Wall clock time and date at job start Tue Mar 31 2020 18:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47142 * 2 1 4 4 C 1.46494 * 119.99980 * 274.64928 * 3 2 1 5 5 C 1.50700 * 109.47319 * 277.20444 * 4 3 2 6 6 H 1.08001 * 119.99406 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00466 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00463 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99728 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47560 * 90.00553 * 9 7 5 11 11 H 1.48507 * 109.47109 * 210.00334 * 9 7 5 12 12 H 1.48495 * 109.47239 * 330.00033 * 9 7 5 13 13 C 1.34780 * 119.99958 * 94.64648 * 3 2 1 14 14 O 1.21280 * 119.99896 * 5.24746 * 13 3 2 15 15 C 1.50696 * 119.99846 * 185.24436 * 13 3 2 16 16 C 1.53008 * 109.47071 * 191.74810 * 15 13 3 17 17 C 1.53001 * 109.47461 * 71.74799 * 15 13 3 18 18 N 1.46496 * 109.47209 * 311.74735 * 15 13 3 19 19 C 1.34783 * 120.00183 * 174.32976 * 18 15 13 20 20 O 1.21582 * 119.99709 * 359.97438 * 19 18 15 21 21 N 1.34777 * 119.99953 * 180.02562 * 19 18 15 22 22 C 1.39950 * 119.99712 * 185.22130 * 21 19 18 23 23 C 1.38869 * 120.06768 * 31.98406 * 22 21 19 24 24 C 1.38113 * 119.92760 * 179.97438 * 23 22 21 25 25 C 1.38283 * 120.06910 * 359.97438 * 24 23 22 26 26 C 1.38279 * 120.14237 * 0.03809 * 25 24 23 27 27 C 1.38118 * 120.06790 * 359.96330 * 26 25 24 28 28 H 1.09001 * 109.47235 * 64.99968 * 1 2 3 29 29 H 1.08999 * 109.47001 * 184.99976 * 1 2 3 30 30 H 1.09003 * 109.47047 * 304.99642 * 1 2 3 31 31 H 1.08994 * 109.47131 * 239.99794 * 2 1 3 32 32 H 1.08997 * 109.46827 * 120.00140 * 2 1 3 33 33 H 1.09000 * 109.47236 * 37.20296 * 4 3 2 34 34 H 1.09001 * 109.46943 * 157.20325 * 4 3 2 35 35 H 0.96997 * 119.99983 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46874 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.46706 * 299.99948 * 16 15 13 38 38 H 1.08994 * 109.46793 * 59.99857 * 16 15 13 39 39 H 1.08997 * 109.47121 * 300.00264 * 17 15 13 40 40 H 1.09002 * 109.46696 * 59.99690 * 17 15 13 41 41 H 1.08997 * 109.47301 * 179.97438 * 17 15 13 42 42 H 0.97004 * 120.00122 * 354.32839 * 18 15 13 43 43 H 0.96995 * 119.99876 * 5.21779 * 21 19 18 44 44 H 1.08000 * 120.03586 * 359.70312 * 23 22 21 45 45 H 1.08000 * 119.96943 * 179.97438 * 24 23 22 46 46 H 1.08002 * 119.92870 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.96781 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.03273 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1656 2.1061 -1.2645 5 6 3.4824 1.7432 -1.9012 6 1 4.1437 1.0430 -1.4125 7 6 3.8434 2.3059 -3.1070 8 7 4.9924 1.9889 -3.6629 9 14 2.6999 3.5175 -3.9518 10 1 3.0156 4.8956 -3.4974 11 1 2.8827 3.4274 -5.4229 12 1 1.2925 3.1928 -3.6071 13 6 2.3322 1.9850 1.1634 14 8 2.3016 1.3567 2.2003 15 6 2.7210 3.4409 1.1758 16 6 3.3035 3.8016 2.5439 17 6 1.4852 4.3013 0.9047 18 7 3.7247 3.6871 0.1374 19 6 4.1390 4.9447 -0.1147 20 8 3.6794 5.8747 0.5193 21 7 5.0620 5.1712 -1.0704 22 6 5.5727 6.4606 -1.2583 23 6 5.6988 7.3234 -0.1775 24 6 6.2036 8.5950 -0.3662 25 6 6.5837 9.0091 -1.6296 26 6 6.4592 8.1524 -2.7079 27 6 5.9551 6.8795 -2.5258 28 1 -0.3634 0.4343 -0.9314 29 1 -0.3633 -1.0238 0.0896 30 1 -0.3633 0.5894 0.8419 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3506 1.8350 -1.9357 34 1 2.1376 3.1789 -1.0737 35 1 5.2465 2.3850 -4.5110 36 1 3.5843 4.8548 2.5529 37 1 2.5566 3.6184 3.3164 38 1 4.1838 3.1887 2.7369 39 1 1.0702 4.0443 -0.0699 40 1 0.7384 4.1180 1.6773 41 1 1.7664 5.3543 0.9141 42 1 4.0911 2.9451 -0.3686 43 1 5.3724 4.4405 -1.6277 44 1 5.3983 7.0019 0.8088 45 1 6.3015 9.2667 0.4738 46 1 6.9786 10.0039 -1.7745 47 1 6.7566 8.4789 -3.6935 48 1 5.8577 6.2111 -3.3684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161197462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:20 Heat of formation + Delta-G solvation = -21.001450 kcal Electronic energy + Delta-G solvation = -30894.988536 eV Core-core repulsion = 26950.768683 eV Total energy + Delta-G solvation = -3944.219852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77100 -39.61201 -38.21956 -35.66981 -35.44789 -34.19289 -32.96880 -31.16044 -30.69353 -30.63724 -28.64274 -27.90718 -26.91317 -24.25389 -22.97272 -22.81994 -22.33441 -21.20996 -19.97944 -18.65580 -17.82978 -17.41330 -17.18186 -16.61700 -15.82894 -15.64620 -15.13496 -14.97269 -14.62474 -14.45031 -14.07100 -13.81098 -13.60016 -13.41195 -13.15956 -13.13626 -12.85144 -12.68194 -12.57955 -12.39289 -12.02491 -11.86495 -11.80376 -11.56116 -11.44325 -11.40310 -11.16279 -11.01750 -10.93761 -10.81646 -10.60385 -10.41025 -10.02289 -9.89591 -9.67233 -9.07032 -9.00614 -8.68826 -8.50191 -7.95076 -7.71463 -6.54478 -4.59350 1.56328 1.64201 2.75784 3.00995 3.08703 3.14196 3.33980 3.53952 3.61211 4.01309 4.13702 4.55082 4.83399 4.90796 5.12815 5.14723 5.31815 5.36503 5.38416 5.51921 5.63552 5.64950 5.72741 5.78119 5.86163 5.96093 6.02870 6.12816 6.15207 6.22158 6.23223 6.26547 6.36786 6.44762 6.53355 6.57900 6.58254 6.61791 6.65814 6.74630 6.86576 6.98606 7.11343 7.21878 7.33233 7.45607 7.84904 8.14599 8.45219 8.52185 8.66339 9.01447 9.04003 10.54305 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.005106 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.547028 B = 5482.491626 C = 7035.942790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.585 5.585 4 C 0.186 3.814 5 C -0.556 4.556 6 H 0.085 0.915 7 C 0.086 3.914 8 N -0.873 5.873 9 Si 0.855 3.145 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.263 1.263 13 C 0.517 3.483 14 O -0.554 6.554 15 C 0.180 3.820 16 C -0.142 4.142 17 C -0.170 4.170 18 N -0.722 5.722 19 C 0.710 3.290 20 O -0.589 6.589 21 N -0.685 5.685 22 C 0.183 3.817 23 C -0.126 4.126 24 C -0.103 4.103 25 C -0.151 4.151 26 C -0.101 4.101 27 C -0.154 4.154 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.055 0.945 35 H 0.271 0.729 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.424 0.576 43 H 0.417 0.583 44 H 0.139 0.861 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 6.957 2.839 7.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.315 5.315 4 C 0.065 3.935 5 C -0.594 4.594 6 H 0.103 0.897 7 C -0.120 4.120 8 N -0.509 5.509 9 Si 0.680 3.320 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.187 1.187 13 C 0.303 3.697 14 O -0.432 6.432 15 C 0.090 3.910 16 C -0.201 4.201 17 C -0.228 4.228 18 N -0.389 5.389 19 C 0.411 3.589 20 O -0.468 6.468 21 N -0.332 5.332 22 C 0.087 3.913 23 C -0.147 4.147 24 C -0.122 4.122 25 C -0.170 4.170 26 C -0.119 4.119 27 C -0.175 4.175 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.274 0.726 43 H 0.255 0.745 44 H 0.156 0.844 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.204 7.300 3.787 8.312 hybrid contribution -0.308 -0.247 -1.498 1.549 sum -1.512 7.053 2.289 7.568 Atomic orbital electron populations 1.22117 