Wall clock time and date at job start Tue Mar 31 2020 17:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47341 * 2 1 4 4 N 1.46498 * 109.46784 * 119.99713 * 2 1 3 5 5 C 1.34777 * 120.00249 * 274.99735 * 4 2 1 6 6 O 1.21582 * 119.99600 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00089 * 180.02562 * 5 4 2 8 8 C 1.39244 * 119.99949 * 183.29653 * 7 5 4 9 9 C 1.39484 * 119.83160 * 322.12629 * 8 7 5 10 10 C 1.36376 * 120.16459 * 179.71597 * 9 8 7 11 11 C 1.40866 * 119.83212 * 0.58363 * 10 9 8 12 12 C 1.41155 * 120.16708 * 179.67470 * 11 10 9 13 13 H 1.07996 * 120.00106 * 158.01597 * 12 11 10 14 14 C 1.39897 * 119.99439 * 338.01665 * 12 11 10 15 15 N 1.30883 * 120.00381 * 327.57909 * 14 12 11 16 16 Si 1.86801 * 119.99891 * 147.58667 * 14 12 11 17 17 H 1.48504 * 109.47175 * 94.98251 * 16 14 12 18 18 H 1.48495 * 109.47253 * 214.98112 * 16 14 12 19 19 H 1.48496 * 109.46880 * 334.98543 * 16 14 12 20 20 C 1.40867 * 119.67149 * 359.69180 * 11 10 9 21 21 C 1.36380 * 119.83047 * 0.02562 * 20 11 10 22 22 C 1.50700 * 109.47371 * 239.99475 * 2 1 3 23 23 O 1.21274 * 120.00182 * 240.00611 * 22 2 1 24 24 N 1.34777 * 119.99460 * 60.00530 * 22 2 1 25 25 C 1.46504 * 119.99951 * 180.02562 * 24 22 2 26 26 C 1.52995 * 109.47330 * 59.99298 * 25 24 22 27 27 C 1.52997 * 109.47304 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.46476 * 299.99774 * 25 24 22 29 29 H 1.08999 * 109.47270 * 300.00531 * 1 2 3 30 30 H 1.09000 * 109.46593 * 60.00356 * 1 2 3 31 31 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00153 * 95.00008 * 4 2 1 33 33 H 0.97006 * 120.00340 * 3.29024 * 7 5 4 34 34 H 1.07994 * 119.91375 * 0.02562 * 9 8 7 35 35 H 1.08004 * 120.08404 * 180.25375 * 10 9 8 36 36 H 0.96994 * 120.00396 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.08806 * 179.97438 * 20 11 10 38 38 H 1.08001 * 119.91956 * 179.97438 * 21 20 11 39 39 H 0.97000 * 120.00564 * 359.97438 * 24 22 2 40 40 H 1.08999 * 109.47090 * 60.00152 * 26 25 24 41 41 H 1.08999 * 109.47363 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47259 * 300.00814 * 26 25 24 43 43 H 1.08997 * 109.47590 * 59.99850 * 27 25 24 44 44 H 1.08999 * 109.46858 * 179.97438 * 27 25 24 45 45 H 1.08999 * 109.46855 * 299.99046 * 27 25 24 46 46 H 1.09000 * 109.47622 * 60.00367 * 28 25 24 47 47 H 1.09009 * 109.46757 * 180.02562 * 28 25 24 48 48 H 1.08997 * 109.47273 * 299.99449 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1614 2.4118 7 7 2.5967 -0.6534 3.4575 8 6 2.6647 0.0229 4.6728 9 6 3.0506 1.3630 4.7005 10 6 3.1139 2.0335 5.8864 11 6 2.8004 1.3658 7.0865 12 6 2.8703 2.0510 8.3186 13 1 2.3138 1.6888 9.1703 14 6 3.6605 3.1995 8.4363 15 7 4.7615 3.3108 7.7374 16 14 3.1443 4.5740 9.5911 17 1 3.8238 4.4021 10.9003 18 1 3.5256 5.8835 9.0037 19 1 1.6730 4.5291 9.7875 20 6 2.4172 0.0107 7.0510 21 6 2.3528 -0.6450 5.8570 22 6 2.0324 -0.7105 -1.2304 23 8 2.7296 -1.6966 -1.1190 24 7 1.7069 -0.2500 -2.4545 25 6 2.1948 -0.9410 -3.6507 26 6 1.6843 -2.3833 -3.6504 27 6 1.6855 -0.2193 -4.8999 28 6 3.7248 -0.9415 -3.6507 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2489 -1.6317 1.1527 33 1 2.8729 -1.5817 3.4029 34 1 3.2949 1.8722 3.7801 35 1 3.4089 3.0723 5.9059 36 1 5.3095 4.1069 7.8193 37 1 2.1758 -0.5078 7.9671 38 1 2.0595 -1.6841 5.8281 39 1 1.1490 0.5385 -2.5436 40 1 0.5943 -2.3829 -3.6503 41 1 2.0476 -2.8975 -4.5402 42 1 2.0475 -2.8971 -2.7604 43 1 2.0496 0.8081 -4.8999 44 1 2.0489 -0.7332 -5.7898 45 1 0.5955 -0.2186 -4.9001 46 1 4.0880 -1.4554 -2.7608 47 1 4.0878 -1.4553 -4.5410 48 1 4.0885 0.0859 -3.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299555796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:30 Heat of formation + Delta-G solvation = -72.276661 kcal Electronic energy + Delta-G solvation = -28175.106731 eV Core-core repulsion = 24228.663418 eV Total energy + Delta-G solvation = -3946.443312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.78153 -40.97195 -39.23548 -37.71340 -36.38962 -35.78459 -34.81067 -33.40739 -31.50708 -31.30990 -30.28898 -28.23762 -28.18900 -26.82885 -25.57262 -23.35835 -23.04242 -21.88306 -21.44153 -20.58078 -19.73989 -19.25111 -18.56027 -17.50857 -17.22692 -16.97656 -16.60016 -16.13881 -16.00390 -15.75725 -15.61036 -15.12630 -14.87280 -14.62922 -14.51963 -14.46370 -13.96707 -13.87238 -13.79631 -13.43875 -13.22749 -13.12573 -13.01719 -12.97831 -12.95225 -12.75484 -12.67175 -12.47807 -12.34224 -12.10090 -11.93821 -11.85918 -11.49746 -11.21039 -10.86404 -10.72283 -10.64587 -10.19902 -10.09847 -9.43453 -8.98005 -8.66207 -6.20403 0.88807 1.16708 1.37188 1.44511 1.49953 1.54193 1.60502 2.13173 2.19898 2.28747 2.69003 3.35212 3.53948 3.74452 3.92079 3.99050 4.03934 4.13297 4.15254 4.44913 4.49554 4.62534 4.70743 4.73951 4.76589 4.78654 4.88119 4.95684 4.96813 5.01461 5.10983 5.19151 5.19442 5.24042 5.28830 5.33099 5.40131 5.42250 5.46752 5.58737 5.65513 5.78292 6.09512 6.12819 6.19760 6.36838 6.51433 6.67553 6.92019 7.03527 7.10941 7.17334 7.65858 8.23040 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.002034 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.801199 B =13764.567362 C =14090.800683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.103 0.897 4 N -0.720 5.720 5 C 0.698 3.302 6 O -0.619 6.619 7 N -0.657 5.657 8 C 0.012 3.988 9 C -0.087 4.087 10 C -0.197 4.197 11 C 0.080 3.920 12 C -0.503 4.503 13 H 0.082 0.918 14 C 0.046 3.954 15 N -0.804 5.804 16 Si 0.972 3.028 17 H -0.256 1.256 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.231 4.231 21 C -0.092 4.092 22 C 0.521 3.479 23 O -0.557 6.557 24 N -0.706 5.706 25 C 0.164 3.836 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.164 4.164 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.291 0.709 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.415 0.585 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.077 0.923 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -7.432 -24.184 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.121 0.879 4 N -0.378 5.378 5 C 0.399 3.601 6 O -0.499 6.499 7 N -0.305 5.305 8 C -0.081 4.081 9 C -0.107 4.107 10 C -0.217 4.217 11 C 0.077 3.923 12 C -0.531 4.531 13 H 0.100 0.900 14 C -0.172 4.172 15 N -0.428 5.428 16 Si 0.792 3.208 17 H -0.181 1.181 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.251 4.251 21 C -0.112 4.112 22 C 0.306 3.694 23 O -0.436 6.436 24 N -0.359 5.359 25 C 0.079 3.921 26 C -0.218 4.218 27 C -0.207 4.207 28 C -0.222 4.222 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.252 0.748 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.402 -6.969 -24.184 25.970 hybrid contribution 0.277 0.275 0.642 0.751 sum -6.126 -6.694 -23.543 25.231 Atomic orbital electron populations 1.22100 0.91479 1.03374 1.03974 1.20681 0.96555 0.97222 0.82285 0.87945 1.44658 1.71608 1.14319 1.07231 1.16035 0.78285 0.84839 0.80959 1.90888 1.58450 1.15848 1.84738 1.41814 1.67115 1.15449 1.06125 1.16913 1.13791 0.93120 0.84315 1.20447 0.99104 0.94626 0.96526 1.20615 1.09956 0.98838 0.92272 1.17922 0.89394 0.91723 0.93231 1.19722 1.25881 1.09863 0.97629 0.89954 1.26808 0.92216 1.00917 0.97305 1.69974 1.08754 1.28045 1.35993 0.85369 0.80248 0.76754 0.78461 1.18060 1.19179 1.18194 1.20720 1.13181 0.94251 0.96986 1.20375 1.00191 0.99503 0.91106 1.20472 0.79546 0.84106 0.85235 1.90639 1.38669 1.27370 1.86908 1.46036 1.53257 1.32236 1.04345 1.20512 0.93832 0.92958 0.84760 1.22177 1.01318 0.95464 1.02848 1.22057 1.02372 1.00877 0.95357 1.22214 0.95113 1.02046 1.02811 0.92831 0.88086 0.91370 0.75224 0.75242 0.88941 0.89734 0.89783 0.87307 0.85126 0.74796 0.91904 0.90607 0.93077 0.91257 0.89734 0.90649 0.93279 0.90425 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.38 71.98 0.68 -2.01 16 2 C 0.14 3.15 2.98 44.25 0.13 3.28 16 3 H 0.10 2.54 7.58 -2.39 -0.02 2.52 16 4 N -0.72 -19.55 4.96 -461.42 -2.29 -21.84 16 5 C 0.70 25.55 8.34 179.06 1.49 27.04 16 6 O -0.62 -27.87 13.63 -3.97 -0.05 -27.92 16 7 N -0.66 -23.84 5.30 -316.78 -1.68 -25.52 16 8 C 0.01 0.56 6.25 38.57 0.24 0.80 16 9 C -0.09 -4.57 8.59 22.14 0.19 -4.38 16 10 C -0.20 -11.20 8.74 22.48 0.20 -11.00 16 11 C 0.08 4.48 5.57 -21.28 -0.12 4.37 16 12 C -0.50 -27.76 8.94 23.39 0.21 -27.55 16 13 H 0.08 4.34 8.02 -2.91 -0.02 4.31 16 14 C 0.05 2.40 4.77 85.24 0.41 2.81 16 15 N -0.80 -43.34 11.78 21.82 0.26 -43.08 16 16 Si 0.97 38.81 29.66 68.60 2.03 40.84 16 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 C -0.23 -11.46 9.74 22.48 0.22 -11.25 16 21 C -0.09 -4.01 9.90 22.14 0.22 -3.79 16 22 C 0.52 10.41 6.64 87.66 0.58 10.99 16 23 O -0.56 -14.35 12.05 -3.01 -0.04 -14.39 16 24 N -0.71 -9.22 5.00 -422.93 -2.11 -11.33 16 25 C 0.16 1.99 1.06 3.60 0.00 1.99 16 26 C -0.16 -2.14 8.40 71.98 0.60 -1.53 16 27 C -0.15 -0.90 8.59 71.98 0.62 -0.28 16 28 C -0.16 -2.52 8.40 71.98 0.60 -1.91 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.07 7.56 -2.39 -0.02 1.06 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.41 9.85 7.81 -92.71 -0.72 9.13 16 33 H 0.41 11.60 8.84 -92.70 -0.82 10.78 16 34 H 0.09 4.98 6.45 -2.91 -0.02 4.96 16 35 H 0.08 5.03 6.52 -2.91 -0.02 5.01 16 36 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 37 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.41 3.19 7.89 -92.71 -0.73 2.46 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 1.00 6.17 -2.39 -0.01 0.99 16 43 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.05 1.08 6.17 -2.39 -0.01 1.06 16 47 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -73.07 390.67 1.13 -71.95 By element: Atomic # 1 Polarization: 44.99 SS G_CDS: -1.27 Total: 43.72 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 6.28 Total: -12.43 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -5.82 Total: -101.77 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.09 Total: -42.31 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -73.07 1.13 -71.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299555796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.328 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds