Wall clock time and date at job start Tue Mar 31 2020 18:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47507 * 2 1 4 4 C 1.46505 * 120.00058 * 270.00444 * 3 2 1 5 5 C 1.53003 * 109.46973 * 269.99530 * 4 3 2 6 6 H 1.09003 * 109.47068 * 54.99512 * 5 4 3 7 7 C 1.53002 * 109.46729 * 295.00239 * 5 4 3 8 8 C 1.47193 * 109.47253 * 174.99938 * 5 4 3 9 9 N 5.60021 * 117.10768 * 305.29948 * 2 1 3 10 10 C 1.34773 * 119.99959 * 89.99637 * 3 2 1 11 11 O 1.21290 * 119.99868 * 180.02562 * 10 3 2 12 12 C 1.50696 * 120.00148 * 0.02562 * 10 3 2 13 13 N 1.46901 * 109.47399 * 180.02562 * 12 10 3 14 14 C 1.46902 * 111.00040 * 66.04221 * 13 12 10 15 15 C 1.50699 * 109.46736 * 193.95638 * 14 13 12 16 16 H 1.08002 * 120.00696 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99890 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00153 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47392 * 59.99875 * 19 17 15 21 21 H 1.48498 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.46809 * 299.99828 * 19 17 15 23 23 C 1.46899 * 111.00103 * 190.00043 * 13 12 10 24 24 C 1.50703 * 109.47107 * 169.99758 * 23 13 12 25 25 C 1.34515 * 125.79060 * 89.99940 * 24 23 13 26 26 C 1.41380 * 106.83832 * 179.97438 * 25 24 23 27 27 C 1.34506 * 106.84493 * 359.97438 * 26 25 24 28 28 O 1.34306 * 125.78568 * 269.69278 * 24 23 13 29 29 H 1.09003 * 109.47472 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46944 * 300.00152 * 1 2 3 31 31 H 1.09001 * 109.47173 * 60.00347 * 1 2 3 32 32 H 1.09005 * 109.47394 * 240.00032 * 2 1 3 33 33 H 1.09007 * 109.47212 * 120.00117 * 2 1 3 34 34 H 1.08999 * 109.47061 * 29.99178 * 4 3 2 35 35 H 1.09002 * 109.46860 * 149.99434 * 4 3 2 36 36 H 1.08998 * 109.47679 * 59.99994 * 7 5 4 37 37 H 1.09009 * 109.46344 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.46751 * 299.99467 * 7 5 4 39 39 H 1.08998 * 109.47243 * 59.99473 * 12 10 3 40 40 H 1.09007 * 109.47299 * 299.99714 * 12 10 3 41 41 H 1.08994 * 109.47188 * 313.95207 * 14 13 12 42 42 H 1.08999 * 109.46735 * 73.95825 * 14 13 12 43 43 H 0.96999 * 120.00134 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.47043 * 289.99738 * 23 13 12 45 45 H 1.09001 * 109.47354 * 49.99799 * 23 13 12 46 46 H 1.07996 * 126.58016 * 0.03378 * 25 24 23 47 47 H 1.08006 * 126.57610 * 179.97438 * 26 25 24 48 48 H 1.08005 * 125.79499 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7105 6 1 3.9003 0.7595 -1.7549 7 6 4.6623 2.4800 -0.7061 8 6 3.9188 2.4236 -3.0414 9 7 4.0818 2.8806 -4.0685 10 6 2.2430 2.0165 1.1672 11 8 2.6469 3.1601 1.1672 12 6 1.9922 1.3060 2.4723 13 7 2.3097 2.2062 3.5889 14 6 1.3824 3.3449 3.6271 15 6 1.9292 4.4072 4.5455 16 1 2.8714 4.2523 5.0501 17 6 1.2264 5.5772 4.7418 18 7 0.0793 5.7662 4.1271 19 14 1.9044 6.8943 5.8797 20 1 3.2259 7.3495 5.3782 21 1 0.9664 8.0449 5.9194 22 1 2.0595 6.3354 7.2468 23 6 2.3065 1.4815 4.8666 24 6 2.8706 2.3670 5.9478 25 6 2.1639 3.2079 6.7243 26 6 3.0856 3.8338 7.5947 27 6 4.3002 3.3377 7.2984 28 8 4.1633 2.4462 6.3032 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 4.5059 2.0415 0.2794 37 1 5.6918 2.3090 -1.0211 38 1 4.4696 3.5519 -0.6617 39 1 2.6226 0.4186 2.5298 40 1 0.9443 1.0115 2.5302 41 1 1.2694 3.7553 2.6237 42 1 0.4121 3.0111 3.9946 43 1 -0.4149 6.5894 4.2648 44 1 1.2848 1.2012 5.1228 45 1 2.9179 0.5836 4.7767 46 1 1.0971 3.3724 6.6902 47 1 2.8580 4.5693 8.3522 48 1 5.2277 3.6075 7.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081518138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:24 Heat of formation + Delta-G solvation = 38.818854 kcal Electronic energy + Delta-G solvation = -29902.777959 eV Core-core repulsion = 25961.152110 eV Total energy + Delta-G solvation = -3941.625849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71437 -40.07026 -37.48884 -36.46063 -35.63869 -33.78059 -32.62075 -31.90721 -30.22036 -30.10926 -28.12971 -27.05324 -25.92628 -23.77511 -23.62825 -22.74598 -21.14429 -20.80127 -19.38424 -18.75762 -17.79907 -17.10321 -16.73279 -16.27413 -15.97666 -15.43915 -14.90269 -14.85947 -14.49106 -14.14098 -14.04273 -13.91583 -13.78920 -13.39628 -13.22146 -13.17531 -12.80187 -12.65294 -12.46427 -12.29278 -12.00871 -11.95221 -11.86698 -11.76749 -11.74646 -11.53077 -11.37793 -11.17792 -11.05464 -10.91385 -10.90163 -10.53780 -10.39638 -9.93899 -9.36525 -9.14871 -8.62993 -8.58656 -8.27897 -7.40291 -7.22182 -5.88869 -3.77838 2.51820 2.60553 2.66876 2.99596 3.08020 3.42491 3.46498 3.51090 3.62055 3.87538 3.91883 4.54675 4.58251 4.72233 4.79064 4.89602 5.00972 5.04971 5.13215 5.26851 5.45692 5.48204 5.50209 5.52320 5.60782 5.63762 5.70062 5.75230 5.78282 5.79739 5.90257 5.95674 5.98075 6.10703 6.16396 6.35607 6.54981 6.72961 6.95097 6.97849 7.17773 7.25243 7.43428 7.48387 7.49812 7.90435 8.08639 8.12224 8.21424 8.54316 8.66960 9.20241 9.76539 11.22656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012725 B = 0.003627 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.921734 B = 7717.339134 C = 8217.960347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 N -0.623 5.623 4 C 0.127 3.873 5 C -0.011 4.011 6 H 0.111 0.889 7 C -0.139 4.139 8 C 0.217 3.783 9 N -0.440 5.440 10 C 0.513 3.487 11 O -0.481 6.481 12 C 0.040 3.960 13 N -0.520 5.520 14 C 0.188 3.812 15 C -0.481 4.481 16 H 0.075 0.925 17 C 0.056 3.944 18 N -0.904 5.904 19 Si 0.882 3.118 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.266 1.266 23 C 0.152 3.848 24 C -0.005 4.005 25 C -0.129 4.129 26 C -0.219 4.219 27 C -0.067 4.067 28 O -0.178 6.178 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.051 0.949 42 H -0.015 1.015 43 H 0.257 0.743 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.142 0.858 47 H 0.133 0.867 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -15.969 -3.949 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.360 5.360 4 C 0.002 3.998 5 C -0.034 4.034 6 H 0.129 0.871 7 C -0.197 4.197 8 C -0.101 4.101 9 N -0.116 5.116 10 C 0.300 3.700 11 O -0.351 6.351 12 C -0.091 4.091 13 N -0.246 5.246 14 C 0.064 3.936 15 C -0.519 4.519 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.545 5.545 19 Si 0.710 3.290 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.191 1.191 23 C 0.024 3.976 24 C -0.055 4.055 25 C -0.149 4.149 26 C -0.239 4.239 27 C -0.135 4.135 28 O -0.075 6.075 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.003 0.997 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.160 0.840 47 H 0.151 0.849 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.866 -14.473 -5.702 16.029 hybrid contribution -0.790 0.707 1.076 1.511 sum 3.076 -13.766 -4.626 14.844 Atomic orbital electron populations 1.22246 0.95972 1.02112 1.03013 1.21547 0.94497 0.82495 1.03142 1.48017 1.68250 1.14464 1.05298 1.21271 0.92445 1.00328 0.85784 1.19368 0.99021 1.00584 0.84404 0.87078 1.21826 0.97048 1.02536 0.98307 1.29110 0.93256 0.93394 0.94366 1.81210 1.08506 1.09284 1.12554 1.20700 0.77498 0.87103 0.84720 1.90819 1.41428 1.16628 1.86225 1.21910 1.00169 0.96132 0.90878 1.61991 1.55278 1.08140 0.99197 1.19978 0.87661 0.86546 0.99427 1.21467 1.06272 0.99909 1.24274 0.90736 1.24817 0.95105 0.97838 0.96641 1.69951 1.14624 1.26323 1.43566 0.86810 0.78621 0.81353 0.82205 1.20609 1.22094 1.19130 1.20133 0.97748 0.92895 0.86801 1.21556 0.80340 1.04312 0.99257 1.21232 1.00933 0.96734 0.96026 1.21714 0.93387 1.04521 1.04256 1.23590 0.99533 0.96215 0.94180 1.83895 1.28640 1.51023 1.43906 0.91648 0.91930 0.92353 0.90480 0.90067 0.90109 0.88690 0.90145 0.92603 0.90908 0.89188 0.92806 0.93137 0.99711 0.93323 0.92856 0.91211 0.84040 0.84903 0.79558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 10.24 37.15 0.38 -0.93 16 2 C 0.11 0.75 5.93 -4.05 -0.02 0.73 16 3 N -0.62 -6.73 2.36 -173.68 -0.41 -7.14 16 4 C 0.13 1.29 4.95 -4.04 -0.02 1.27 16 5 C -0.01 -0.10 2.97 -93.41 -0.28 -0.38 16 6 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 7 C -0.14 -1.59 7.90 37.16 0.29 -1.30 16 8 C 0.22 2.49 14.65 -20.76 -0.30 2.18 16 9 N -0.44 -6.22 18.54 42.15 0.78 -5.44 16 10 C 0.51 7.95 5.84 -10.99 -0.06 7.88 16 11 O -0.48 -9.90 12.24 5.55 0.07 -9.83 16 12 C 0.04 0.60 4.00 -4.98 -0.02 0.58 16 13 N -0.52 -10.35 4.30 -238.96 -1.03 -11.37 16 14 C 0.19 4.68 4.29 -4.98 -0.02 4.65 16 15 C -0.48 -13.07 5.63 -34.44 -0.19 -13.26 16 16 H 0.07 2.06 4.60 -52.49 -0.24 1.82 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.88 22.13 29.01 -169.99 -4.93 17.20 16 20 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 22 H -0.27 -6.24 6.04 56.52 0.34 -5.90 16 23 C 0.15 2.67 5.49 -4.98 -0.03 2.64 16 24 C 0.00 -0.09 4.77 -35.62 -0.17 -0.26 16 25 C -0.13 -2.71 7.20 -39.70 -0.29 -3.00 16 26 C -0.22 -4.26 9.63 -39.71 -0.38 -4.64 16 27 C -0.07 -1.20 12.02 29.41 0.35 -0.84 16 28 O -0.18 -3.51 10.65 5.68 0.06 -3.44 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.60 7.22 -51.93 -0.38 0.22 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.08 0.49 6.44 -51.93 -0.33 0.16 16 34 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.09 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.08 1.04 6.06 -51.93 -0.31 0.72 16 37 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 39 H 0.09 1.02 7.19 -51.93 -0.37 0.64 16 40 H 0.05 0.74 7.17 -51.93 -0.37 0.37 16 41 H 0.05 1.41 5.79 -51.93 -0.30 1.11 16 42 H -0.01 -0.39 7.99 -51.93 -0.41 -0.80 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.05 0.88 8.01 -51.93 -0.42 0.47 16 45 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 46 H 0.14 3.15 7.77 -52.49 -0.41 2.74 16 47 H 0.13 2.42 7.58 -52.48 -0.40 2.03 16 48 H 0.19 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -35.00 385.87 -7.08 -42.08 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.31 Total: 1.48 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.86 Total: -3.20 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.08 Total: -50.11 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.13 Total: -13.27 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.93 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.00 -7.08 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081518138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.898 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds