Wall clock time and date at job start Tue Mar 31 2020 18:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46910 * 109.47006 * 2 1 4 4 C 1.46897 * 110.99574 * 301.04192 * 3 2 1 5 5 C 1.52999 * 109.47490 * 288.94301 * 4 3 2 6 6 C 1.50700 * 109.47566 * 185.03191 * 5 4 3 7 7 H 1.08003 * 119.99876 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00396 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99687 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47153 * 120.00573 * 10 8 6 13 13 H 1.48500 * 109.46911 * 240.00269 * 10 8 6 14 14 C 1.46897 * 110.99707 * 64.99306 * 3 2 1 15 15 C 1.50699 * 109.47291 * 66.05228 * 14 3 2 16 16 O 1.21294 * 119.99830 * 359.97438 * 15 14 3 17 17 N 1.34777 * 120.00262 * 179.97438 * 15 14 3 18 18 C 1.40072 * 120.00296 * 185.81307 * 17 15 14 19 19 C 1.38862 * 120.00025 * 205.98401 * 18 17 15 20 20 C 1.38041 * 120.00117 * 180.27404 * 19 18 17 21 21 C 1.38872 * 120.00041 * 359.51444 * 20 19 18 22 22 N 1.40066 * 120.00512 * 180.23090 * 21 20 19 23 23 C 1.34776 * 120.00214 * 215.03231 * 22 21 20 24 24 C 1.50707 * 120.00120 * 185.34760 * 23 22 21 25 25 O 1.21291 * 119.99703 * 5.34492 * 23 22 21 26 26 C 1.38870 * 119.99417 * 0.48412 * 21 20 19 27 27 C 1.38041 * 120.00451 * 359.74472 * 26 21 20 28 28 H 1.08998 * 109.47463 * 65.06139 * 1 2 3 29 29 H 1.08996 * 109.46555 * 185.05981 * 1 2 3 30 30 H 1.08997 * 109.47014 * 305.05503 * 1 2 3 31 31 H 1.08996 * 109.47314 * 240.00142 * 2 1 3 32 32 H 1.09004 * 109.47387 * 119.99623 * 2 1 3 33 33 H 1.08998 * 109.47525 * 48.94634 * 4 3 2 34 34 H 1.09004 * 109.46959 * 168.94692 * 4 3 2 35 35 H 1.09004 * 109.47033 * 305.03637 * 5 4 3 36 36 H 1.08999 * 109.47099 * 65.03092 * 5 4 3 37 37 H 0.96995 * 120.00238 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.47572 * 306.04538 * 14 3 2 39 39 H 1.09009 * 109.46897 * 186.05133 * 14 3 2 40 40 H 0.97009 * 119.99693 * 5.81170 * 17 15 14 41 41 H 1.08001 * 120.00334 * 359.97438 * 19 18 17 42 42 H 1.08005 * 120.00447 * 179.72467 * 20 19 18 43 43 H 0.97003 * 120.00347 * 35.02741 * 22 21 20 44 44 H 1.08994 * 109.46965 * 59.99960 * 24 23 22 45 45 H 1.08999 * 109.46785 * 179.97438 * 24 23 22 46 46 H 1.08994 * 109.46838 * 299.99898 * 24 23 22 47 47 H 1.08000 * 120.00175 * 179.72723 * 26 21 20 48 48 H 1.08000 * 120.00252 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5284 2.1170 -1.1750 5 6 2.2326 1.5982 -2.4303 6 6 1.8213 2.4305 -3.6174 7 1 1.1273 3.2481 -3.4893 8 6 2.3317 2.1489 -4.8669 9 7 3.1772 1.1537 -5.0229 10 14 1.8224 3.1810 -6.3382 11 1 0.8690 4.2317 -5.8996 12 1 3.0231 3.8202 -6.9339 13 1 1.1706 2.3120 -7.3506 14 6 1.6486 2.0746 1.2429 15 6 2.3693 1.4397 2.4041 16 8 3.1181 0.5044 2.2150 17 7 2.1818 1.9110 3.6528 18 6 2.9414 1.4032 4.7145 19 6 2.4402 1.4445 6.0088 20 6 3.1911 0.9493 7.0559 21 6 4.4435 0.4005 6.8136 22 7 5.2035 -0.1065 7.8753 23 6 6.5456 0.0154 7.8619 24 6 7.3721 -0.6342 8.9418 25 8 7.0883 0.6479 6.9807 26 6 4.9447 0.3591 5.5191 27 6 4.1958 0.8587 4.4727 28 1 -0.3634 0.4333 -0.9318 29 1 -0.3632 -1.0237 0.0906 30 1 -0.3633 0.5902 0.8412 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.4533 1.9669 -1.2733 34 1 1.7373 3.1801 -1.0544 35 1 3.3121 1.6660 -2.2956 36 1 1.9523 0.5588 -2.6008 37 1 3.5359 0.9554 -5.9019 38 1 0.5722 1.9944 1.3955 39 1 1.9282 3.1259 1.1726 40 1 1.5208 2.6020 3.8162 41 1 1.4649 1.8686 6.1970 42 1 2.8031 0.9854 8.0633 43 1 4.7638 -0.5453 8.6204 44 1 7.2054 -1.7112 8.9285 45 1 8.4277 -0.4281 8.7649 46 1 7.0810 -0.2334 9.9127 47 1 5.9206 -0.0636 5.3311 48 1 4.5858 0.8269 3.4660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007681158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:04 Heat of formation + Delta-G solvation = -59.673508 kcal Electronic energy + Delta-G solvation = -27728.713423 eV Core-core repulsion = 23782.816625 eV Total energy + Delta-G solvation = -3945.896799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84044 -41.13866 -39.54953 -38.44336 -36.39744 -35.19994 -34.86680 -32.15114 -31.94961 -31.74309 -31.00949 -29.15406 -27.62814 -26.01239 -24.31033 -24.27846 -23.39606 -21.56441 -21.44869 -20.68948 -19.02641 -18.68083 -18.39793 -18.03391 -17.77939 -17.17006 -16.63080 -16.46425 -16.45002 -15.88912 -15.50130 -15.32718 -15.20025 -14.84008 -14.69737 -14.30378 -14.19389 -14.02847 -13.91404 -13.76373 -13.74962 -13.31829 -13.24612 -13.04964 -12.97644 -12.83329 -12.48167 -12.41257 -12.34057 -12.11852 -11.91238 -11.56322 -11.43512 -11.23196 -11.11474 -10.75132 -10.53809 -10.42996 -9.91970 -9.08127 -8.67145 -8.18105 -6.30008 0.15407 0.41197 1.40621 1.41750 1.46140 1.54821 1.70973 1.92608 2.16790 2.41711 2.85143 3.14936 3.15431 3.67626 3.81583 3.98195 4.01858 4.08940 4.17884 4.31724 4.36751 4.42154 4.43413 4.49722 4.55351 4.58999 4.59427 4.64275 4.66836 4.80961 4.97048 5.07164 5.09135 5.11127 5.17815 5.30388 5.31963 5.33428 5.49266 5.51250 5.55705 5.67046 5.81356 6.05575 6.12457 6.18010 6.34264 6.46994 6.52354 6.89095 7.17171 7.19342 7.39422 8.94595 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.001921 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.874102 B =14570.514376 C =15258.685179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.078 3.922 5 C 0.036 3.964 6 C -0.538 4.538 7 H 0.067 0.933 8 C -0.005 4.005 9 N -0.936 5.936 10 Si 0.970 3.030 11 H -0.256 1.256 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.035 3.965 15 C 0.512 3.488 16 O -0.541 6.541 17 N -0.657 5.657 18 C 0.128 3.872 19 C -0.120 4.120 20 C -0.110 4.110 21 C 0.113 3.887 22 N -0.660 5.660 23 C 0.498 3.502 24 C -0.162 4.162 25 O -0.584 6.584 26 C -0.120 4.120 27 C -0.138 4.138 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.070 0.930 35 H -0.017 1.017 36 H -0.013 1.013 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.430 0.570 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.431 0.569 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.121 0.879 47 H 0.106 0.894 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 -0.669 35.427 35.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.078 4.078 3 N -0.269 5.269 4 C -0.049 4.049 5 C -0.001 4.001 6 C -0.576 4.576 7 H 0.086 0.914 8 C -0.202 4.202 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.180 1.180 12 H -0.207 1.207 13 H -0.205 1.205 14 C -0.095 4.095 15 C 0.301 3.699 16 O -0.416 6.416 17 N -0.304 5.304 18 C 0.033 3.967 19 C -0.141 4.141 20 C -0.131 4.131 21 C 0.018 3.982 22 N -0.307 5.307 23 C 0.289 3.711 24 C -0.221 4.221 25 O -0.464 6.464 26 C -0.141 4.141 27 C -0.159 4.159 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.001 0.999 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.141 0.859 40 H 0.270 0.730 41 H 0.187 0.813 42 H 0.189 0.811 43 H 0.271 0.729 44 H 0.133 0.867 45 H 0.106 0.894 46 H 0.140 0.860 47 H 0.125 0.875 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.434 -0.993 34.500 34.685 hybrid contribution -0.711 0.156 -1.197 1.401 sum -4.145 -0.837 33.303 33.571 Atomic orbital electron populations 1.22322 0.96591 1.02977 1.02049 1.22131 0.93909 0.89939 1.01827 1.61836 1.60926 1.02669 1.01461 1.22070 0.97084 0.97031 0.88704 1.18887 0.94359 0.94850 0.92030 1.21675 1.26699 1.15713 0.93559 0.91443 1.26051 0.94988 0.96579 1.02606 1.70152 1.32374 1.31038 1.24044 0.85334 0.78216 0.78666 0.78404 1.17950 1.20732 1.20519 1.22098 0.99844 0.99898 0.87688 1.21155 0.81789 0.82718 0.84283 1.90676 1.37599 1.28703 1.84647 1.43391 1.40216 1.41419 1.05399 1.17950 0.90563 0.99461 0.88735 1.21022 1.01481 1.02288 0.89314 1.21065 0.92965 0.98076 1.00973 1.17858 0.93490 0.99783 0.87019 1.43526 1.06456 1.58221 1.22530 1.21991 0.82552 0.79168 0.87420 1.21947 0.99822 1.03174 0.97138 1.90773 1.72535 1.42512 1.40532 1.20873 0.99801 1.01438 0.91947 1.21124 0.93999 1.01284 0.99495 0.93069 0.91235 0.90826 0.93745 0.90323 0.93820 0.91114 0.99866 0.99457 0.92938 0.88496 0.85865 0.73036 0.81303 0.81124 0.72870 0.86677 0.89436 0.86028 0.87549 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 9.22 71.98 0.66 -4.61 16 2 C 0.05 1.85 5.53 86.30 0.48 2.33 16 3 N -0.55 -20.53 4.41 -900.76 -3.97 -24.51 16 4 C 0.08 3.24 4.72 86.30 0.41 3.65 16 5 C 0.04 2.01 4.90 29.85 0.15 2.16 16 6 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 7 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 8 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 9 N -0.94 -59.43 13.29 21.45 0.28 -59.15 16 10 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.04 0.92 5.28 85.56 0.45 1.37 16 15 C 0.51 14.36 7.30 87.66 0.64 15.00 16 16 O -0.54 -20.56 11.58 -3.07 -0.04 -20.60 16 17 N -0.66 -12.90 5.37 -303.39 -1.63 -14.53 16 18 C 0.13 2.88 6.41 38.13 0.24 3.13 16 19 C -0.12 -1.71 9.93 22.37 0.22 -1.49 16 20 C -0.11 -1.44 9.96 22.37 0.22 -1.21 16 21 C 0.11 2.19 6.25 38.13 0.24 2.43 16 22 N -0.66 -8.33 5.34 -303.38 -1.62 -9.95 16 23 C 0.50 8.39 7.67 87.66 0.67 9.06 16 24 C -0.16 -0.92 10.32 71.24 0.74 -0.18 16 25 O -0.58 -17.08 14.87 -3.07 -0.05 -17.12 16 26 C -0.12 -3.36 8.65 22.37 0.19 -3.17 16 27 C -0.14 -4.16 8.70 22.37 0.19 -3.97 16 28 H 0.05 1.65 6.44 -2.39 -0.02 1.63 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.71 6.18 -2.39 -0.01 1.70 16 31 H 0.04 1.96 6.81 -2.39 -0.02 1.94 16 32 H 0.08 2.96 5.81 -2.38 -0.01 2.94 16 33 H 0.04 1.69 5.85 -2.39 -0.01 1.68 16 34 H 0.07 2.77 7.83 -2.38 -0.02 2.75 16 35 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 36 H -0.01 -0.78 6.97 -2.39 -0.02 -0.80 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.10 1.90 6.08 -2.39 -0.01 1.89 16 39 H 0.12 2.74 7.87 -2.38 -0.02 2.72 16 40 H 0.43 4.47 8.79 -92.70 -0.81 3.66 16 41 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.43 1.34 8.82 -92.71 -0.82 0.52 16 44 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.09 0.71 8.12 -2.39 -0.02 0.69 16 46 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.11 3.45 6.52 -2.91 -0.02 3.43 16 48 H 0.11 4.17 5.88 -2.91 -0.02 4.15 16 Total: -1.00 -90.17 387.85 0.58 -89.59 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.63 Total: 15.36 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.21 Total: -6.18 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -6.94 Total: -108.13 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.08 Total: -37.72 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -90.17 0.58 -89.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007681158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.913 kcal (2) G-P(sol) polarization free energy of solvation -90.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds