Wall clock time and date at job start Tue Mar 31 2020 18:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47399 * 2 1 4 4 C 1.46498 * 120.00348 * 270.00437 * 3 2 1 5 5 C 1.50704 * 109.46867 * 269.99821 * 4 3 2 6 6 H 1.07993 * 120.00136 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99658 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99546 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47133 * 60.00555 * 9 7 5 11 11 H 1.48505 * 109.46740 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47180 * 300.00171 * 9 7 5 13 13 C 1.34780 * 120.00024 * 89.99527 * 3 2 1 14 14 O 1.21281 * 119.99970 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99937 * 0.02562 * 13 3 2 16 16 C 1.52999 * 109.47404 * 179.97438 * 15 13 3 17 17 H 1.09004 * 109.46475 * 54.99608 * 16 15 13 18 18 N 1.46501 * 109.47166 * 295.00047 * 16 15 13 19 19 C 1.34775 * 120.00117 * 153.85727 * 18 16 15 20 20 N 1.34772 * 119.99874 * 184.99305 * 19 18 16 21 21 O 1.21587 * 119.99962 * 4.99522 * 19 18 16 22 22 C 1.50692 * 109.47443 * 174.99904 * 16 15 13 23 23 C 1.38260 * 120.00213 * 254.13826 * 22 16 15 24 24 C 1.38213 * 120.00195 * 179.97438 * 23 22 16 25 25 C 1.38252 * 120.00202 * 0.04499 * 24 23 22 26 26 C 1.38220 * 119.99927 * 359.95544 * 25 24 23 27 27 C 1.50691 * 119.99984 * 179.97438 * 26 25 24 28 28 C 1.38215 * 120.00124 * 74.16047 * 22 16 15 29 29 H 1.08997 * 109.47176 * 299.99713 * 1 2 3 30 30 H 1.08996 * 109.47469 * 60.00088 * 1 2 3 31 31 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47461 * 239.99824 * 2 1 3 33 33 H 1.09003 * 109.47347 * 120.00586 * 2 1 3 34 34 H 1.09008 * 109.47023 * 29.99111 * 4 3 2 35 35 H 1.08997 * 109.47720 * 149.99775 * 4 3 2 36 36 H 0.96999 * 119.99787 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47572 * 59.99642 * 15 13 3 38 38 H 1.08998 * 109.47135 * 299.99667 * 15 13 3 39 39 H 0.97006 * 119.99765 * 333.86302 * 18 16 15 40 40 H 0.97006 * 120.00390 * 0.02562 * 20 19 18 41 41 H 0.97007 * 120.00600 * 180.02562 * 20 19 18 42 42 H 1.07999 * 119.99369 * 359.72243 * 23 22 16 43 43 H 1.08000 * 120.00041 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00343 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.47654 * 270.02243 * 27 26 25 46 46 H 1.09003 * 109.47641 * 30.02495 * 27 26 25 47 47 H 1.09007 * 109.47406 * 150.02242 * 27 26 25 48 48 H 1.08000 * 119.99725 * 359.97438 * 28 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1491 2.3897 -2.8780 8 7 3.3490 3.1259 -3.6180 9 14 5.9135 2.0967 -3.4169 10 1 6.1417 0.6401 -3.5938 11 1 6.1610 2.7968 -4.7030 12 1 6.8406 2.6209 -2.3821 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2432 3.6353 17 1 1.7584 3.1688 3.5286 18 7 3.7579 2.5433 3.6267 19 6 4.2090 3.6927 4.1669 20 7 5.5138 4.0162 4.0702 21 8 3.4389 4.4378 4.7415 22 6 1.9579 1.5778 4.9368 23 6 0.8370 1.9907 5.6330 24 6 0.5009 1.3801 6.8265 25 6 1.2860 0.3570 7.3248 26 6 2.4066 -0.0558 6.6288 27 6 3.2627 -1.1706 7.1722 28 6 2.7428 0.5550 5.4349 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6751 3.5164 -4.4439 37 1 2.6226 0.4187 2.5300 38 1 0.9443 1.0115 2.5302 39 1 4.3827 1.9148 3.2321 40 1 6.1282 3.4219 3.6114 41 1 5.8387 4.8433 4.4593 42 1 0.2264 2.7932 5.2462 43 1 -0.3749 1.7024 7.3701 44 1 1.0236 -0.1198 8.2576 45 1 4.0387 -0.7532 7.8138 46 1 2.6429 -1.8560 7.7504 47 1 3.7258 -1.7092 6.3453 48 1 3.6184 0.2324 4.8911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084409504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:23 Heat of formation + Delta-G solvation = -53.031142 kcal Electronic energy + Delta-G solvation = -29390.313359 eV Core-core repulsion = 25444.704596 eV Total energy + Delta-G solvation = -3945.608764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32547 -38.98436 -38.86797 -35.67618 -34.99357 -33.49750 -32.84025 -32.68159 -30.99042 -30.17330 -29.73400 -27.19074 -26.88572 -24.54543 -23.02784 -22.54884 -21.95178 -21.09551 -20.20471 -18.47419 -17.98990 -17.11512 -16.78181 -16.43401 -16.19604 -15.63363 -15.38381 -15.09280 -14.72557 -14.48369 -14.36649 -14.04948 -13.87574 -13.60249 -13.44468 -13.33949 -13.10353 -12.83179 -12.55250 -12.45203 -12.18178 -12.03201 -11.86084 -11.52368 -11.42405 -11.19025 -11.15641 -10.98475 -10.93920 -10.71285 -10.52230 -10.15341 -10.01976 -9.67577 -9.45063 -9.10096 -8.77929 -8.74052 -8.59623 -8.45697 -7.66528 -6.06380 -4.11404 1.29947 1.36837 3.10705 3.27874 3.32991 3.33848 3.43699 3.55065 3.70075 3.93769 4.41070 4.67132 4.69916 4.75090 4.82940 4.96475 5.06795 5.19398 5.23523 5.24781 5.28555 5.38001 5.41683 5.52824 5.57067 5.59422 5.65393 5.66789 5.80323 5.91552 6.00828 6.04111 6.11275 6.22159 6.44308 6.47772 6.50901 6.54393 6.74398 6.93784 6.98060 7.06233 7.13664 7.44135 7.53803 7.89738 8.19369 8.21613 8.42184 8.87852 8.90905 9.09371 9.53562 11.01630 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.003444 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.997562 B = 8127.563675 C = 9028.127997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.502 3.498 14 O -0.529 6.529 15 C -0.147 4.147 16 C 0.223 3.777 17 H 0.103 0.897 18 N -0.723 5.723 19 C 0.717 3.283 20 N -0.869 5.869 21 O -0.597 6.597 22 C -0.083 4.083 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.092 4.092 27 C -0.112 4.112 28 C -0.104 4.104 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.394 0.606 40 H 0.395 0.605 41 H 0.411 0.589 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -10.215 18.828 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.288 3.712 14 O -0.406 6.406 15 C -0.188 4.188 16 C 0.117 3.883 17 H 0.121 0.879 18 N -0.377 5.377 19 C 0.415 3.585 20 N -0.436 5.436 21 O -0.475 6.475 22 C -0.085 4.085 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.092 4.092 27 C -0.169 4.169 28 C -0.122 4.122 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.227 0.773 40 H 0.223 0.777 41 H 0.242 0.758 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.662 -8.953 19.040 21.207 hybrid contribution 1.704 -0.468 -0.767 1.927 sum -0.957 -9.421 18.273 20.581 Atomic orbital electron populations 1.22223 0.96828 1.01401 1.02354 1.21405 0.93522 0.84308 1.02552 1.48258 1.63812 1.13182 1.07731 1.19236 0.96131 0.93616 0.78183 1.21371 0.96932 1.31935 1.06209 0.92639 1.24940 0.97761 0.94969 0.96444 1.69920 1.35704 1.33306 1.14352 0.86574 0.84862 0.78174 0.77855 1.20298 1.21204 1.20285 1.20172 0.79041 0.87096 0.84929 1.90726 1.45153 1.17683 1.86994 1.22100 1.04266 0.99381 0.93074 1.19325 0.81535 0.98176 0.89310 0.87877 1.44810 1.07911 1.21132 1.63800 1.15791 0.82398 0.81488 0.78806 1.42924 1.08433 1.27873 1.64408 1.90921 1.55510 1.52203 1.48892 1.20267 0.95327 0.95915 0.96971 1.21035 0.96907 0.99406 0.94967 1.21084 0.99738 0.96547 0.96167 1.20978 0.95417 0.98090 0.99762 1.19861 0.96248 0.97863 0.95235 1.20766 0.98933 0.96081 1.01124 1.20771 0.99399 0.96174 0.95868 0.93010 0.92066 0.92215 0.90071 0.91795 0.95177 0.93975 0.92662 0.88987 0.87916 0.77291 0.77719 0.75776 0.85910 0.86169 0.86482 0.91441 0.91734 0.91601 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.60 5.93 -4.05 -0.02 1.57 16 3 N -0.60 -11.89 2.46 -175.06 -0.43 -12.32 16 4 C 0.25 6.29 5.16 -5.19 -0.03 6.27 16 5 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.50 9.69 7.53 -10.99 -0.08 9.60 16 14 O -0.53 -12.67 14.93 5.56 0.08 -12.58 16 15 C -0.15 -2.01 3.72 -27.88 -0.10 -2.11 16 16 C 0.22 3.24 1.70 -69.09 -0.12 3.12 16 17 H 0.10 1.83 7.23 -51.93 -0.38 1.45 16 18 N -0.72 -10.46 3.68 -59.82 -0.22 -10.68 16 19 C 0.72 11.75 8.80 -86.92 -0.76 10.98 16 20 N -0.87 -10.60 8.88 27.63 0.25 -10.36 16 21 O -0.60 -12.16 16.88 5.29 0.09 -12.07 16 22 C -0.08 -1.07 4.92 -104.63 -0.51 -1.58 16 23 C -0.10 -1.30 9.67 -39.58 -0.38 -1.68 16 24 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 25 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 26 C -0.09 -0.95 5.88 -104.62 -0.62 -1.57 16 27 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 28 C -0.10 -1.18 8.93 -39.58 -0.35 -1.53 16 29 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16 35 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.09 1.05 7.40 -51.93 -0.38 0.67 16 38 H 0.10 1.22 7.19 -51.93 -0.37 0.84 16 39 H 0.39 4.90 8.63 -40.82 -0.35 4.54 16 40 H 0.40 3.79 8.85 -40.82 -0.36 3.43 16 41 H 0.41 4.46 8.93 -40.82 -0.36 4.09 16 42 H 0.12 1.47 7.99 -52.49 -0.42 1.05 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 47 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 48 H 0.12 1.17 7.90 -52.49 -0.41 0.76 16 LS Contribution 402.24 15.07 6.06 6.06 Total: -1.00 -36.42 402.24 -9.38 -45.80 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.48 Total: 11.07 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.45 Total: 4.32 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.33 Total: -58.94 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.17 Total: -24.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.42 -9.38 -45.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084409504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.234 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds