Wall clock time and date at job start Tue Mar 31 2020 18:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47151 * 2 1 4 4 C 1.46505 * 119.99945 * 270.00363 * 3 2 1 5 5 C 1.50692 * 109.46827 * 269.99722 * 4 3 2 6 6 H 1.08005 * 120.00372 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99741 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47401 * 119.99986 * 9 7 5 12 12 H 1.48503 * 109.47488 * 240.00018 * 9 7 5 13 13 C 1.34774 * 119.99868 * 90.00023 * 3 2 1 14 14 O 1.21288 * 119.99878 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00076 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47212 * 179.97438 * 15 13 3 17 17 C 1.34781 * 119.99902 * 180.02562 * 16 15 13 18 18 O 1.21586 * 120.00236 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99778 * 180.02562 * 17 16 15 20 20 C 1.46499 * 120.00064 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.47329 * 180.02562 * 20 19 17 22 22 C 1.38233 * 120.00207 * 89.99403 * 21 20 19 23 23 C 1.38234 * 120.00037 * 179.72405 * 22 21 20 24 24 C 1.38234 * 120.00240 * 0.26327 * 23 22 21 25 25 C 1.50700 * 120.00260 * 179.97438 * 24 23 22 26 26 C 1.38238 * 119.99693 * 0.02562 * 24 23 22 27 27 C 1.38234 * 120.00047 * 359.95697 * 26 24 23 28 28 H 1.09006 * 109.46788 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46570 * 299.99573 * 1 2 3 30 30 H 1.08990 * 109.47229 * 59.99736 * 1 2 3 31 31 H 1.09009 * 109.47070 * 240.00139 * 2 1 3 32 32 H 1.09003 * 109.47376 * 120.00199 * 2 1 3 33 33 H 1.08997 * 109.46996 * 29.99672 * 4 3 2 34 34 H 1.08999 * 109.46936 * 149.99655 * 4 3 2 35 35 H 0.97010 * 119.99501 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46974 * 60.00044 * 15 13 3 37 37 H 1.08993 * 109.47422 * 300.00210 * 15 13 3 38 38 H 0.96996 * 119.99921 * 359.97438 * 16 15 13 39 39 H 0.97003 * 119.99660 * 359.97438 * 19 17 16 40 40 H 1.09000 * 109.46981 * 60.00022 * 20 19 17 41 41 H 1.09001 * 109.46676 * 299.99836 * 20 19 17 42 42 H 1.08002 * 120.00157 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.00009 * 180.28389 * 23 22 21 44 44 H 1.09000 * 109.46827 * 89.99810 * 25 24 23 45 45 H 1.08999 * 109.47240 * 210.00239 * 25 24 23 46 46 H 1.08999 * 109.46861 * 329.99859 * 25 24 23 47 47 H 1.08001 * 119.99658 * 179.97438 * 26 24 23 48 48 H 1.07999 * 119.99990 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3495 3.1274 -3.6171 9 14 5.9132 2.0965 -3.4171 10 1 6.6007 1.2405 -2.4172 11 1 5.9203 1.4184 -4.7383 12 1 6.6215 3.3973 -3.5248 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9924 1.3059 2.4722 16 7 2.3102 2.2033 3.5858 17 6 2.1614 1.7793 4.8565 18 8 1.7631 0.6522 5.0787 19 7 2.4533 2.6050 5.8809 20 6 2.2911 2.1444 7.2621 21 6 2.6810 3.2497 8.2093 22 6 1.7309 4.1549 8.6439 23 6 2.0874 5.1653 9.5173 24 6 3.3951 5.2740 9.9518 25 6 3.7839 6.3759 10.9035 26 6 4.3466 4.3724 9.5126 27 6 3.9900 3.3617 8.6395 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 3.6758 3.5186 -4.4427 36 1 2.6230 0.4186 2.5298 37 1 0.9446 1.0113 2.5302 38 1 2.6284 3.1023 3.4086 39 1 2.7708 3.5043 5.7036 40 1 2.9288 1.2771 7.4331 41 1 1.2503 1.8698 7.4336 42 1 0.7090 4.0697 8.3049 43 1 1.3441 5.8697 9.8604 44 1 3.6637 6.0288 11.9298 45 1 4.8242 6.6530 10.7331 46 1 3.1449 7.2429 10.7359 47 1 5.3684 4.4575 9.8518 48 1 4.7332 2.6571 8.2967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264056580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:28 Heat of formation + Delta-G solvation = -70.671712 kcal Electronic energy + Delta-G solvation = -27405.840593 eV Core-core repulsion = 23459.466876 eV Total energy + Delta-G solvation = -3946.373716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43451 -40.65346 -40.09597 -37.12426 -36.31424 -35.49270 -34.86587 -33.52313 -31.84836 -31.65978 -30.32518 -29.15911 -27.76686 -25.41696 -24.70677 -24.00585 -23.64310 -21.98003 -21.74193 -20.45542 -19.51218 -18.60687 -17.97670 -17.59429 -17.14507 -16.96244 -16.64335 -16.52125 -16.21381 -15.94215 -15.85916 -15.19498 -15.10364 -14.73186 -14.61182 -14.52864 -14.32292 -14.16748 -13.99135 -13.63224 -13.56125 -13.43184 -13.24341 -13.04547 -12.89770 -12.84421 -12.68489 -12.50156 -12.17788 -12.00386 -11.90513 -11.85951 -11.69268 -11.49913 -10.77324 -10.64779 -10.46493 -9.89234 -9.83171 -9.54240 -9.50322 -8.22928 -6.37026 0.24150 0.48334 1.36926 1.38732 1.50197 1.58759 1.66561 2.08660 2.29308 2.43155 2.81348 3.07140 3.34745 3.50941 3.67208 3.89155 4.07283 4.10529 4.13298 4.26199 4.28752 4.35176 4.44483 4.54546 4.64483 4.66507 4.67061 4.84205 4.86354 4.91054 4.95404 4.98217 5.06024 5.17804 5.19600 5.27032 5.28621 5.39260 5.41464 5.45991 5.55988 5.64688 5.69438 5.79860 5.90691 6.05373 6.08180 6.63764 6.73674 6.96376 7.21853 7.37516 7.47827 8.84383 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014732 B = 0.002041 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.201952 B =13716.655411 C =14868.860390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.585 6.585 15 C 0.134 3.866 16 N -0.732 5.732 17 C 0.708 3.292 18 O -0.626 6.626 19 N -0.730 5.730 20 C 0.186 3.814 21 C -0.122 4.122 22 C -0.102 4.102 23 C -0.132 4.132 24 C -0.086 4.086 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.103 4.103 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.026 0.974 34 H 0.002 0.998 35 H 0.267 0.733 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.409 0.591 39 H 0.407 0.593 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.138 0.862 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 0.112 27.507 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.325 5.325 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.467 6.467 15 C 0.006 3.994 16 N -0.390 5.390 17 C 0.408 3.592 18 O -0.507 6.507 19 N -0.386 5.386 20 C 0.063 3.937 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.150 4.150 24 C -0.086 4.086 25 C -0.173 4.173 26 C -0.150 4.150 27 C -0.121 4.121 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.246 0.754 39 H 0.243 0.757 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.156 0.844 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.884 -0.256 27.514 27.666 hybrid contribution 1.050 0.895 -1.076 1.749 sum -1.834 0.639 26.438 26.509 Atomic orbital electron populations 1.22155 0.94449 1.03639 1.01748 1.21827 0.95442 0.81163 1.04250 1.48195 1.63128 1.15121 1.06050 1.18777 0.95411 0.91738 0.80037 1.21730 0.97824 1.31917 1.06534 0.92768 1.25840 1.02292 0.94539 0.96480 1.70058 1.37616 1.34159 1.14850 0.85375 0.79142 0.77971 0.78351 1.19187 1.19578 1.20766 1.20895 0.77709 0.86632 0.86408 1.90626 1.48314 1.20084 1.87636 1.20906 1.03773 0.92583 0.82089 1.44790 1.72019 1.18656 1.03500 1.15866 0.78508 0.84267 0.80583 1.90888 1.54994 1.20243 1.84622 1.45084 1.71799 1.17107 1.04603 1.19999 1.01763 0.94585 0.77376 1.19788 0.94560 0.97796 1.00072 1.21270 0.99714 0.94143 0.96888 1.21307 0.96419 0.99003 0.98236 1.20342 0.93632 0.97025 0.97623 1.20867 1.02655 0.95817 0.97926 1.21303 1.00307 0.95165 0.98253 1.21269 0.95522 0.98391 0.96956 0.88652 0.92361 0.93816 0.90302 0.88376 0.95616 0.98001 0.92420 0.87857 0.87296 0.75375 0.75726 0.91164 0.91001 0.85053 0.84327 0.90184 0.90814 0.90739 0.84437 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.31 16 2 C 0.10 2.88 5.93 86.38 0.51 3.39 16 3 N -0.59 -24.52 2.46 -826.14 -2.03 -26.55 16 4 C 0.26 13.81 5.16 85.63 0.44 14.25 16 5 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 9 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.50 19.93 7.74 87.66 0.68 20.61 16 14 O -0.59 -28.37 15.25 -3.06 -0.05 -28.42 16 15 C 0.13 4.09 4.71 85.63 0.40 4.49 16 16 N -0.73 -21.28 5.53 -482.29 -2.67 -23.95 16 17 C 0.71 20.01 8.57 179.05 1.53 21.54 16 18 O -0.63 -21.38 16.34 -3.99 -0.07 -21.44 16 19 N -0.73 -15.57 5.55 -482.30 -2.68 -18.24 16 20 C 0.19 3.50 5.80 85.63 0.50 3.99 16 21 C -0.12 -1.96 5.25 -19.87 -0.10 -2.07 16 22 C -0.10 -1.51 9.70 22.27 0.22 -1.29 16 23 C -0.13 -1.75 9.70 22.27 0.22 -1.54 16 24 C -0.09 -1.11 5.88 -19.86 -0.12 -1.23 16 25 C -0.12 -0.95 10.01 71.24 0.71 -0.24 16 26 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 27 C -0.10 -1.57 9.70 22.27 0.22 -1.35 16 28 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.08 2.50 8.07 -2.38 -0.02 2.48 16 32 H 0.10 2.39 6.44 -2.39 -0.02 2.38 16 33 H 0.03 1.38 8.07 -2.39 -0.02 1.37 16 34 H 0.00 0.11 7.42 -2.39 -0.02 0.10 16 35 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 36 H 0.10 2.94 7.40 -2.38 -0.02 2.92 16 37 H 0.11 2.96 7.19 -2.39 -0.02 2.94 16 38 H 0.41 11.96 7.45 -92.71 -0.69 11.27 16 39 H 0.41 7.40 8.48 -92.71 -0.79 6.61 16 40 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 41 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 42 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 46 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 47 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 48 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.96 405.08 1.18 -73.78 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.50 Total: 27.32 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.86 Total: 26.07 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -7.09 Total: -123.92 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.11 Total: -49.86 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.96 1.18 -73.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264056580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.104 kcal (2) G-P(sol) polarization free energy of solvation -74.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds