Wall clock time and date at job start Tue Mar 31 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47059 * 2 1 4 4 C 1.52999 * 109.46813 * 119.99857 * 2 1 3 5 5 N 1.46505 * 109.46954 * 175.00145 * 4 2 1 6 6 C 1.46504 * 119.99515 * 270.00163 * 5 4 2 7 7 C 1.36931 * 120.00453 * 89.99624 * 5 4 2 8 8 H 1.08006 * 119.99723 * 23.67464 * 7 5 4 9 9 C 1.38810 * 120.00494 * 203.67376 * 7 5 4 10 10 N 1.31623 * 119.99873 * 11.22503 * 9 7 5 11 11 Si 1.86798 * 120.00322 * 191.22977 * 9 7 5 12 12 H 1.48491 * 109.47290 * 59.99536 * 11 9 7 13 13 H 1.48505 * 109.47161 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46865 * 299.99828 * 11 9 7 15 15 N 1.46501 * 109.46809 * 239.99685 * 2 1 3 16 16 C 1.34773 * 119.99877 * 85.00256 * 15 2 1 17 17 O 1.21582 * 120.00379 * 359.97438 * 16 15 2 18 18 C 1.47618 * 119.99900 * 179.97438 * 16 15 2 19 19 C 1.39695 * 120.09552 * 0.02562 * 18 16 15 20 20 C 1.37697 * 119.88061 * 180.02562 * 19 18 16 21 21 C 1.39080 * 120.41139 * 0.02562 * 20 19 18 22 22 C 1.39241 * 120.10477 * 359.84226 * 21 20 19 23 23 C 1.38737 * 119.66674 * 0.20652 * 22 21 20 24 24 N 1.39910 * 121.84688 * 180.27485 * 22 21 20 25 25 C 1.46903 * 111.00070 * 215.16926 * 24 22 21 26 26 C 1.46747 * 112.11767 * 339.94392 * 24 22 21 27 27 C 1.53425 * 108.58376 * 50.24271 * 26 24 22 28 28 O 1.36016 * 118.58845 * 179.53076 * 21 20 19 29 29 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46958 * 300.00336 * 1 2 3 31 31 H 1.08997 * 109.47152 * 60.00298 * 1 2 3 32 32 H 1.08995 * 109.47291 * 294.99406 * 4 2 1 33 33 H 1.09000 * 109.47549 * 55.00149 * 4 2 1 34 34 H 1.08997 * 109.47497 * 94.62374 * 6 5 4 35 35 H 1.09001 * 109.46782 * 214.61748 * 6 5 4 36 36 H 1.08996 * 109.47168 * 334.61640 * 6 5 4 37 37 H 0.96996 * 120.00681 * 180.02562 * 10 9 7 38 38 H 0.97005 * 120.00062 * 264.99838 * 15 2 1 39 39 H 1.07995 * 120.06217 * 0.04136 * 19 18 16 40 40 H 1.08002 * 119.79631 * 180.02562 * 20 19 18 41 41 H 1.08005 * 119.93582 * 179.89781 * 23 22 21 42 42 H 1.08995 * 109.46982 * 181.45308 * 25 24 22 43 43 H 1.09007 * 109.46677 * 301.45193 * 25 24 22 44 44 H 1.08997 * 109.47094 * 61.44620 * 25 24 22 45 45 H 1.09004 * 109.62009 * 169.96757 * 26 24 22 46 46 H 1.09002 * 109.62115 * 290.51335 * 26 24 22 47 47 H 1.09004 * 109.77165 * 56.28198 * 27 26 24 48 48 H 1.08997 * 109.77673 * 177.07474 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9920 0.5612 7 6 4.2799 0.1648 1.7240 8 1 3.8837 0.8065 2.4972 9 6 5.5796 0.3449 1.2710 10 7 5.9915 -0.2794 0.1880 11 14 6.7441 1.4732 2.1985 12 1 6.9139 0.9759 3.5873 13 1 8.0623 1.4942 1.5149 14 1 6.1816 2.8472 2.2301 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8575 1.1612 -2.4119 18 6 2.6395 -0.7142 -3.5623 19 6 2.9723 -2.0696 -3.5017 20 6 3.4318 -2.7141 -4.6285 21 6 3.5677 -2.0240 -5.8282 22 6 3.2358 -0.6735 -5.8986 23 6 2.7735 -0.0201 -4.7654 24 7 3.3530 0.0546 -7.0876 25 6 3.7663 1.4384 -6.8190 26 6 4.2620 -0.5897 -8.0426 27 6 3.8559 -2.0622 -8.1870 28 8 4.0341 -2.6947 -6.9157 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7198 1.2952 34 1 4.3547 -1.7638 -0.4797 35 1 5.0463 -2.2398 1.0897 36 1 3.4420 -2.8396 0.6055 37 1 6.8998 -0.1539 -0.1285 38 1 2.2490 -1.6319 -1.1526 39 1 2.8691 -2.6110 -2.5730 40 1 3.6882 -3.7622 -4.5802 41 1 2.5164 1.0278 -4.8147 42 1 3.8247 1.9889 -7.7579 43 1 3.0371 1.9146 -6.1634 44 1 4.7435 1.4386 -6.3362 45 1 4.1882 -0.0932 -9.0102 46 1 5.2856 -0.5269 -7.6732 47 1 2.8105 -2.1286 -8.4885 48 1 4.4866 -2.5474 -8.9319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754316477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:19 Heat of formation + Delta-G solvation = -4.951840 kcal Electronic energy + Delta-G solvation = -29730.805677 eV Core-core repulsion = 25787.281788 eV Total energy + Delta-G solvation = -3943.523889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.15914 -39.34497 -37.29657 -36.70185 -36.14453 -33.98240 -31.72040 -30.84764 -30.48066 -29.96727 -28.89007 -26.15432 -25.66355 -25.44847 -24.58389 -22.74337 -21.69411 -21.15425 -20.17196 -19.46126 -18.34284 -17.44108 -16.90820 -16.73030 -15.95468 -15.45045 -15.17370 -14.84582 -14.73908 -14.58461 -14.28337 -14.06084 -13.76025 -13.74153 -13.56039 -13.20887 -13.11293 -12.82381 -12.45436 -12.27394 -12.10784 -11.94273 -11.90208 -11.63788 -11.40329 -11.09893 -11.00379 -10.80822 -10.77162 -10.74860 -10.52483 -10.18637 -10.01672 -9.95222 -9.82812 -9.33533 -8.58051 -8.48995 -8.28823 -7.68579 -6.71619 -5.69859 -3.16250 1.07052 1.38110 2.99350 3.25495 3.41551 3.46504 3.46692 3.47855 3.85111 4.16956 4.29280 4.53082 4.55908 4.74521 4.77758 5.08464 5.12215 5.20521 5.22781 5.26763 5.32183 5.38223 5.43731 5.47390 5.52258 5.69447 5.73302 5.81612 5.88436 6.01886 6.04348 6.13523 6.22922 6.28054 6.45438 6.49651 6.54084 6.58133 6.66040 6.71458 6.85236 6.93212 7.22966 7.32479 7.33943 7.68665 7.82743 8.18362 8.42065 8.86823 9.25683 9.88043 10.36382 11.35113 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003552 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.178715 B = 7879.942551 C = 8596.810972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.086 0.914 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.691 5.691 16 C 0.564 3.436 17 O -0.552 6.552 18 C -0.125 4.125 19 C -0.069 4.069 20 C -0.130 4.130 21 C 0.106 3.894 22 C 0.028 3.972 23 C -0.065 4.065 24 N -0.490 5.490 25 C 0.021 3.979 26 C 0.012 3.988 27 C 0.059 3.941 28 O -0.313 6.313 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.033 0.967 35 H 0.043 0.957 36 H -0.006 1.006 37 H 0.251 0.749 38 H 0.394 0.606 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -5.102 -15.430 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.015 3.985 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.341 5.341 16 C 0.351 3.649 17 O -0.432 6.432 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.149 4.149 21 C 0.059 3.941 22 C -0.069 4.069 23 C -0.086 4.086 24 N -0.206 5.206 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.017 4.017 28 O -0.227 6.227 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.013 0.987 37 H 0.062 0.938 38 H 0.229 0.771 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.972 -4.406 -15.795 17.819 hybrid contribution 1.590 0.453 0.510 1.730 sum -5.381 -3.953 -15.286 16.680 Atomic orbital electron populations 1.22157 0.96860 1.01103 1.01698 1.21884 0.91665 0.99218 0.86277 0.89574 1.21208 0.85830 0.97212 0.94353 1.43866 0.99022 1.20848 1.68150 1.20871 0.94546 0.85039 0.98006 1.19122 0.94634 1.10706 1.14276 0.91515 1.25010 0.98870 0.99000 0.96284 1.70022 1.17236 1.45555 1.21968 0.86368 0.80350 0.80834 0.79159 1.21125 1.21740 1.20969 1.45686 1.65633 1.13636 1.09107 1.17946 0.77502 0.86326 0.83116 1.90705 1.51580 1.15536 1.85372 1.19811 1.04606 0.94213 0.94295 1.21041 0.96623 0.93396 0.97786 1.20324 1.03779 1.00534 0.90245 1.18828 0.97797 0.89497 0.88019 1.18715 1.05429 0.92026 0.90752 1.20956 0.97574 1.00481 0.89572 1.58929 1.47992 1.03586 1.10134 1.22601 1.00553 0.86897 1.02476 1.22830 0.95028 0.95862 0.97786 1.23144 1.02774 0.91684 0.84082 1.86196 1.76711 1.45927 1.13843 0.93188 0.92095 0.92928 0.92260 0.94023 0.94893 0.93868 0.98745 0.93841 0.77061 0.84875 0.84513 0.84038 0.90481 0.89660 0.93913 0.88200 0.92350 0.90639 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.04 16 3 H 0.09 1.99 7.58 -51.93 -0.39 1.59 16 4 C 0.14 2.76 5.33 -4.04 -0.02 2.74 16 5 N -0.60 -14.34 2.78 -181.12 -0.50 -14.85 16 6 C 0.16 3.70 7.60 59.85 0.46 4.15 16 7 C -0.26 -7.01 9.66 -15.06 -0.15 -7.16 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 9 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 10 N -0.90 -26.11 10.66 55.49 0.59 -25.52 16 11 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 N -0.69 -13.01 4.36 -54.82 -0.24 -13.25 16 16 C 0.56 11.40 7.73 -12.43 -0.10 11.30 16 17 O -0.55 -12.78 16.00 5.29 0.08 -12.69 16 18 C -0.13 -2.20 5.87 -105.04 -0.62 -2.82 16 19 C -0.07 -1.04 9.53 -39.24 -0.37 -1.42 16 20 C -0.13 -1.82 9.91 -39.47 -0.39 -2.21 16 21 C 0.11 1.53 6.48 -38.90 -0.25 1.28 16 22 C 0.03 0.41 5.82 -83.61 -0.49 -0.07 16 23 C -0.06 -1.06 8.61 -38.91 -0.33 -1.40 16 24 N -0.49 -5.95 4.89 -178.68 -0.87 -6.82 16 25 C 0.02 0.22 8.98 60.07 0.54 0.76 16 26 C 0.01 0.11 5.72 -3.69 -0.02 0.09 16 27 C 0.06 0.53 7.25 37.38 0.27 0.80 16 28 O -0.31 -3.99 10.39 -19.79 -0.21 -4.19 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 33 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.03 0.81 6.90 -51.93 -0.36 0.45 16 35 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 36 H -0.01 -0.12 7.84 -51.93 -0.41 -0.52 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.39 6.76 5.20 -40.82 -0.21 6.55 16 39 H 0.13 1.82 6.40 -52.49 -0.34 1.48 16 40 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.14 2.34 5.56 -52.48 -0.29 2.05 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.98 6.09 -51.93 -0.32 0.66 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -33.41 382.20 -9.11 -42.53 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.29 Total: 5.79 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.41 Total: 6.09 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.02 Total: -60.43 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.12 Total: -16.89 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.41 -9.11 -42.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754316477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.576 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds