Wall clock time and date at job start Tue Mar 31 2020 18:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46937 * 2 1 4 4 C 1.46499 * 120.00287 * 270.00074 * 3 2 1 5 5 C 1.50700 * 109.47222 * 270.00381 * 4 3 2 6 6 H 1.08000 * 119.99916 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99938 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00036 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00065 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47086 * 90.00145 * 9 7 5 11 11 H 1.48501 * 109.47264 * 209.99990 * 9 7 5 12 12 H 1.48498 * 109.47108 * 330.00071 * 9 7 5 13 13 C 1.34771 * 119.99941 * 90.00549 * 3 2 1 14 14 O 1.21288 * 120.00223 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00251 * 359.97438 * 13 3 2 16 16 N 1.46501 * 109.47164 * 180.02562 * 15 13 3 17 17 C 1.39672 * 119.99632 * 180.02562 * 16 15 13 18 18 C 1.38992 * 120.04161 * 359.97438 * 17 16 15 19 19 C 1.38128 * 120.06636 * 180.02562 * 18 17 16 20 20 C 1.38179 * 120.14577 * 0.02562 * 19 18 17 21 21 C 1.38908 * 120.07757 * 359.97438 * 20 19 18 22 22 N 1.39926 * 120.03476 * 180.02562 * 21 20 19 23 23 C 1.34769 * 119.99934 * 335.14530 * 22 21 20 24 24 C 1.50697 * 120.00249 * 174.47699 * 23 22 21 25 25 O 1.21290 * 120.00198 * 354.48265 * 23 22 21 26 26 C 1.38760 * 119.93774 * 0.27569 * 21 20 19 27 27 C 1.50693 * 120.07774 * 179.70203 * 26 21 20 28 28 H 1.09006 * 109.46684 * 300.00030 * 1 2 3 29 29 H 1.08996 * 109.47255 * 59.99595 * 1 2 3 30 30 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46925 * 240.00819 * 2 1 3 32 32 H 1.08996 * 109.47255 * 120.00405 * 2 1 3 33 33 H 1.09005 * 109.46794 * 30.00370 * 4 3 2 34 34 H 1.08997 * 109.47053 * 149.99705 * 4 3 2 35 35 H 0.97000 * 120.00165 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46677 * 59.99873 * 15 13 3 37 37 H 1.08997 * 109.46654 * 300.00278 * 15 13 3 38 38 H 0.96994 * 120.00361 * 359.97438 * 16 15 13 39 39 H 1.08004 * 119.96364 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.92450 * 179.97438 * 19 18 17 41 41 H 1.07994 * 119.96511 * 180.02562 * 20 19 18 42 42 H 0.97004 * 119.99846 * 155.14049 * 22 21 20 43 43 H 1.09003 * 109.47431 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.46914 * 60.00468 * 24 23 22 45 45 H 1.09000 * 109.47233 * 300.00208 * 24 23 22 46 46 H 1.09004 * 109.46986 * 90.00365 * 27 26 21 47 47 H 1.08996 * 109.47407 * 210.00043 * 27 26 21 48 48 H 1.08996 * 109.47081 * 330.00180 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 5.3909 2.1827 -3.2580 9 14 3.0122 3.4342 -3.9298 10 1 3.1146 4.8547 -3.5091 11 1 3.4056 3.3110 -5.3565 12 1 1.6128 2.9673 -3.7601 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3084 2.2040 3.5858 17 6 2.1533 1.7650 4.9027 18 6 1.6978 0.4768 5.1576 19 6 1.5437 0.0423 6.4596 20 6 1.8411 0.8862 7.5126 21 6 2.2967 2.1748 7.2648 22 7 2.5981 3.0284 8.3317 23 6 2.0113 2.8417 9.5305 24 6 2.4268 3.6803 10.7116 25 8 1.1488 1.9987 9.6589 26 6 2.4478 2.6165 5.9580 27 6 2.9354 4.0161 5.6856 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 5.7167 2.5727 -4.0842 36 1 2.6213 0.4186 2.5301 37 1 0.9434 1.0125 2.5299 38 1 2.6266 3.1029 3.4086 39 1 1.4641 -0.1851 4.3367 40 1 1.1892 -0.9590 6.6551 41 1 1.7199 0.5433 8.5295 42 1 3.2294 3.7545 8.2085 43 1 1.8471 3.3877 11.5871 44 1 2.2467 4.7326 10.4914 45 1 3.4874 3.5271 10.9109 46 1 4.0233 4.0150 5.6175 47 1 2.5131 4.3715 4.7457 48 1 2.6227 4.6741 6.4963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088523740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:44 Heat of formation + Delta-G solvation = -62.425119 kcal Electronic energy + Delta-G solvation = -28289.077167 eV Core-core repulsion = 24343.061050 eV Total energy + Delta-G solvation = -3946.016117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.68098 -40.99130 -39.77494 -37.24408 -36.64925 -35.34496 -34.85638 -33.25918 -31.97271 -31.36466 -30.13630 -29.11905 -27.98526 -27.18054 -24.52283 -24.17851 -23.11199 -22.39173 -21.17633 -20.10346 -19.14024 -18.87678 -18.52309 -17.65462 -17.57182 -16.80752 -16.69100 -16.59109 -16.16301 -15.88026 -15.84133 -15.12978 -14.84157 -14.81493 -14.72240 -14.49526 -14.34839 -14.17709 -14.02415 -13.73170 -13.44270 -13.38823 -13.33570 -13.19309 -13.14836 -12.88983 -12.56387 -12.46707 -12.39638 -12.13987 -12.05188 -11.93707 -11.75761 -11.65812 -10.93600 -10.84904 -10.81299 -10.60070 -9.49771 -9.03098 -8.35225 -8.30527 -6.40423 0.36821 0.69309 1.31831 1.35386 1.43759 1.63391 1.65091 1.92343 2.19033 2.29398 2.64920 2.96973 2.99021 3.49536 3.79847 3.97615 4.05705 4.08867 4.21455 4.28131 4.34299 4.42169 4.46792 4.60475 4.60602 4.62743 4.65506 4.67634 4.74722 4.78753 4.79052 4.87464 4.99136 5.01706 5.10508 5.20265 5.31836 5.39047 5.41354 5.45041 5.46659 5.58347 5.71684 5.97391 6.20446 6.33334 6.48083 6.59680 6.61503 6.74231 7.13415 7.16448 7.29755 8.81495 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002311 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.488682 B =12112.677602 C =12907.531127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.593 5.593 4 C 0.225 3.775 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.010 3.990 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.238 1.238 13 C 0.494 3.506 14 O -0.588 6.588 15 C 0.119 3.881 16 N -0.738 5.738 17 C 0.227 3.773 18 C -0.219 4.219 19 C -0.059 4.059 20 C -0.206 4.206 21 C 0.182 3.818 22 N -0.661 5.661 23 C 0.502 3.498 24 C -0.164 4.164 25 O -0.569 6.569 26 C -0.204 4.204 27 C -0.104 4.104 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.019 0.981 35 H 0.268 0.732 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.404 0.596 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.425 0.575 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 -1.312 23.855 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.103 3.897 5 C -0.573 4.573 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.161 1.161 13 C 0.283 3.717 14 O -0.469 6.469 15 C -0.008 4.008 16 N -0.371 5.371 17 C 0.122 3.878 18 C -0.242 4.242 19 C -0.078 4.078 20 C -0.228 4.228 21 C 0.086 3.914 22 N -0.306 5.306 23 C 0.293 3.707 24 C -0.223 4.223 25 O -0.448 6.448 26 C -0.211 4.211 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.242 0.758 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.264 0.736 43 H 0.113 0.887 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.909 -1.394 23.707 25.733 hybrid contribution 0.686 1.114 -1.197 1.773 sum -9.223 -0.280 22.510 24.328 Atomic orbital electron populations 1.22173 0.93831 1.03842 1.02142 1.21867 0.95711 0.80802 1.04411 1.47991 1.63513 1.15300 1.05583 1.19329 0.94907 0.93070 0.82401 1.21532 0.96994 1.32109 1.06690 0.95213 1.25850 0.96704 0.97231 0.98999 1.70048 1.17404 1.46520 1.24444 0.85725 0.80483 0.78987 0.77806 1.20251 1.20102 1.16105 1.21079 0.77302 0.86676 0.86680 1.90626 1.48089 1.20504 1.87687 1.21149 1.03658 0.93237 0.82771 1.44548 1.73946 1.17117 1.01499 1.17529 0.93720 0.93139 0.83375 1.20851 1.10004 0.95181 0.98176 1.20988 0.95942 0.99663 0.91203 1.21152 1.08015 0.93124 1.00502 1.17390 0.97704 0.89949 0.86331 1.43655 1.45176 1.32480 1.09318 1.21906 0.80007 0.83914 0.84876 1.21972 1.05429 1.00990 0.93892 1.90693 1.32459 1.36782 1.84892 1.19118 1.13379 0.98087 0.90544 1.20536 1.01321 0.91852 1.02382 0.91992 0.93439 0.88571 0.90571 0.88246 0.93151 0.96292 0.92283 0.87853 0.86748 0.75802 0.84332 0.83900 0.85358 0.73599 0.88673 0.86714 0.86656 0.90877 0.92695 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.54 16 2 C 0.09 2.53 5.93 86.38 0.51 3.04 16 3 N -0.59 -22.71 2.46 -826.15 -2.03 -24.74 16 4 C 0.23 10.64 4.23 85.63 0.36 11.00 16 5 C -0.53 -30.86 9.94 25.60 0.25 -30.61 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.60 5.47 84.65 0.46 1.06 16 8 N -0.94 -59.15 13.96 21.45 0.30 -58.86 16 9 Si 0.95 43.87 27.47 68.60 1.88 45.76 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 13 C 0.49 18.90 7.74 87.66 0.68 19.58 16 14 O -0.59 -27.94 15.25 -3.05 -0.05 -27.99 16 15 C 0.12 3.20 3.94 85.63 0.34 3.54 16 16 N -0.74 -20.89 5.60 -343.18 -1.92 -22.81 16 17 C 0.23 5.87 6.63 38.20 0.25 6.12 16 18 C -0.22 -5.02 9.31 22.42 0.21 -4.81 16 19 C -0.06 -1.32 10.03 22.23 0.22 -1.09 16 20 C -0.21 -5.17 8.72 22.42 0.20 -4.97 16 21 C 0.18 4.23 6.41 38.13 0.24 4.48 16 22 N -0.66 -10.80 4.97 -303.57 -1.51 -12.31 16 23 C 0.50 8.65 7.74 87.66 0.68 9.32 16 24 C -0.16 -1.04 10.32 71.23 0.74 -0.30 16 25 O -0.57 -15.20 14.25 -3.06 -0.04 -15.24 16 26 C -0.20 -4.89 5.91 -19.61 -0.12 -5.00 16 27 C -0.10 -2.05 9.00 71.23 0.64 -1.41 16 28 H 0.06 1.16 7.22 -2.38 -0.02 1.14 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.23 8.07 -2.39 -0.02 2.22 16 32 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 33 H 0.05 2.19 7.13 -2.38 -0.02 2.17 16 34 H 0.02 0.97 6.85 -2.39 -0.02 0.95 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.10 2.44 7.21 -2.39 -0.02 2.43 16 37 H 0.11 2.40 6.99 -2.39 -0.02 2.39 16 38 H 0.40 12.74 5.44 -92.71 -0.50 12.24 16 39 H 0.14 2.58 6.72 -2.91 -0.02 2.56 16 40 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.13 3.47 5.78 -2.91 -0.02 3.45 16 42 H 0.42 4.09 7.42 -92.71 -0.69 3.41 16 43 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 44 H 0.11 0.21 8.14 -2.38 -0.02 0.20 16 45 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.25 6.56 -2.39 -0.02 1.23 16 48 H 0.08 1.20 6.99 -2.39 -0.02 1.18 16 Total: -1.00 -83.16 388.33 2.79 -80.37 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.25 Total: 28.43 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.41 Total: 7.39 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -5.16 Total: -118.72 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.09 Total: -43.23 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -83.16 2.79 -80.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088523740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.943 kcal (2) G-P(sol) polarization free energy of solvation -83.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds