Wall clock time and date at job start Tue Mar 31 2020 18:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47503 * 2 1 4 4 C 1.46499 * 120.00229 * 270.00588 * 3 2 1 5 5 C 1.50696 * 109.46870 * 269.99535 * 4 3 2 6 6 H 1.08005 * 120.00400 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99876 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47254 * 60.00493 * 9 7 5 11 11 H 1.48503 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47744 * 300.00479 * 9 7 5 13 13 C 1.34773 * 119.99663 * 90.00186 * 3 2 1 14 14 O 1.21279 * 120.00297 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00051 * 0.02562 * 13 3 2 16 16 N 1.46502 * 109.47082 * 179.97438 * 15 13 3 17 17 C 1.39717 * 120.00219 * 180.02562 * 16 15 13 18 18 C 1.39021 * 119.99779 * 359.97438 * 17 16 15 19 19 C 1.38213 * 120.21495 * 180.02562 * 18 17 16 20 20 C 1.38017 * 120.22649 * 0.04168 * 19 18 17 21 21 C 1.39575 * 120.00632 * 359.96086 * 20 19 18 22 22 C 1.47864 * 120.10803 * 180.29100 * 21 20 19 23 23 O 1.21555 * 120.00024 * 173.77384 * 22 21 20 24 24 N 1.34781 * 119.99901 * 353.77768 * 22 21 20 25 25 C 1.46507 * 119.99833 * 179.97438 * 24 22 21 26 26 C 1.38636 * 120.00520 * 180.02562 * 17 16 15 27 27 C 1.50700 * 120.11169 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.46740 * 59.99400 * 1 2 3 29 29 H 1.08994 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46554 * 299.99885 * 1 2 3 31 31 H 1.09009 * 109.47065 * 240.00329 * 2 1 3 32 32 H 1.08994 * 109.47460 * 120.00770 * 2 1 3 33 33 H 1.08997 * 109.46905 * 29.99726 * 4 3 2 34 34 H 1.08997 * 109.47086 * 149.99627 * 4 3 2 35 35 H 0.96997 * 120.00229 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47087 * 60.00226 * 15 13 3 37 37 H 1.09000 * 109.47138 * 299.99676 * 15 13 3 38 38 H 0.97001 * 120.00419 * 0.02562 * 16 15 13 39 39 H 1.07996 * 119.89523 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.88312 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.99315 * 179.97438 * 20 19 18 42 42 H 0.96997 * 120.00319 * 359.97438 * 24 22 21 43 43 H 1.09002 * 109.46956 * 180.02562 * 25 24 22 44 44 H 1.08998 * 109.46708 * 300.00173 * 25 24 22 45 45 H 1.08998 * 109.46848 * 59.99992 * 25 24 22 46 46 H 1.08997 * 109.46836 * 263.53077 * 27 26 17 47 47 H 1.08993 * 109.47207 * 23.53572 * 27 26 17 48 48 H 1.09002 * 109.46458 * 143.53531 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0968 -3.4169 10 1 6.1417 0.6402 -3.5938 11 1 6.1609 2.7968 -4.7030 12 1 6.8407 2.6210 -2.3822 13 6 2.2431 2.0164 1.1672 14 8 2.6470 3.1600 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2031 3.5858 17 6 2.1562 1.7636 4.9031 18 6 1.7006 0.4750 5.1571 19 6 1.5459 0.0357 6.4584 20 6 1.8419 0.8737 7.5144 21 6 2.2999 2.1694 7.2701 22 6 2.6238 3.0669 8.3997 23 8 3.1285 4.1523 8.1882 24 7 2.3593 2.6815 9.6639 25 6 2.6808 3.5705 10.7831 26 6 2.4565 2.6129 5.9569 27 6 2.9500 4.0105 5.6846 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 1.5817 1.6878 -2.0283 34 1 2.0956 3.1411 -1.1383 35 1 3.6749 3.5158 -4.4443 36 1 2.6230 0.4185 2.5298 37 1 0.9446 1.0113 2.5302 38 1 2.6279 3.1024 3.4087 39 1 1.4668 -0.1851 4.3349 40 1 1.1920 -0.9666 6.6496 41 1 1.7193 0.5268 8.5298 42 1 1.9563 1.8155 9.8327 43 1 2.3979 3.0914 11.7205 44 1 3.7513 3.7752 10.7886 45 1 2.1325 4.5061 10.6729 46 1 4.0387 4.0271 5.7325 47 1 2.6250 4.3237 4.6925 48 1 2.5429 4.6915 6.4321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088524275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:42 Heat of formation + Delta-G solvation = -38.148235 kcal Electronic energy + Delta-G solvation = -28286.254686 eV Core-core repulsion = 24341.291294 eV Total energy + Delta-G solvation = -3944.963393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58099 -39.48144 -38.58573 -35.70317 -35.19328 -34.85188 -32.88718 -32.54904 -30.55233 -30.17037 -28.21665 -27.26974 -26.44083 -25.98894 -23.36251 -23.10375 -22.28608 -21.38781 -20.44814 -18.69439 -18.25452 -17.03241 -16.57695 -16.40482 -15.95000 -15.71958 -15.55828 -15.40032 -15.18431 -14.97076 -14.33869 -14.07022 -13.85766 -13.57539 -13.47995 -13.32978 -13.28888 -12.92947 -12.70539 -12.63975 -12.27170 -12.16376 -12.08283 -11.92330 -11.80570 -11.65470 -11.25868 -11.16702 -10.98115 -10.83295 -10.58805 -10.20571 -10.16659 -9.76642 -9.72190 -9.43489 -9.13306 -8.85235 -8.47741 -7.81077 -7.40354 -6.09038 -4.14207 0.81128 1.44501 2.79008 2.91590 3.19667 3.29288 3.30921 3.34149 3.38404 3.80623 3.92015 4.40833 4.51404 4.73865 4.82054 4.84579 4.91694 5.03295 5.16623 5.18815 5.25604 5.31723 5.32323 5.41188 5.43884 5.52571 5.55356 5.67079 5.70043 5.73865 5.89962 5.94359 6.05663 6.14804 6.15892 6.29795 6.34307 6.40156 6.45776 6.66919 6.93464 7.21628 7.26847 7.35775 7.43323 7.78429 7.86355 8.01811 8.16691 8.27056 8.78063 8.93795 9.50949 10.99050 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.002386 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.109127 B =11732.291631 C =12684.209468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.500 3.500 14 O -0.537 6.537 15 C 0.102 3.898 16 N -0.728 5.728 17 C 0.218 3.782 18 C -0.176 4.176 19 C -0.083 4.083 20 C -0.151 4.151 21 C -0.098 4.098 22 C 0.557 3.443 23 O -0.528 6.528 24 N -0.735 5.735 25 C 0.088 3.912 26 C -0.095 4.095 27 C -0.114 4.114 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.414 0.586 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.401 0.599 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -8.959 24.383 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.285 3.715 14 O -0.415 6.415 15 C -0.026 4.026 16 N -0.361 5.361 17 C 0.112 3.888 18 C -0.199 4.199 19 C -0.102 4.102 20 C -0.172 4.172 21 C -0.102 4.102 22 C 0.346 3.654 23 O -0.405 6.405 24 N -0.387 5.387 25 C -0.056 4.056 26 C -0.100 4.100 27 C -0.170 4.170 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.255 0.745 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.236 0.764 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.698 -7.544 23.848 25.894 hybrid contribution 0.837 -0.512 -0.426 1.070 sum -5.861 -8.055 23.422 25.453 Atomic orbital electron populations 1.22229 0.96546 1.01623 1.02449 1.21484 0.93681 0.83962 1.02967 1.48228 1.63151 1.13346 1.07537 1.19312 0.96430 0.93660 0.77821 1.21365 0.96829 1.32190 1.06375 0.92507 1.24936 0.97918 0.94853 0.96366 1.69915 1.35775 1.33230 1.14331 0.86547 0.84690 0.78263 0.77859 1.20222 1.21140 1.20168 1.20148 0.79020 0.87103 0.85196 1.90673 1.46041 1.18021 1.86741 1.21219 1.01521 0.93721 0.86109 1.44663 1.72816 1.17658 1.00929 1.17556 0.94200 0.92625 0.84369 1.20829 1.06515 0.94940 0.97653 1.20731 0.98498 0.99196 0.91757 1.20860 1.04197 0.93374 0.98809 1.19356 1.04030 0.94561 0.92253 1.18406 0.77989 0.86198 0.82800 1.90743 1.42888 1.22571 1.84326 1.45731 1.65153 1.21695 1.06158 1.21532 1.01466 0.94628 0.87934 1.19455 1.02976 0.97061 0.90515 1.20901 1.01619 0.92579 1.01929 0.91900 0.91947 0.93039 0.89590 0.91652 0.94777 0.93816 0.92592 0.89696 0.89742 0.74492 0.85637 0.85696 0.86409 0.76392 0.90705 0.92151 0.92150 0.91015 0.92615 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.81 2.46 -175.06 -0.43 -12.24 16 4 C 0.25 6.26 5.16 -5.20 -0.03 6.23 16 5 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.50 9.88 7.74 -10.99 -0.09 9.79 16 14 O -0.54 -12.98 15.25 5.56 0.08 -12.90 16 15 C 0.10 1.46 3.94 -5.19 -0.02 1.44 16 16 N -0.73 -10.83 5.61 -59.84 -0.34 -11.17 16 17 C 0.22 2.90 6.63 -83.83 -0.56 2.35 16 18 C -0.18 -1.92 9.31 -39.30 -0.37 -2.28 16 19 C -0.08 -0.75 10.02 -39.67 -0.40 -1.15 16 20 C -0.15 -1.37 9.52 -39.16 -0.37 -1.75 16 21 C -0.10 -1.16 5.87 -104.99 -0.62 -1.78 16 22 C 0.56 6.64 7.70 -12.32 -0.09 6.54 16 23 O -0.53 -7.96 13.34 5.32 0.07 -7.88 16 24 N -0.73 -5.83 5.66 -68.03 -0.39 -6.22 16 25 C 0.09 0.57 10.70 59.85 0.64 1.21 16 26 C -0.09 -1.29 5.93 -104.01 -0.62 -1.91 16 27 C -0.11 -1.62 8.43 36.01 0.30 -1.32 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 31 H 0.09 1.33 8.07 -51.92 -0.42 0.91 16 32 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 1.07 7.20 -51.93 -0.37 0.70 16 37 H 0.08 1.01 6.99 -51.93 -0.36 0.65 16 38 H 0.41 6.88 5.29 -40.82 -0.22 6.67 16 39 H 0.13 1.17 6.71 -52.49 -0.35 0.81 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.68 6.44 -52.48 -0.34 0.34 16 42 H 0.40 2.04 6.90 -40.82 -0.28 1.75 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 0.79 6.23 -51.93 -0.32 0.47 16 48 H 0.09 1.37 5.86 -51.93 -0.30 1.06 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -34.75 390.32 -8.66 -43.41 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.99 Total: 6.16 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.27 Total: 3.80 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.41 Total: -55.18 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.16 Total: -20.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.75 -8.66 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.258 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds