -32.26 382.66 -9.04 -41.30 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.32 Total: 7.97 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.30 Total: 7.07 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -1.04 Total: -60.60 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.12 Total: -17.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.26 -9.04 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754316476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.912 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.29 seconds