0.96699 1.01522 1.01842 1.21329 0.93395 0.83305 1.03226 1.47968 1.62647 1.13726 1.07162 1.20308 0.97962 0.93873 0.81393 1.21389 1.02718 1.28824 1.06464 0.89704 1.24861 0.94813 0.96091 0.96281 1.69902 1.20729 1.42139 1.18130 0.87136 0.82474 0.82579 0.79779 1.18729 1.20545 1.18718 1.20403 0.77254 0.88361 0.83645 1.90624 1.54761 1.65410 1.32420 1.20226 0.89614 0.91854 0.89290 1.21975 1.01305 1.02632 0.94175 1.22409 0.95593 1.02948 1.01872 1.46297 1.44013 1.08535 1.40069 1.15867 0.79088 0.83879 0.80095 1.90776 1.60171 1.42810 1.53068 1.42825 1.42892 1.09554 1.37902 1.17597 0.95395 0.84941 0.93362 1.21247 1.00172 0.94130 0.99108 1.20983 0.98436 0.95679 0.97081 1.21014 1.03154 0.99714 0.93111 1.20856 0.99148 0.93159 0.98776 1.20945 1.03985 0.97211 0.95363 0.92663 0.92091 0.92868 0.90006 0.90419 0.95064 0.92776 0.91833 0.90450 0.91386 0.92420 0.91906 0.91971 0.88285 0.72588 0.74538 0.84365 0.86208 0.86537 0.86118 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.88 6.23 -4.04 -0.03 1.86 16 3 N -0.58 -11.23 2.46 -175.07 -0.43 -11.66 16 4 C 0.19 3.80 3.38 -5.20 -0.02 3.78 16 5 C -0.56 -12.67 7.23 -34.44 -0.25 -12.92 16 6 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.09 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.87 -21.70 13.96 55.43 0.77 -20.92 16 9 Si 0.85 18.26 27.47 -169.99 -4.67 13.59 16 10 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 13 C 0.52 10.16 6.52 -10.99 -0.07 10.09 16 14 O -0.55 -11.77 15.47 5.56 0.09 -11.69 16 15 C 0.18 3.30 0.63 -132.97 -0.08 3.21 16 16 C -0.14 -2.42 7.85 37.16 0.29 -2.13 16 17 C -0.17 -2.92 8.01 37.16 0.30 -2.62 16 18 N -0.72 -13.78 3.22 -53.50 -0.17 -13.96 16 19 C 0.71 13.65 7.74 -86.91 -0.67 12.97 16 20 O -0.59 -11.71 10.16 5.29 0.05 -11.66 16 21 N -0.68 -12.55 5.35 -14.22 -0.08 -12.62 16 22 C 0.18 3.14 6.31 -83.69 -0.53 2.61 16 23 C -0.13 -2.03 8.67 -39.39 -0.34 -2.37 16 24 C -0.10 -1.39 10.04 -39.61 -0.40 -1.79 16 25 C -0.15 -1.88 10.04 -39.55 -0.40 -2.28 16 26 C -0.10 -1.33 10.04 -39.61 -0.40 -1.73 16 27 C -0.15 -2.39 9.96 -39.40 -0.39 -2.78 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 32 H 0.08 1.35 7.23 -51.93 -0.38 0.97 16 33 H 0.03 0.65 7.18 -51.93 -0.37 0.28 16 34 H 0.05 1.12 3.04 -51.93 -0.16 0.96 16 35 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.08 1.31 6.59 -51.93 -0.34 0.97 16 37 H 0.07 1.10 7.97 -51.93 -0.41 0.68 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.10 6.01 -51.93 -0.31 0.79 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.77 5.77 -51.93 -0.30 1.47 16 42 H 0.42 8.66 4.66 -40.82 -0.19 8.47 16 43 H 0.42 7.79 8.83 -40.82 -0.36 7.42 16 44 H 0.14 2.36 6.30 -52.49 -0.33 2.03 16 45 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -26.15 378.19 -8.41 -34.56 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -6.97 Total: 22.82 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.70 Total: 5.85 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.09 Total: -59.16 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.14 Total: -23.35 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.67 Total: 13.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.15 -8.41 -34.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161197462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.556 kcal (2) G-P(sol) polarization free energy of solvation -26.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds