Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47100 * 2 1 4 4 C 1.46897 * 111.00156 * 73.30306 * 3 2 1 5 5 C 1.50699 * 109.46883 * 285.95468 * 4 3 2 6 6 H 1.07999 * 120.00378 * 356.68460 * 5 4 3 7 7 C 1.37882 * 119.99711 * 176.68700 * 5 4 3 8 8 N 1.31508 * 120.00166 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99778 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47653 * 59.99424 * 9 7 5 11 11 H 1.48499 * 109.47341 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46797 * 299.99650 * 9 7 5 13 13 C 1.46901 * 110.99735 * 197.25523 * 3 2 1 14 14 H 1.09000 * 109.47007 * 186.04443 * 13 3 2 15 15 C 1.52999 * 109.47575 * 306.04630 * 13 3 2 16 16 C 1.50702 * 109.47454 * 66.05005 * 13 3 2 17 17 O 1.21296 * 119.99569 * 359.97438 * 16 13 3 18 18 N 1.34773 * 120.00367 * 179.97438 * 16 13 3 19 19 C 1.39925 * 119.99928 * 185.17957 * 18 16 13 20 20 C 1.38945 * 120.03288 * 214.56527 * 19 18 16 21 21 C 1.38134 * 120.06854 * 180.02562 * 20 19 18 22 22 C 1.38175 * 120.14473 * 0.02562 * 21 20 19 23 23 C 1.38908 * 120.06922 * 359.97438 * 22 21 20 24 24 N 1.39917 * 120.03795 * 179.97438 * 23 22 21 25 25 C 1.34776 * 120.00249 * 320.29741 * 24 23 22 26 26 C 1.50698 * 120.00312 * 184.39802 * 25 24 23 27 27 O 1.21289 * 119.99426 * 4.40144 * 25 24 23 28 28 C 1.38725 * 120.03558 * 34.58592 * 19 18 16 29 29 H 1.09008 * 109.47047 * 171.80885 * 1 2 3 30 30 H 1.08999 * 109.47338 * 291.80507 * 1 2 3 31 31 H 1.08995 * 109.47658 * 51.80639 * 1 2 3 32 32 H 1.09005 * 109.47209 * 239.99841 * 2 1 3 33 33 H 1.09004 * 109.47209 * 120.00587 * 2 1 3 34 34 H 1.09001 * 109.47087 * 45.95088 * 4 3 2 35 35 H 1.08994 * 109.47437 * 165.95416 * 4 3 2 36 36 H 0.97006 * 120.00241 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46904 * 300.00354 * 15 13 3 38 38 H 1.09000 * 109.47105 * 59.99874 * 15 13 3 39 39 H 1.08996 * 109.47057 * 180.02562 * 15 13 3 40 40 H 0.97001 * 119.99803 * 5.18305 * 18 16 13 41 41 H 1.08004 * 119.96750 * 0.02718 * 20 19 18 42 42 H 1.08009 * 119.92947 * 179.74432 * 21 20 19 43 43 H 1.08001 * 119.96823 * 179.97438 * 22 21 20 44 44 H 0.97001 * 120.00318 * 140.30524 * 24 23 22 45 45 H 1.08996 * 109.46724 * 60.00634 * 26 25 24 46 46 H 1.09004 * 109.47189 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.46977 * 300.00062 * 26 25 24 48 48 H 1.07993 * 120.06973 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8236 2.0127 1.3136 5 6 0.3635 2.3331 1.5043 6 1 -0.3396 2.1437 0.7067 7 6 -0.0748 2.8682 2.6971 8 7 0.7813 3.0984 3.6684 9 14 -1.8848 3.2647 2.9338 10 1 -2.6874 2.0248 2.7803 11 1 -2.0950 3.8262 4.2923 12 1 -2.3107 4.2592 1.9164 13 6 3.4299 1.4447 -0.4068 14 1 3.7973 2.4648 -0.2955 15 6 4.2555 0.5061 0.4755 16 6 3.5557 1.0200 -1.8473 17 8 2.5677 0.6987 -2.4733 18 7 4.7659 0.9972 -2.4400 19 6 4.8711 0.7083 -3.8050 20 6 5.9660 -0.0009 -4.2834 21 6 6.0708 -0.2861 -5.6309 22 6 5.0882 0.1330 -6.5073 23 6 3.9911 0.8423 -6.0354 24 7 2.9968 1.2668 -6.9236 25 6 3.3361 1.7388 -8.1396 26 6 2.2748 2.2879 -9.0578 27 8 4.4956 1.7215 -8.4948 28 6 3.8825 1.1299 -4.6822 29 1 -0.3633 -1.0173 -0.1464 30 1 -0.3634 0.3817 0.9541 31 1 -0.3634 0.6354 -0.8076 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1505 1.3277 2.0960 35 1 2.4073 2.9315 1.3679 36 1 0.4729 3.4745 4.5078 37 1 4.1645 0.8133 1.5174 38 1 3.8881 -0.5140 0.3641 39 1 5.3019 0.5509 0.1739 40 1 5.5640 1.1811 -1.9202 41 1 6.7359 -0.3295 -3.6010 42 1 6.9250 -0.8339 -6.0009 43 1 5.1733 -0.0912 -7.5604 44 1 2.0632 1.2215 -6.6642 45 1 1.7793 3.1313 -8.5769 46 1 2.7355 2.6193 -9.9884 47 1 1.5420 1.5101 -9.2723 48 1 3.0309 1.6818 -4.3129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -27.349142 kcal Electronic energy + Delta-G solvation = -28732.023274 eV Core-core repulsion = 24787.528165 eV Total energy + Delta-G solvation = -3944.495109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88972 -40.12701 -38.47430 -36.82589 -35.31441 -34.18890 -32.81094 -31.50365 -31.04616 -29.75597 -28.77970 -28.41999 -26.48960 -24.58242 -22.92287 -22.80875 -22.37576 -21.02899 -20.21789 -19.26308 -18.32352 -17.28625 -17.00001 -16.38342 -16.21787 -15.80753 -15.60531 -15.21547 -14.74943 -14.50802 -14.38028 -14.10263 -14.03127 -13.75598 -13.55765 -13.19970 -13.10776 -12.91757 -12.53654 -12.27036 -12.17621 -12.02794 -11.94720 -11.65117 -11.53826 -11.16223 -11.01947 -10.89352 -10.78532 -10.73433 -10.40865 -10.22158 -10.15129 -10.00492 -9.77923 -9.16048 -9.06202 -8.48618 -8.39252 -8.05084 -7.29268 -6.03499 -4.01443 1.12361 1.29336 2.30004 2.79925 2.81924 3.11055 3.33391 3.37415 3.40922 3.74129 4.41036 4.42829 4.78389 4.83384 4.86853 4.92981 4.99570 5.04259 5.18341 5.31082 5.32471 5.33677 5.39835 5.43115 5.51243 5.59724 5.75937 5.97677 6.05587 6.12654 6.17809 6.22451 6.29845 6.34860 6.36203 6.46399 6.51211 6.68085 6.98141 7.00274 7.11506 7.14914 7.31390 7.41223 7.44251 7.82740 7.84655 8.06460 8.16004 8.32197 8.51824 9.04511 9.59967 11.07213 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.002633 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.109963 B =10632.082444 C =11830.316523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 N -0.514 5.514 4 C 0.194 3.806 5 C -0.503 4.503 6 H 0.075 0.925 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.066 3.934 14 H 0.105 0.895 15 C -0.182 4.182 16 C 0.520 3.480 17 O -0.496 6.496 18 N -0.682 5.682 19 C 0.174 3.826 20 C -0.161 4.161 21 C -0.086 4.086 22 C -0.136 4.136 23 C 0.157 3.843 24 N -0.674 5.674 25 C 0.511 3.489 26 C -0.173 4.173 27 O -0.530 6.530 28 C -0.142 4.142 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.019 0.981 34 H -0.001 1.001 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.410 0.590 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.414 0.586 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -5.508 -18.543 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 N -0.239 5.239 4 C 0.070 3.930 5 C -0.542 4.542 6 H 0.093 0.907 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.047 4.047 14 H 0.123 0.877 15 C -0.241 4.241 16 C 0.307 3.693 17 O -0.367 6.367 18 N -0.329 5.329 19 C 0.078 3.922 20 C -0.182 4.182 21 C -0.105 4.105 22 C -0.157 4.157 23 C 0.063 3.937 24 N -0.320 5.320 25 C 0.299 3.701 26 C -0.233 4.233 27 O -0.406 6.406 28 C -0.165 4.165 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.017 0.983 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.246 0.754 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.250 0.750 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.714 -5.336 -19.378 21.907 hybrid contribution -0.486 -0.053 1.347 1.432 sum 8.228 -5.389 -18.031 20.539 Atomic orbital electron populations 1.22032 0.95084 0.98652 1.04556 1.21906 0.96892 0.88904 0.98288 1.62131 1.11063 1.17484 1.33178 1.19810 0.97811 0.93452 0.81949 1.21337 0.93184 1.40318 0.99332 0.90714 1.24985 0.97759 0.95972 0.96036 1.69941 1.34173 1.44976 1.04994 0.86602 0.85255 0.78797 0.77043 1.20191 1.21476 1.20188 1.21662 0.93138 1.00487 0.89404 0.87682 1.22458 0.99086 1.00577 1.01978 1.21176 0.81970 0.76226 0.89880 1.90671 1.36452 1.44193 1.65407 1.43761 1.10458 1.71121 1.07523 1.17442 0.95384 0.96001 0.83330 1.20905 0.99409 1.01508 0.96380 1.20779 0.98428 0.98991 0.92315 1.21078 0.94770 0.99158 1.00696 1.17487 0.90950 0.96479 0.88745 1.43586 1.09870 1.63418 1.15167 1.21007 0.90585 0.76801 0.81665 1.21928 0.98531 1.02917 0.99916 1.90737 1.20658 1.54964 1.74229 1.20918 1.01587 1.02845 0.91104 0.95283 0.89322 0.92765 0.92270 0.96293 0.98286 0.95732 0.92956 0.90501 0.92032 0.92726 0.75413 0.85655 0.85463 0.85097 0.74973 0.88900 0.88622 0.89034 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.58 37.16 0.32 -2.68 16 2 C 0.07 1.37 4.05 -3.83 -0.02 1.35 16 3 N -0.51 -10.80 4.17 -229.48 -0.96 -11.75 16 4 C 0.19 4.79 4.12 -4.98 -0.02 4.77 16 5 C -0.50 -13.56 7.01 -34.44 -0.24 -13.80 16 6 H 0.07 2.01 5.69 -52.49 -0.30 1.71 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.22 16 9 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.07 1.09 2.73 -68.86 -0.19 0.91 16 14 H 0.11 1.67 7.84 -51.93 -0.41 1.26 16 15 C -0.18 -2.56 8.42 37.16 0.31 -2.25 16 16 C 0.52 8.16 6.43 -10.99 -0.07 8.09 16 17 O -0.50 -9.30 12.27 5.54 0.07 -9.24 16 18 N -0.68 -8.28 5.26 -9.88 -0.05 -8.33 16 19 C 0.17 2.21 6.25 -83.72 -0.52 1.68 16 20 C -0.16 -1.72 9.96 -39.36 -0.39 -2.11 16 21 C -0.09 -0.91 10.03 -39.64 -0.40 -1.30 16 22 C -0.14 -1.66 8.67 -39.36 -0.34 -2.00 16 23 C 0.16 1.97 6.21 -83.72 -0.52 1.45 16 24 N -0.67 -6.75 5.32 -9.88 -0.05 -6.80 16 25 C 0.51 5.16 7.76 -10.99 -0.09 5.07 16 26 C -0.17 -0.96 10.32 36.00 0.37 -0.59 16 27 O -0.53 -7.40 14.83 5.55 0.08 -7.31 16 28 C -0.14 -1.94 8.57 -39.20 -0.34 -2.27 16 29 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.09 2.03 5.47 -51.93 -0.28 1.75 16 31 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 32 H 0.06 1.16 5.82 -51.93 -0.30 0.86 16 33 H 0.02 0.38 6.98 -51.93 -0.36 0.02 16 34 H 0.00 -0.02 7.15 -51.93 -0.37 -0.39 16 35 H 0.02 0.64 7.77 -51.93 -0.40 0.23 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 1.21 7.12 -51.93 -0.37 0.84 16 38 H 0.06 0.90 6.72 -51.93 -0.35 0.55 16 39 H 0.05 0.57 7.46 -51.93 -0.39 0.18 16 40 H 0.41 3.69 8.10 -40.82 -0.33 3.36 16 41 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 43 H 0.13 1.62 6.58 -52.49 -0.35 1.28 16 44 H 0.41 3.14 8.83 -40.82 -0.36 2.78 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.14 2.10 6.51 -52.49 -0.34 1.76 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -33.86 383.49 -8.64 -42.49 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.00 Total: 6.42 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.23 Total: -2.31 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.32 Total: -52.10 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.15 Total: -16.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.86 -8.64 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds