Wall clock time and date at job start Tue Mar 31 2020 18:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47503 * 2 1 4 4 C 1.46499 * 120.00229 * 270.00588 * 3 2 1 5 5 C 1.50696 * 109.46870 * 269.99535 * 4 3 2 6 6 H 1.08005 * 120.00400 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99876 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47254 * 60.00493 * 9 7 5 11 11 H 1.48503 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47744 * 300.00479 * 9 7 5 13 13 C 1.34773 * 119.99663 * 90.00186 * 3 2 1 14 14 O 1.21279 * 120.00297 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00051 * 0.02562 * 13 3 2 16 16 N 1.46502 * 109.47082 * 179.97438 * 15 13 3 17 17 C 1.39717 * 120.00219 * 180.02562 * 16 15 13 18 18 C 1.39021 * 119.99779 * 359.97438 * 17 16 15 19 19 C 1.38213 * 120.21495 * 180.02562 * 18 17 16 20 20 C 1.38017 * 120.22649 * 0.04168 * 19 18 17 21 21 C 1.39575 * 120.00632 * 359.96086 * 20 19 18 22 22 C 1.47864 * 120.10803 * 180.29100 * 21 20 19 23 23 O 1.21555 * 120.00024 * 173.77384 * 22 21 20 24 24 N 1.34781 * 119.99901 * 353.77768 * 22 21 20 25 25 C 1.46507 * 119.99833 * 179.97438 * 24 22 21 26 26 C 1.38636 * 120.00520 * 180.02562 * 17 16 15 27 27 C 1.50700 * 120.11169 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.46740 * 59.99400 * 1 2 3 29 29 H 1.08994 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46554 * 299.99885 * 1 2 3 31 31 H 1.09009 * 109.47065 * 240.00329 * 2 1 3 32 32 H 1.08994 * 109.47460 * 120.00770 * 2 1 3 33 33 H 1.08997 * 109.46905 * 29.99726 * 4 3 2 34 34 H 1.08997 * 109.47086 * 149.99627 * 4 3 2 35 35 H 0.96997 * 120.00229 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47087 * 60.00226 * 15 13 3 37 37 H 1.09000 * 109.47138 * 299.99676 * 15 13 3 38 38 H 0.97001 * 120.00419 * 0.02562 * 16 15 13 39 39 H 1.07996 * 119.89523 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.88312 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.99315 * 179.97438 * 20 19 18 42 42 H 0.96997 * 120.00319 * 359.97438 * 24 22 21 43 43 H 1.09002 * 109.46956 * 180.02562 * 25 24 22 44 44 H 1.08998 * 109.46708 * 300.00173 * 25 24 22 45 45 H 1.08998 * 109.46848 * 59.99992 * 25 24 22 46 46 H 1.08997 * 109.46836 * 263.53077 * 27 26 17 47 47 H 1.08993 * 109.47207 * 23.53572 * 27 26 17 48 48 H 1.09002 * 109.46458 * 143.53531 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0968 -3.4169 10 1 6.1417 0.6402 -3.5938 11 1 6.1609 2.7968 -4.7030 12 1 6.8407 2.6210 -2.3822 13 6 2.2431 2.0164 1.1672 14 8 2.6470 3.1600 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2031 3.5858 17 6 2.1562 1.7636 4.9031 18 6 1.7006 0.4750 5.1571 19 6 1.5459 0.0357 6.4584 20 6 1.8419 0.8737 7.5144 21 6 2.2999 2.1694 7.2701 22 6 2.6238 3.0669 8.3997 23 8 3.1285 4.1523 8.1882 24 7 2.3593 2.6815 9.6639 25 6 2.6808 3.5705 10.7831 26 6 2.4565 2.6129 5.9569 27 6 2.9500 4.0105 5.6846 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 1.5817 1.6878 -2.0283 34 1 2.0956 3.1411 -1.1383 35 1 3.6749 3.5158 -4.4443 36 1 2.6230 0.4185 2.5298 37 1 0.9446 1.0113 2.5302 38 1 2.6279 3.1024 3.4087 39 1 1.4668 -0.1851 4.3349 40 1 1.1920 -0.9666 6.6496 41 1 1.7193 0.5268 8.5298 42 1 1.9563 1.8155 9.8327 43 1 2.3979 3.0914 11.7205 44 1 3.7513 3.7752 10.7886 45 1 2.1325 4.5061 10.6729 46 1 4.0387 4.0271 5.7325 47 1 2.6250 4.3237 4.6925 48 1 2.5429 4.6915 6.4321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088524275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:42 Heat of formation + Delta-G solvation = -62.823889 kcal Electronic energy + Delta-G solvation = -28287.324703 eV Core-core repulsion = 24341.291294 eV Total energy + Delta-G solvation = -3946.033409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48950 -40.87929 -39.57995 -37.15214 -36.26970 -35.72186 -34.91589 -33.49568 -31.77577 -31.35451 -29.63679 -28.37526 -27.41499 -27.15167 -24.93121 -24.27244 -23.54844 -22.25321 -21.32114 -20.09555 -19.18026 -18.64416 -18.13481 -17.70310 -17.10381 -16.73742 -16.60490 -16.49487 -16.30482 -16.26920 -15.80461 -15.13822 -14.91862 -14.68452 -14.57540 -14.55507 -14.18697 -14.11573 -13.97153 -13.69316 -13.56293 -13.27940 -13.26470 -13.11325 -13.01635 -12.92073 -12.66712 -12.60950 -12.47504 -12.17776 -12.04277 -11.90590 -11.76306 -11.10908 -10.76574 -10.70116 -10.66376 -10.19807 -9.66197 -9.51523 -8.36389 -8.24814 -6.39469 -0.03982 0.63263 1.34643 1.39060 1.45951 1.68686 1.92733 1.99195 2.27153 2.37260 2.64038 2.97320 3.04995 3.53205 3.77853 3.94462 4.06409 4.11006 4.16977 4.27758 4.33770 4.45176 4.45904 4.53060 4.63717 4.64167 4.66426 4.72656 4.77412 4.87759 4.93070 4.97315 4.99112 5.05586 5.19359 5.22646 5.33446 5.41286 5.43731 5.53002 5.54150 5.57176 5.78953 5.87306 6.03083 6.29884 6.55823 6.60200 6.67600 6.75156 7.22631 7.24020 7.37523 8.82058 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.002386 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.109127 B =11732.291631 C =12684.209468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.489 3.511 14 O -0.595 6.595 15 C 0.121 3.879 16 N -0.745 5.745 17 C 0.197 3.803 18 C -0.173 4.173 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.111 4.111 22 C 0.548 3.452 23 O -0.573 6.573 24 N -0.717 5.717 25 C 0.084 3.916 26 C -0.126 4.126 27 C -0.103 4.103 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.026 0.974 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.400 0.600 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.418 0.582 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 -13.376 27.008 31.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.277 3.723 14 O -0.476 6.476 15 C -0.006 4.006 16 N -0.378 5.378 17 C 0.094 3.906 18 C -0.196 4.196 19 C -0.094 4.094 20 C -0.156 4.156 21 C -0.115 4.115 22 C 0.337 3.663 23 O -0.454 6.454 24 N -0.369 5.369 25 C -0.059 4.059 26 C -0.131 4.131 27 C -0.160 4.160 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.238 0.762 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.175 0.825 42 H 0.256 0.744 43 H 0.134 0.866 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.493 -12.071 26.541 30.105 hybrid contribution 1.003 0.822 -1.114 1.709 sum -6.491 -11.248 25.428 28.552 Atomic orbital electron populations 1.22170 0.94370 1.03776 1.01715 1.21864 0.95452 0.80868 1.04490 1.48227 1.63226 1.15313 1.05889 1.18722 0.95376 0.91500 0.80327 1.21667 0.97867 1.32074 1.06500 0.92760 1.25861 1.02343 0.94520 0.96522 1.70040 1.37800 1.34112 1.14781 0.85487 0.79034 0.79137 0.77271 1.18208 1.20418 1.20614 1.21177 0.77573 0.86660 0.86846 1.90643 1.48458 1.20796 1.87734 1.21195 1.03822 0.93170 0.82440 1.44706 1.74080 1.17215 1.01813 1.17747 0.95766 0.93875 0.83246 1.21206 1.05132 0.93753 0.99504 1.21229 0.96792 1.00719 0.90615 1.21330 1.01502 0.91682 1.01114 1.19518 1.04676 0.95959 0.91359 1.18640 0.77757 0.85755 0.84111 1.90723 1.45152 1.24417 1.85099 1.45636 1.63707 1.22438 1.05149 1.21699 1.00723 0.94600 0.88926 1.19503 1.05050 0.96609 0.91983 1.20704 1.00514 0.94012 1.00770 0.94476 0.88224 0.91999 0.90664 0.87500 0.95641 0.98685 0.92409 0.87070 0.86530 0.76206 0.83421 0.81605 0.82475 0.74401 0.86601 0.93264 0.93272 0.92645 0.93758 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.10 2.61 5.93 86.38 0.51 3.12 16 3 N -0.60 -24.15 2.46 -826.17 -2.03 -26.18 16 4 C 0.26 13.99 5.16 85.63 0.44 14.44 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.87 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.38 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 9 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.49 19.70 7.74 87.66 0.68 20.38 16 14 O -0.59 -30.61 15.25 -3.03 -0.05 -30.66 16 15 C 0.12 3.24 3.94 85.63 0.34 3.57 16 16 N -0.75 -22.25 5.61 -343.23 -1.93 -24.17 16 17 C 0.20 5.04 6.63 38.17 0.25 5.29 16 18 C -0.17 -3.08 9.31 22.45 0.21 -2.87 16 19 C -0.08 -0.96 10.02 22.21 0.22 -0.73 16 20 C -0.14 -1.88 9.52 22.54 0.21 -1.67 16 21 C -0.11 -2.49 5.87 -20.11 -0.12 -2.61 16 22 C 0.55 12.84 7.70 86.79 0.67 13.51 16 23 O -0.57 -18.18 13.34 -3.89 -0.05 -18.23 16 24 N -0.72 -9.81 5.66 -487.43 -2.76 -12.57 16 25 C 0.08 0.93 10.70 127.77 1.37 2.30 16 26 C -0.13 -3.48 5.93 -19.47 -0.12 -3.60 16 27 C -0.10 -3.25 8.43 71.24 0.60 -2.65 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 31 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 32 H 0.11 2.05 6.44 -2.39 -0.02 2.04 16 33 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 34 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.11 2.40 7.20 -2.39 -0.02 2.38 16 37 H 0.12 2.36 6.99 -2.39 -0.02 2.35 16 38 H 0.40 14.25 5.29 -92.71 -0.49 13.76 16 39 H 0.15 1.92 6.71 -2.91 -0.02 1.90 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.16 0.87 6.44 -2.91 -0.02 0.85 16 42 H 0.42 2.60 6.90 -92.71 -0.64 1.96 16 43 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.42 6.23 -2.39 -0.01 1.41 16 48 H 0.08 2.66 5.86 -2.39 -0.01 2.65 16 Total: -1.00 -84.13 390.32 2.08 -82.06 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.13 Total: 23.05 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.71 Total: 15.63 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.43 Total: -119.02 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.10 Total: -48.89 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -84.13 2.08 -82.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.232 kcal (2) G-P(sol) polarization free energy of solvation -84.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds