Wall clock time and date at job start Tue Mar 31 2020 17:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47021 * 2 1 4 4 C 1.50701 * 109.47482 * 119.99924 * 2 1 3 5 5 O 1.21284 * 120.00472 * 95.64094 * 4 2 1 6 6 N 1.34782 * 119.99786 * 275.64624 * 4 2 1 7 7 C 1.46491 * 120.00258 * 5.62723 * 6 4 2 8 8 C 1.50703 * 109.47169 * 92.22899 * 7 6 4 9 9 H 1.08000 * 119.99624 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00109 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00013 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99754 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47223 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46804 * 120.00083 * 12 10 8 15 15 H 1.48497 * 109.47237 * 239.99616 * 12 10 8 16 16 C 1.39928 * 119.99798 * 185.63337 * 6 4 2 17 17 C 1.38872 * 120.07029 * 7.24746 * 16 6 4 18 18 C 1.38115 * 119.92729 * 179.76997 * 17 16 6 19 19 C 1.38279 * 120.07157 * 0.48317 * 18 17 16 20 20 C 1.38279 * 120.13736 * 359.76841 * 19 18 17 21 21 C 1.38104 * 120.07500 * 0.02562 * 20 19 18 22 22 N 1.46902 * 109.47619 * 239.99868 * 2 1 3 23 23 C 1.46898 * 111.00556 * 182.41947 * 22 2 1 24 24 C 1.46905 * 110.99536 * 58.46399 * 22 2 1 25 25 C 1.53003 * 109.46888 * 190.00369 * 24 22 2 26 26 C 1.50694 * 109.47172 * 179.97438 * 25 24 22 27 27 N 1.34776 * 120.00432 * 179.97438 * 26 25 24 28 28 O 1.21292 * 120.00132 * 0.02562 * 26 25 24 29 29 H 1.09003 * 109.46568 * 172.99209 * 1 2 3 30 30 H 1.08995 * 109.46852 * 292.99147 * 1 2 3 31 31 H 1.08999 * 109.47022 * 52.99217 * 1 2 3 32 32 H 1.08996 * 109.47412 * 212.22884 * 7 6 4 33 33 H 1.09000 * 109.47200 * 332.22822 * 7 6 4 34 34 H 0.97002 * 119.99867 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.03681 * 359.97438 * 17 16 6 36 36 H 1.07996 * 119.96345 * 180.25448 * 18 17 16 37 37 H 1.07998 * 119.93023 * 179.74884 * 19 18 17 38 38 H 1.08010 * 119.96273 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.03854 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.46761 * 54.85480 * 23 22 2 41 41 H 1.08995 * 109.47240 * 174.85879 * 23 22 2 42 42 H 1.09000 * 109.46697 * 294.86295 * 23 22 2 43 43 H 1.09002 * 109.46812 * 310.00188 * 24 22 2 44 44 H 1.08997 * 109.47340 * 70.00506 * 24 22 2 45 45 H 1.08997 * 109.46716 * 300.00013 * 25 24 22 46 46 H 1.08997 * 109.47019 * 59.99940 * 25 24 22 47 47 H 0.97001 * 119.99557 * 0.02562 * 27 26 25 48 48 H 0.97002 * 120.00298 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3320 -1.8843 1.1733 6 7 2.1488 -0.0412 2.3946 7 6 1.6723 1.3403 2.4962 8 6 0.2458 1.3452 2.9822 9 1 -0.2557 0.4124 3.1938 10 6 -0.4193 2.5405 3.1557 11 7 0.1912 3.6763 2.8976 12 14 -2.1877 2.5464 3.7575 13 1 -2.6414 1.1492 3.9745 14 1 -2.2732 3.2982 5.0353 15 1 -3.0541 3.1967 2.7418 16 6 2.7250 -0.6660 3.5062 17 6 3.3126 -1.9174 3.3741 18 6 3.8846 -2.5294 4.4722 19 6 3.8638 -1.9018 5.7043 20 6 3.2749 -0.6581 5.8401 21 6 2.7049 -0.0390 4.7451 22 7 2.0198 -0.6925 -1.1994 23 6 3.4871 -0.7625 -1.2048 24 6 1.5190 -0.0479 -2.4208 25 6 1.8370 -0.9298 -3.6300 26 6 1.3227 -0.2689 -4.8828 27 7 1.4913 -0.8676 -6.0785 28 8 0.7579 0.8024 -4.8153 29 1 -0.3632 -1.0200 -0.1254 30 1 -0.3633 0.4014 0.9460 31 1 -0.3633 0.6186 -0.8206 32 1 2.2977 1.8896 3.1998 33 1 1.7240 1.8155 1.5166 34 1 -0.2768 4.5171 3.0193 35 1 3.3252 -2.4100 2.4131 36 1 4.3454 -3.5007 4.3693 37 1 4.3082 -2.3843 6.5622 38 1 3.2599 -0.1707 6.8038 39 1 2.2447 0.9322 4.8519 40 1 3.8321 -1.2248 -0.2799 41 1 3.8193 -1.3582 -2.0549 42 1 3.8984 0.2439 -1.2832 43 1 0.4402 0.0879 -2.3437 44 1 1.9996 0.9228 -2.5426 45 1 2.9157 -1.0656 -3.7069 46 1 1.3563 -1.9004 -3.5081 47 1 1.9433 -1.7241 -6.1325 48 1 1.1606 -0.4420 -6.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286302059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:10 Heat of formation + Delta-G solvation = -23.295712 kcal Electronic energy + Delta-G solvation = -29556.179340 eV Core-core repulsion = 25611.860001 eV Total energy + Delta-G solvation = -3944.319339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44785 -39.64053 -38.23578 -36.72384 -35.28363 -33.85061 -32.75086 -32.03594 -30.29050 -30.17155 -29.10375 -27.35130 -25.80077 -24.29015 -23.42574 -22.59890 -21.66463 -20.81386 -20.14752 -18.70139 -17.50030 -17.15773 -16.76129 -16.63084 -16.46538 -15.89467 -15.54311 -15.05993 -14.84978 -14.58695 -14.31520 -14.11034 -13.66663 -13.46713 -13.27646 -13.10473 -12.82739 -12.72632 -12.51845 -12.17366 -12.05638 -11.81406 -11.61220 -11.47422 -11.38015 -11.09358 -10.99557 -10.91780 -10.79339 -10.61292 -10.51804 -10.26502 -10.10601 -10.02173 -9.89603 -9.18575 -8.72652 -8.62969 -8.32452 -8.05652 -7.18148 -6.28502 -4.36233 1.87809 2.02202 2.50551 3.17537 3.18053 3.23559 3.27981 3.33843 3.59225 4.21709 4.27829 4.51507 4.73723 4.91383 5.03959 5.04481 5.10954 5.45858 5.47399 5.49678 5.51417 5.57514 5.63780 5.72269 5.76220 5.94106 5.99309 6.08447 6.12779 6.17642 6.22816 6.29813 6.38844 6.55599 6.55828 6.74750 6.88848 6.92037 7.00476 7.06993 7.09271 7.14241 7.20170 7.23684 7.31241 7.64329 7.82614 7.88023 8.09422 8.11316 8.66703 8.80726 9.30741 10.77581 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.004070 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.802548 B = 6877.149754 C = 9326.271298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.077 3.923 3 H 0.070 0.930 4 C 0.525 3.475 5 O -0.526 6.526 6 N -0.536 5.536 7 C 0.226 3.774 8 C -0.537 4.537 9 H 0.066 0.934 10 C 0.070 3.930 11 N -0.886 5.886 12 Si 0.895 3.105 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.172 3.828 17 C -0.176 4.176 18 C -0.109 4.109 19 C -0.163 4.163 20 C -0.105 4.105 21 C -0.144 4.144 22 N -0.523 5.523 23 C 0.015 3.985 24 C 0.066 3.934 25 C -0.137 4.137 26 C 0.517 3.483 27 N -0.860 5.860 28 O -0.541 6.541 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.172 0.828 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.022 0.978 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.401 0.599 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -9.038 -9.702 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.034 4.034 3 H 0.088 0.912 4 C 0.315 3.685 5 O -0.404 6.404 6 N -0.256 5.256 7 C 0.107 3.893 8 C -0.575 4.575 9 H 0.084 0.916 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.722 3.278 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.076 3.924 17 C -0.196 4.196 18 C -0.128 4.128 19 C -0.182 4.182 20 C -0.124 4.124 21 C -0.164 4.164 22 N -0.248 5.248 23 C -0.133 4.133 24 C -0.062 4.062 25 C -0.178 4.178 26 C 0.302 3.698 27 N -0.424 5.424 28 O -0.418 6.418 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.188 0.812 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.229 0.771 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.979 -9.154 -9.547 14.515 hybrid contribution -0.569 0.845 0.035 1.019 sum 5.410 -8.309 -9.511 13.740 Atomic orbital electron populations 1.22034 0.91153 1.02422 1.05464 1.21525 0.98305 0.95910 0.87671 0.91205 1.20441 0.77074 0.86578 0.84397 1.90308 1.49446 1.15945 1.84745 1.46052 1.54613 1.16633 1.08289 1.19757 0.95596 0.74672 0.99287 1.21360 0.96821 0.93195 1.46172 0.91613 1.24904 0.98546 0.95167 0.94794 1.69918 1.37345 0.97657 1.47405 0.86468 0.84152 0.78518 0.78656 1.19449 1.20730 1.20636 1.18064 0.94195 0.92855 0.87334 1.22493 0.99638 0.95238 1.02184 1.20990 0.99625 0.99328 0.92852 1.20964 1.03438 0.96385 0.97397 1.20862 0.98338 0.95279 0.97925 1.21140 1.02197 1.02098 0.91013 1.61752 1.09484 1.52767 1.00781 1.22539 0.87463 0.99728 1.03558 1.21888 1.02297 0.94633 0.87404 1.21630 1.02947 1.01362 0.91839 1.20784 0.78354 0.85114 0.85528 1.43910 1.63238 1.26073 1.09175 1.90779 1.42160 1.21845 1.86975 0.92114 0.87746 0.92033 0.93794 0.93477 0.92333 0.81167 0.86865 0.87224 0.86569 0.84324 0.90316 0.91447 0.95970 0.89111 0.93928 0.88810 0.87759 0.77090 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.64 37.16 0.32 -2.46 16 2 C 0.08 1.39 1.71 -68.86 -0.12 1.27 16 3 H 0.07 1.33 6.26 -51.93 -0.32 1.00 16 4 C 0.53 10.60 5.79 -10.98 -0.06 10.54 16 5 O -0.53 -10.99 11.66 5.55 0.06 -10.93 16 6 N -0.54 -11.38 2.68 -114.74 -0.31 -11.68 16 7 C 0.23 5.16 4.22 -5.20 -0.02 5.14 16 8 C -0.54 -13.24 6.78 -34.44 -0.23 -13.48 16 9 H 0.07 1.69 7.78 -52.49 -0.41 1.29 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -23.36 13.29 55.43 0.74 -22.62 16 12 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.17 3.54 6.49 -83.69 -0.54 3.00 16 17 C -0.18 -3.38 8.98 -39.39 -0.35 -3.73 16 18 C -0.11 -1.81 10.04 -39.61 -0.40 -2.20 16 19 C -0.16 -2.56 10.04 -39.55 -0.40 -2.95 16 20 C -0.11 -1.77 10.04 -39.62 -0.40 -2.17 16 21 C -0.14 -2.84 9.10 -39.40 -0.36 -3.20 16 22 N -0.52 -8.07 4.36 -236.28 -1.03 -9.11 16 23 C 0.02 0.21 8.94 60.06 0.54 0.75 16 24 C 0.07 0.91 4.04 -3.82 -0.02 0.90 16 25 C -0.14 -1.39 5.62 -27.88 -0.16 -1.55 16 26 C 0.52 5.69 8.10 -10.99 -0.09 5.60 16 27 N -0.86 -5.67 8.87 31.22 0.28 -5.40 16 28 O -0.54 -8.56 16.82 5.55 0.09 -8.47 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.10 2.17 5.37 -51.93 -0.28 1.89 16 31 H 0.06 1.03 6.56 -51.93 -0.34 0.69 16 32 H 0.04 1.06 6.68 -51.93 -0.35 0.71 16 33 H 0.05 1.10 5.75 -51.93 -0.30 0.81 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.17 3.40 4.70 -55.30 -0.26 3.14 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.14 2.91 6.22 -52.49 -0.33 2.58 16 40 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 41 H 0.07 0.76 6.53 -51.93 -0.34 0.42 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 1.35 5.88 -51.93 -0.31 1.05 16 44 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 45 H 0.09 0.78 6.58 -51.93 -0.34 0.44 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.40 1.39 8.83 -40.82 -0.36 1.03 16 48 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -30.28 379.50 -8.55 -38.83 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.70 Total: 11.53 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.38 Total: -2.87 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.32 Total: -48.81 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.16 Total: -19.40 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.28 -8.55 -38.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286302059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.529 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds