Wall clock time and date at job start Tue Mar 31 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47335 * 2 1 4 4 C 1.46490 * 120.00386 * 96.89077 * 3 2 1 5 5 C 1.50704 * 109.47081 * 270.00009 * 4 3 2 6 6 C 1.38228 * 119.61976 * 95.02036 * 5 4 3 7 7 C 1.38621 * 119.16293 * 179.74693 * 6 5 4 8 8 C 1.38670 * 118.42161 * 0.47120 * 7 6 5 9 9 C 1.38187 * 119.16089 * 359.50991 * 8 7 6 10 10 N 1.31850 * 119.62094 * 275.00066 * 5 4 3 11 11 C 1.34781 * 119.99545 * 276.88970 * 3 2 1 12 12 O 1.21354 * 119.99753 * 176.16970 * 11 3 2 13 13 C 1.49450 * 119.99991 * 356.17014 * 11 3 2 14 14 O 1.21348 * 120.00210 * 5.70647 * 13 11 3 15 15 N 1.34781 * 119.99820 * 185.70827 * 13 11 3 16 16 C 1.46493 * 119.99861 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47285 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.46811 * 300.00027 * 17 16 15 19 19 C 1.52999 * 109.46830 * 59.99288 * 17 16 15 20 20 C 1.50693 * 109.47363 * 179.97438 * 17 16 15 21 21 H 1.07999 * 120.00413 * 359.97438 * 20 17 16 22 22 C 1.37880 * 119.99923 * 179.97438 * 20 17 16 23 23 N 1.31513 * 119.99849 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99969 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.46982 * 60.00138 * 24 22 20 26 26 H 1.48505 * 109.46994 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47180 * 299.99921 * 24 22 20 28 28 H 1.09004 * 109.46366 * 60.00461 * 1 2 3 29 29 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47460 * 300.00413 * 1 2 3 31 31 H 1.08997 * 109.47340 * 239.99049 * 2 1 3 32 32 H 1.09006 * 109.46768 * 119.99881 * 2 1 3 33 33 H 1.08998 * 109.47310 * 150.00131 * 4 3 2 34 34 H 1.09004 * 109.47305 * 29.99929 * 4 3 2 35 35 H 1.08007 * 120.41770 * 359.95740 * 6 5 4 36 36 H 1.08003 * 120.78979 * 180.22986 * 7 6 5 37 37 H 1.08003 * 120.42572 * 179.78086 * 8 7 6 38 38 H 1.07997 * 119.61504 * 180.24966 * 9 8 7 39 39 H 0.96996 * 119.99742 * 359.97438 * 15 13 11 40 40 H 1.08999 * 109.47305 * 299.99610 * 16 15 13 41 41 H 1.09001 * 109.47353 * 60.00066 * 16 15 13 42 42 H 1.09003 * 109.47346 * 59.99841 * 18 17 16 43 43 H 1.09000 * 109.46888 * 179.97438 * 18 17 16 44 44 H 1.09005 * 109.46929 * 299.99833 * 18 17 16 45 45 H 1.08999 * 109.46829 * 60.00856 * 19 17 16 46 46 H 1.09003 * 109.46753 * 179.97438 * 19 17 16 47 47 H 1.08993 * 109.47444 * 300.00260 * 19 17 16 48 48 H 0.97002 * 120.00029 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4061 2.0211 1.2594 5 6 1.2091 2.7107 1.8618 6 6 0.4477 2.0538 2.8101 7 6 -0.6481 2.6991 3.3618 8 6 -0.9444 3.9831 2.9299 9 6 -0.1371 4.5764 1.9782 10 7 0.9005 3.9339 1.4784 11 6 2.1110 2.0631 -1.1589 12 8 2.4490 3.2286 -1.1517 13 6 1.7974 1.3840 -2.4527 14 8 1.3604 0.2519 -2.4534 15 7 2.0000 2.0289 -3.6187 16 6 1.6920 1.3634 -4.8869 17 6 2.0096 2.3072 -6.0485 18 6 1.1645 3.5763 -5.9201 19 6 3.4938 2.6773 -6.0137 20 6 1.6935 1.6224 -7.3531 21 1 1.3053 0.6146 -7.3538 22 6 1.8998 2.2825 -8.5459 23 7 2.3720 3.5100 -8.5450 24 14 1.5086 1.4334 -10.1631 25 1 0.0684 1.0728 -10.1971 26 1 1.8155 2.3501 -11.2904 27 1 2.3301 0.2027 -10.2874 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.1897 2.7542 1.0684 34 1 2.7766 1.2653 1.9520 35 1 0.7053 1.0517 3.1199 36 1 -1.2590 2.2119 4.1074 37 1 -1.7928 4.5144 3.3354 38 1 -0.3587 5.5777 1.6396 39 1 2.3489 2.9339 -3.6181 40 1 2.2938 0.4591 -4.9782 41 1 0.6346 1.1002 -4.9118 42 1 1.3936 4.0715 -4.9764 43 1 1.3911 4.2489 -6.7473 44 1 0.1071 3.3126 -5.9447 45 1 4.0958 1.7732 -6.1052 46 1 3.7201 3.3493 -6.8415 47 1 3.7228 3.1724 -5.0702 48 1 2.5169 3.9745 -9.3842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422476796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:33 Heat of formation + Delta-G solvation = -41.996535 kcal Electronic energy + Delta-G solvation = -29227.465423 eV Core-core repulsion = 25282.335155 eV Total energy + Delta-G solvation = -3945.130267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99540 -41.00096 -39.62882 -38.29344 -37.26752 -34.98776 -33.56786 -32.99981 -32.73505 -31.33000 -28.68615 -27.61158 -27.54301 -27.01430 -25.01406 -24.42512 -23.77327 -22.75171 -21.03894 -20.57930 -18.86323 -18.15637 -17.87690 -17.71702 -17.20738 -16.97762 -16.78356 -16.58486 -16.34986 -15.87587 -15.47950 -15.29323 -14.78407 -14.73163 -14.55444 -14.43341 -14.13141 -14.06617 -13.96784 -13.59102 -13.23030 -13.16674 -13.10333 -12.87882 -12.70490 -12.62658 -12.57406 -12.35278 -12.27627 -12.12227 -11.87567 -11.51477 -11.27069 -10.78717 -10.75420 -10.43648 -10.42390 -10.39615 -10.10559 -9.97858 -9.71517 -8.01712 -6.18759 0.09611 0.39334 0.44459 1.40288 1.45953 1.47169 1.53813 2.17188 2.43226 2.55561 2.97663 3.21970 3.34390 3.38624 3.79327 4.02821 4.12369 4.18751 4.26504 4.34180 4.37805 4.41131 4.46693 4.57832 4.64320 4.66318 4.76892 4.78158 4.85969 4.90342 5.01239 5.01959 5.08178 5.15188 5.20336 5.21731 5.28383 5.37619 5.45379 5.51871 5.62666 5.66309 5.81370 5.94800 6.08677 6.17528 6.31441 6.40058 6.74340 6.85903 7.00778 7.14678 7.49289 8.97549 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021611 B = 0.002567 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.330568 B =10904.922495 C =11315.813821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 N -0.573 5.573 4 C 0.160 3.840 5 C 0.085 3.915 6 C -0.152 4.152 7 C -0.080 4.080 8 C -0.168 4.168 9 C 0.072 3.928 10 N -0.503 5.503 11 C 0.504 3.496 12 O -0.529 6.529 13 C 0.495 3.505 14 O -0.532 6.532 15 N -0.685 5.685 16 C 0.146 3.854 17 C 0.052 3.948 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.527 4.527 21 H 0.053 0.947 22 C 0.026 3.974 23 N -0.902 5.902 24 Si 0.949 3.051 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.410 0.590 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -4.680 26.892 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.306 5.306 4 C 0.038 3.962 5 C -0.054 4.054 6 C -0.173 4.173 7 C -0.106 4.106 8 C -0.188 4.188 9 C -0.085 4.085 10 N -0.213 5.213 11 C 0.286 3.714 12 O -0.405 6.405 13 C 0.276 3.724 14 O -0.410 6.410 15 N -0.337 5.337 16 C 0.024 3.976 17 C 0.051 3.949 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.566 4.566 21 H 0.071 0.929 22 C -0.174 4.174 23 N -0.541 5.541 24 Si 0.776 3.224 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.247 0.753 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.501 -4.313 26.110 26.695 hybrid contribution -0.689 0.118 -0.827 1.083 sum -4.191 -4.195 25.283 25.969 Atomic orbital electron populations 1.22038 0.95864 1.02761 1.00432 1.22303 0.94908 0.79852 1.05937 1.47893 1.62764 1.15136 1.04803 1.20657 0.93270 0.98038 0.84216 1.21767 0.97827 0.90870 0.94907 1.22283 0.95786 1.02148 0.97036 1.22022 0.96011 0.94242 0.98314 1.22501 1.01242 0.96941 0.98131 1.23093 0.90785 1.00440 0.94214 1.67518 1.18074 1.10116 1.25560 1.20199 0.79141 0.86379 0.85729 1.90781 1.46194 1.16370 1.87171 1.20337 0.79927 0.86488 0.85682 1.90617 1.45116 1.18097 1.87216 1.46106 1.62857 1.19218 1.05502 1.21507 0.99182 0.95810 0.81128 1.18357 0.93127 0.92135 0.91259 1.21703 0.97617 0.99459 0.99295 1.21701 0.97116 0.99797 0.99509 1.21216 1.43786 1.00403 0.91153 0.92921 1.25522 0.94793 0.95423 1.01656 1.69927 1.45277 1.11918 1.26960 0.85749 0.78586 0.78440 0.79632 1.20102 1.21121 1.19924 0.95914 0.89969 0.92311 0.88465 0.86474 0.89977 0.83905 0.81669 0.81513 0.82277 0.82487 0.75314 0.92490 0.93048 0.95612 0.91736 0.95957 0.95576 0.91802 0.95428 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.73 71.98 0.70 -2.44 16 2 C 0.09 1.76 5.75 86.38 0.50 2.26 16 3 N -0.57 -13.82 2.47 -827.74 -2.05 -15.87 16 4 C 0.16 3.10 5.72 85.64 0.49 3.59 16 5 C 0.09 1.78 6.32 42.55 0.27 2.04 16 6 C -0.15 -2.05 8.40 22.36 0.19 -1.86 16 7 C -0.08 -0.93 10.18 22.46 0.23 -0.70 16 8 C -0.17 -2.40 10.11 22.36 0.23 -2.18 16 9 C 0.07 1.51 11.18 84.67 0.95 2.46 16 10 N -0.50 -13.48 10.27 -183.89 -1.89 -15.37 16 11 C 0.50 16.51 7.67 87.27 0.67 17.18 16 12 O -0.53 -20.07 16.11 -3.26 -0.05 -20.13 16 13 C 0.49 17.76 7.66 87.27 0.67 18.43 16 14 O -0.53 -19.38 11.83 -3.24 -0.04 -19.41 16 15 N -0.69 -26.35 4.95 -464.42 -2.30 -28.65 16 16 C 0.15 6.24 4.50 86.38 0.39 6.63 16 17 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 18 C -0.12 -5.84 8.08 71.98 0.58 -5.26 16 19 C -0.12 -5.78 8.08 71.98 0.58 -5.20 16 20 C -0.53 -27.84 8.01 25.60 0.21 -27.63 16 21 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 22 C 0.03 1.37 5.15 84.66 0.44 1.80 16 23 N -0.90 -49.25 9.35 21.45 0.20 -49.05 16 24 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H 0.02 0.63 7.01 -2.38 -0.02 0.61 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.05 6.72 -2.39 -0.02 1.04 16 31 H 0.10 2.37 5.40 -2.40 -0.01 2.36 16 32 H 0.12 1.21 7.82 -2.38 -0.02 1.19 16 33 H 0.08 1.95 7.48 -2.39 -0.02 1.93 16 34 H 0.14 1.35 7.75 -2.39 -0.02 1.34 16 35 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.41 15.85 5.65 -92.71 -0.52 15.32 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.02 1.09 6.86 -2.39 -0.02 1.08 16 43 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 44 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 47 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 48 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -67.98 385.57 3.40 -64.57 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.45 Total: 27.67 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 7.05 Total: 11.57 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -6.03 Total: -108.94 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.09 Total: -39.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.98 3.40 -64.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422476796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.578 kcal (2) G-P(sol) polarization free energy of solvation -67.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds