Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46919 * 2 1 4 4 C 1.46497 * 119.99698 * 87.11876 * 3 2 1 5 5 C 1.52996 * 109.47543 * 89.99824 * 4 3 2 6 6 C 1.34774 * 120.00134 * 267.10655 * 3 2 1 7 7 O 1.21278 * 120.00285 * 184.89354 * 6 3 2 8 8 C 1.50705 * 120.00164 * 4.90305 * 6 3 2 9 9 H 1.08999 * 109.46891 * 29.54288 * 8 6 3 10 10 N 1.46896 * 109.47672 * 149.54583 * 8 6 3 11 11 C 1.46893 * 111.00134 * 205.00049 * 10 8 6 12 12 C 1.50700 * 109.47006 * 180.02562 * 11 10 8 13 13 O 1.21291 * 120.00310 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00053 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00123 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99810 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31404 * 120.00353 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99580 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47401 * 90.00087 * 19 17 15 21 21 H 1.48501 * 109.46967 * 209.99830 * 19 17 15 22 22 H 1.48499 * 109.47508 * 329.99977 * 19 17 15 23 23 C 1.50704 * 109.46674 * 269.54963 * 8 6 3 24 24 C 1.38232 * 119.99651 * 287.04277 * 23 8 6 25 25 C 1.38240 * 120.00211 * 179.81458 * 24 23 8 26 26 C 1.38242 * 119.99506 * 0.39376 * 25 24 23 27 27 C 1.38240 * 119.99874 * 359.86241 * 26 25 24 28 28 C 1.38226 * 120.00122 * 359.95053 * 27 26 25 29 29 H 1.09007 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47157 * 299.99961 * 1 2 3 31 31 H 1.09004 * 109.47054 * 60.00268 * 1 2 3 32 32 H 1.09005 * 109.46863 * 240.00014 * 2 1 3 33 33 H 1.08997 * 109.47124 * 120.00425 * 2 1 3 34 34 H 1.09002 * 109.46762 * 209.99626 * 4 3 2 35 35 H 1.09004 * 109.46886 * 329.99107 * 4 3 2 36 36 H 1.09006 * 109.47242 * 180.02562 * 5 4 3 37 37 H 1.09002 * 109.46930 * 299.99699 * 5 4 3 38 38 H 1.08996 * 109.47318 * 59.99692 * 5 4 3 39 39 H 1.00904 * 110.99473 * 328.95784 * 10 8 6 40 40 H 1.09001 * 109.47131 * 299.99293 * 11 10 8 41 41 H 1.08999 * 109.47374 * 60.00167 * 11 10 8 42 42 H 0.97003 * 120.00085 * 359.97438 * 14 12 11 43 43 H 0.97001 * 120.00313 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.00149 * 0.02562 * 24 23 8 45 45 H 1.07997 * 120.00715 * 180.23238 * 25 24 23 46 46 H 1.07999 * 119.99653 * 179.83670 * 26 25 24 47 47 H 1.08001 * 119.99780 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.00172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2023 2.0930 1.2671 5 6 3.6246 1.8607 1.7809 6 6 2.2985 1.9970 -1.1657 7 8 2.7860 3.1074 -1.1631 8 6 2.0057 1.3057 -2.4724 9 1 1.1563 0.6344 -2.3460 10 7 1.6883 2.3093 -3.4971 11 6 0.8526 1.7322 -4.5583 12 6 0.5489 2.7887 -5.5891 13 8 0.9853 3.9122 -5.4528 14 7 -0.2086 2.4856 -6.6619 15 6 -0.4853 3.4470 -7.5994 16 1 -0.0960 4.4471 -7.4784 17 6 -1.2658 3.1343 -8.7056 18 7 -1.7390 1.9173 -8.8531 19 14 -1.6422 4.4440 -9.9832 20 1 -0.5907 4.4294 -11.0318 21 1 -2.9629 4.1660 -10.6027 22 1 -1.6723 5.7777 -9.3310 23 6 3.2129 0.5128 -2.9027 24 6 4.3330 1.1652 -3.3828 25 6 5.4418 0.4381 -3.7739 26 6 5.4274 -0.9418 -3.6924 27 6 4.3052 -1.5944 -3.2172 28 6 3.1980 -0.8672 -2.8226 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0421 3.1599 1.1111 35 1 1.4859 1.7214 1.9999 36 1 3.7613 2.3900 2.7240 37 1 3.7847 0.7939 1.9369 38 1 4.3408 2.2323 1.0481 39 1 1.2448 3.1173 -3.0866 40 1 1.3844 0.9064 -5.0309 41 1 -0.0793 1.3654 -4.1279 42 1 -0.5579 1.5873 -6.7707 43 1 -2.2842 1.6991 -9.6251 44 1 4.3431 2.2431 -3.4493 45 1 6.3184 0.9480 -4.1455 46 1 6.2927 -1.5099 -4.0004 47 1 4.2938 -2.6725 -3.1539 48 1 2.3214 -1.3770 -2.4509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507233892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = -37.963035 kcal Electronic energy + Delta-G solvation = -29226.250563 eV Core-core repulsion = 25281.295202 eV Total energy + Delta-G solvation = -3944.955362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66815 -38.85383 -38.17000 -36.44449 -35.38661 -33.85127 -32.46335 -31.36936 -31.09155 -30.81919 -29.76512 -27.76810 -25.51118 -23.99357 -23.72802 -23.17675 -22.47617 -21.18775 -19.45238 -18.93696 -17.92902 -17.39122 -17.04653 -16.68263 -15.82177 -15.57960 -15.19997 -14.93233 -14.81407 -14.43383 -14.20033 -14.11680 -13.91823 -13.83596 -13.41748 -13.32473 -13.20858 -12.92362 -12.76689 -12.65016 -12.57673 -12.27833 -12.13670 -11.93358 -11.53425 -11.48402 -11.44448 -11.24719 -11.07338 -11.01705 -10.92567 -10.37015 -10.19269 -9.90626 -9.48090 -8.91537 -8.84874 -8.67837 -8.44444 -8.13128 -7.93364 -6.39110 -3.79592 1.30040 1.47677 2.53565 2.73140 3.20227 3.28583 3.34879 3.78412 3.93330 4.05098 4.26320 4.49245 4.58457 4.71495 4.81258 4.82496 4.89474 5.01212 5.01799 5.08229 5.11605 5.18344 5.20511 5.25247 5.31817 5.34719 5.46279 5.52457 5.54693 5.68113 5.71557 5.75372 5.85972 5.95094 5.97437 5.99249 6.12018 6.25678 6.35566 6.44585 6.59682 6.66563 7.01186 7.03654 7.24691 7.58057 7.59045 8.08430 8.09191 8.64201 9.20830 9.56841 10.08656 10.78745 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003049 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.503100 B = 9182.221857 C =10052.101391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 N -0.614 5.614 4 C 0.112 3.888 5 C -0.167 4.167 6 C 0.519 3.481 7 O -0.511 6.511 8 C 0.111 3.889 9 H 0.070 0.930 10 N -0.642 5.642 11 C 0.052 3.948 12 C 0.443 3.557 13 O -0.578 6.578 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.076 4.076 24 C -0.070 4.070 25 C -0.125 4.125 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.359 0.641 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.754 -11.738 19.824 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.349 5.349 4 C -0.010 4.010 5 C -0.225 4.225 6 C 0.306 3.694 7 O -0.385 6.385 8 C -0.002 4.002 9 H 0.087 0.913 10 N -0.277 5.277 11 C -0.081 4.081 12 C 0.228 3.772 13 O -0.462 6.462 14 N -0.201 5.201 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.077 4.077 24 C -0.088 4.088 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.181 0.819 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.153 0.847 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.756 -10.493 19.428 23.753 hybrid contribution -1.378 -0.290 -0.374 1.457 sum 7.378 -10.783 19.054 23.103 Atomic orbital electron populations 1.22262 0.95664 1.02607 1.02814 1.21766 0.94586 0.82552 1.03840 1.48023 1.66547 1.14362 1.05983 1.21398 0.96906 0.98304 0.84415 1.22116 0.97390 1.01646 1.01348 1.20532 0.77947 0.86027 0.84918 1.90737 1.41391 1.19513 1.86831 1.20414 0.96390 0.94000 0.89409 0.91258 1.59916 1.50279 1.06859 1.10621 1.21755 0.95210 0.97800 0.93302 1.19698 0.83910 0.89251 0.84346 1.90550 1.55386 1.22422 1.77795 1.41837 1.45105 1.13369 1.19750 1.19711 1.29085 0.93890 1.00040 0.87908 1.25245 0.96894 0.97217 0.98572 1.69609 1.35467 1.18808 1.30531 0.85864 0.77595 0.80624 0.80254 1.20399 1.20969 1.19407 1.19457 0.94810 0.92757 1.00719 1.21172 0.91587 1.01325 0.94706 1.21227 0.98641 0.94137 1.00292 1.21158 0.98222 0.94676 0.99582 1.20999 0.93591 0.99535 1.00308 1.20987 0.98565 0.93082 1.00945 0.91172 0.92126 0.92189 0.89614 0.90232 0.89890 0.90698 0.91738 0.92757 0.91996 0.81875 0.89375 0.93771 0.77497 0.91920 0.84694 0.86076 0.86345 0.86181 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 10.07 37.16 0.37 -0.83 16 2 C 0.10 0.72 5.70 -4.04 -0.02 0.69 16 3 N -0.61 -6.43 2.47 -173.69 -0.43 -6.86 16 4 C 0.11 1.03 6.10 -4.05 -0.02 1.00 16 5 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 6 C 0.52 7.31 6.49 -10.98 -0.07 7.24 16 7 O -0.51 -9.10 16.03 5.56 0.09 -9.01 16 8 C 0.11 1.53 1.87 -70.01 -0.13 1.40 16 9 H 0.07 0.81 5.22 -51.93 -0.27 0.54 16 10 N -0.64 -11.29 5.23 -110.46 -0.58 -11.86 16 11 C 0.05 0.94 5.96 -4.98 -0.03 0.91 16 12 C 0.44 10.72 7.82 -10.98 -0.09 10.64 16 13 O -0.58 -16.21 15.78 5.55 0.09 -16.13 16 14 N -0.56 -14.51 5.29 -10.96 -0.06 -14.56 16 15 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 16 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 19 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.08 -1.02 4.57 -104.62 -0.48 -1.50 16 24 C -0.07 -1.03 9.26 -39.58 -0.37 -1.40 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.13 -1.30 10.05 -39.59 -0.40 -1.70 16 28 C -0.12 -1.28 8.58 -39.59 -0.34 -1.62 16 29 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 7.25 -51.93 -0.38 0.13 16 32 H 0.09 0.65 3.74 -51.93 -0.19 0.46 16 33 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16 35 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.36 6.88 7.75 -39.29 -0.30 6.58 16 40 H 0.09 1.53 8.00 -51.93 -0.42 1.11 16 41 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 42 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.14 2.30 7.94 -52.49 -0.42 1.88 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.00 6.65 -52.49 -0.35 0.65 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -34.01 397.21 -8.62 -42.63 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.19 Total: 15.45 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.23 Total: 2.05 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.34 Total: -57.30 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.18 Total: -25.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.01 -8.62 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507233892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds