Wall clock time and date at job start Tue Mar 31 2020 18:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47294 * 2 1 4 4 C 1.46754 * 111.00140 * 189.99938 * 3 2 1 5 5 C 1.53422 * 108.59681 * 285.42972 * 4 3 2 6 6 H 1.08995 * 109.77967 * 56.37314 * 5 4 3 7 7 C 1.53000 * 109.77678 * 177.12479 * 5 4 3 8 8 N 1.46506 * 109.46992 * 184.99694 * 7 5 4 9 9 C 1.46499 * 119.99936 * 90.00137 * 8 7 5 10 10 C 1.34773 * 119.99969 * 269.72101 * 8 7 5 11 11 O 1.21586 * 120.00012 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99940 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00211 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47426 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00455 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99724 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00211 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47283 * 90.00145 * 18 16 14 20 20 H 1.48498 * 109.47186 * 209.99883 * 18 16 14 21 21 H 1.48500 * 109.47547 * 329.99942 * 18 16 14 22 22 O 1.43146 * 107.89252 * 296.72152 * 5 4 3 23 23 C 1.36151 * 116.66730 * 45.34493 * 22 5 4 24 24 C 1.38771 * 118.74220 * 165.19651 * 23 22 5 25 25 C 1.38184 * 120.20318 * 179.73177 * 24 23 22 26 26 C 1.38247 * 120.02946 * 359.97438 * 25 24 23 27 27 C 1.38070 * 120.11605 * 0.12075 * 26 25 24 28 28 C 1.38969 * 121.38074 * 345.08265 * 23 22 5 29 29 H 1.09001 * 109.47568 * 300.00287 * 1 2 3 30 30 H 1.09000 * 109.47264 * 60.00641 * 1 2 3 31 31 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47191 * 239.99535 * 2 1 3 33 33 H 1.09002 * 109.46748 * 119.99281 * 2 1 3 34 34 H 1.08992 * 109.61581 * 165.69499 * 4 3 2 35 35 H 1.09000 * 109.76370 * 45.25193 * 4 3 2 36 36 H 1.09000 * 109.46884 * 65.00310 * 7 5 4 37 37 H 1.09000 * 109.46955 * 304.99625 * 7 5 4 38 38 H 1.09003 * 109.47269 * 89.99349 * 9 8 7 39 39 H 1.08994 * 109.47173 * 210.00167 * 9 8 7 40 40 H 1.09005 * 109.47077 * 330.00338 * 9 8 7 41 41 H 0.97004 * 120.00041 * 359.97438 * 12 10 8 42 42 H 1.08998 * 109.47182 * 299.99924 * 13 12 10 43 43 H 1.09001 * 109.47115 * 59.99869 * 13 12 10 44 44 H 0.96993 * 120.00031 * 179.97438 * 17 16 14 45 45 H 1.08001 * 119.90064 * 359.71524 * 24 23 22 46 46 H 1.08001 * 119.98398 * 180.02562 * 25 24 23 47 47 H 1.07998 * 119.94553 * 180.10841 * 26 25 24 48 48 H 1.08004 * 119.87819 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4671 1.4311 -0.2379 5 6 4.1874 0.9793 1.0391 6 1 3.8398 -0.0127 1.3274 7 6 5.6980 0.9486 0.7981 8 7 6.3701 0.4036 1.9803 9 6 6.6056 -1.0383 2.0895 10 6 6.7769 1.2292 2.9648 11 8 6.5856 2.4264 2.8720 12 7 7.3957 0.7279 4.0521 13 6 7.8374 1.6253 5.1225 14 6 8.4942 0.8202 6.2140 15 1 8.5750 -0.2527 6.1196 16 6 8.9930 1.4532 7.3327 17 7 8.8951 2.7597 7.4475 18 14 9.8077 0.4553 8.6853 19 1 11.2620 0.3396 8.4076 20 1 9.6057 1.1334 9.9909 21 1 9.2035 -0.9003 8.7329 22 8 3.8810 1.9204 2.0733 23 6 2.5780 2.2977 2.1897 24 6 2.1729 2.9502 3.3455 25 6 0.8589 3.3515 3.4931 26 6 -0.0571 3.1040 2.4876 27 6 0.3376 2.4536 1.3355 28 6 1.6583 2.0444 1.1792 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 3.7650 2.4499 -0.4851 35 1 3.7269 0.7642 -1.0600 36 1 6.0566 1.9607 0.6106 37 1 5.9154 0.3201 -0.0655 38 1 7.5734 -1.2826 1.6516 39 1 6.5981 -1.3291 3.1399 40 1 5.8203 -1.5759 1.5579 41 1 7.5480 -0.2272 4.1262 42 1 8.5511 2.3451 4.7218 43 1 6.9768 2.1555 5.5303 44 1 9.2456 3.2051 8.2346 45 1 2.8868 3.1447 4.1323 46 1 0.5475 3.8594 4.3939 47 1 -1.0834 3.4198 2.6036 48 1 -0.3813 2.2619 0.5526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787360370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:28 Heat of formation + Delta-G solvation = -14.730953 kcal Electronic energy + Delta-G solvation = -29550.869525 eV Core-core repulsion = 25606.921582 eV Total energy + Delta-G solvation = -3943.947943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33157 -39.38412 -37.59519 -36.89920 -35.21214 -34.11999 -32.48136 -31.79800 -30.97139 -30.43999 -28.44496 -27.13252 -26.48237 -24.87046 -23.58466 -22.97521 -22.43325 -22.00593 -19.88591 -19.27229 -18.17129 -17.93023 -16.83895 -16.47940 -15.94682 -15.88375 -15.38524 -15.30860 -14.94297 -14.89790 -14.52619 -14.24162 -14.08944 -13.56646 -13.41786 -13.11943 -13.08671 -12.92559 -12.65686 -12.43459 -12.37634 -12.16704 -11.98937 -11.91618 -11.69041 -11.67111 -11.55232 -11.13545 -10.99638 -10.92358 -10.85957 -10.77402 -10.25472 -9.49357 -9.32683 -9.22920 -8.68071 -8.45219 -8.31359 -7.94557 -7.67347 -6.11837 -4.18177 1.28359 1.45015 3.10046 3.26282 3.28850 3.32787 3.35461 3.41517 3.75785 4.01328 4.33404 4.40648 4.59590 4.68779 4.78034 4.81823 4.89392 4.93427 5.03142 5.09125 5.15884 5.16366 5.19884 5.24033 5.33038 5.33837 5.49030 5.53382 5.56682 5.58275 5.67759 5.73345 5.86005 5.87870 5.99639 6.20397 6.23230 6.50363 6.61276 6.72666 6.75515 7.01943 7.14374 7.55945 7.56811 7.60080 7.63548 7.90302 8.06483 8.80628 8.97198 9.39466 9.54292 10.98453 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.002964 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.217024 B = 9445.105535 C =10483.664703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.050 3.950 3 N -0.485 5.485 4 C 0.023 3.977 5 C 0.035 3.965 6 H 0.069 0.931 7 C 0.147 3.853 8 N -0.643 5.643 9 C 0.083 3.917 10 C 0.696 3.304 11 O -0.581 6.581 12 N -0.730 5.730 13 C 0.268 3.732 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.274 6.274 23 C 0.099 3.901 24 C -0.132 4.132 25 C -0.096 4.096 26 C -0.151 4.151 27 C -0.088 4.088 28 C 0.015 3.985 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.384 0.616 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.265 0.735 45 H 0.134 0.866 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.643 -7.664 -16.975 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.075 4.075 3 N -0.202 5.202 4 C -0.106 4.106 5 C -0.025 4.025 6 H 0.087 0.913 7 C 0.022 3.978 8 N -0.382 5.382 9 C -0.061 4.061 10 C 0.397 3.603 11 O -0.458 6.458 12 N -0.384 5.384 13 C 0.147 3.853 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 O -0.186 6.186 23 C 0.051 3.949 24 C -0.151 4.151 25 C -0.114 4.114 26 C -0.170 4.170 27 C -0.108 4.108 28 C -0.081 4.081 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.218 0.782 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.152 0.848 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.748 -6.331 -17.177 24.812 hybrid contribution 0.851 -1.516 1.285 2.162 sum -15.897 -7.848 -15.892 23.809 Atomic orbital electron populations 1.22126 0.94438 1.02004 1.03181 1.22241 0.96891 0.87259 1.01106 1.59351 1.13348 1.15393 1.32084 1.22940 0.85914 1.04457 0.97246 1.23653 0.98270 0.91891 0.88657 0.91301 1.21147 0.87557 1.01912 0.87211 1.46994 1.63742 1.06521 1.20941 1.21644 1.00758 0.81162 1.02543 1.16032 0.78993 0.85069 0.80176 1.90886 1.62077 1.13296 1.79583 1.45833 1.61399 1.11214 1.19955 1.18943 0.94801 0.88924 0.82628 1.21220 1.39373 0.93802 1.03513 0.92116 1.24940 0.95855 0.94990 0.98229 1.69982 1.45184 1.07975 1.29100 0.86430 0.79625 0.79933 0.80985 1.20501 1.21017 1.19813 1.86671 1.21269 1.58326 1.52376 1.19218 0.84724 0.97792 0.93153 1.20619 0.96659 1.01420 0.96373 1.20953 0.92230 0.99120 0.99105 1.20908 0.99742 1.01872 0.94437 1.20907 0.94102 0.97658 0.98087 1.18658 0.94797 1.05197 0.89497 0.91203 0.91694 0.92098 0.90108 0.94373 0.88523 0.88434 0.88588 0.88995 0.92910 0.91226 0.91874 0.78188 0.95862 0.95829 0.92499 0.84842 0.85485 0.85932 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.79 37.16 0.33 -0.90 16 2 C 0.05 0.45 5.32 -3.83 -0.02 0.43 16 3 N -0.48 -5.35 4.67 -170.83 -0.80 -6.15 16 4 C 0.02 0.24 5.32 -3.69 -0.02 0.22 16 5 C 0.04 0.46 3.06 -26.51 -0.08 0.37 16 6 H 0.07 0.85 6.91 -51.93 -0.36 0.50 16 7 C 0.15 1.88 5.16 -4.04 -0.02 1.86 16 8 N -0.64 -10.05 2.86 -187.35 -0.54 -10.58 16 9 C 0.08 0.94 10.20 59.85 0.61 1.55 16 10 C 0.70 15.00 7.96 -86.92 -0.69 14.31 16 11 O -0.58 -14.92 15.18 -0.47 -0.01 -14.93 16 12 N -0.73 -16.35 5.42 -66.42 -0.36 -16.71 16 13 C 0.27 7.39 5.43 -5.20 -0.03 7.37 16 14 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.88 -26.54 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 O -0.27 -4.81 8.97 -25.98 -0.23 -5.04 16 23 C 0.10 1.58 6.47 -39.11 -0.25 1.33 16 24 C -0.13 -2.04 9.94 -39.40 -0.39 -2.43 16 25 C -0.10 -1.18 10.04 -39.60 -0.40 -1.58 16 26 C -0.15 -1.65 10.03 -39.64 -0.40 -2.05 16 27 C -0.09 -1.00 7.54 -39.31 -0.30 -1.30 16 28 C 0.01 0.19 5.06 -83.59 -0.42 -0.23 16 29 H 0.07 0.60 5.13 -51.93 -0.27 0.34 16 30 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.56 7.88 -51.93 -0.41 0.15 16 33 H 0.04 0.38 7.07 -51.93 -0.37 0.01 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.70 7.85 -51.93 -0.41 0.29 16 36 H 0.10 1.45 7.41 -51.93 -0.38 1.06 16 37 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 40 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.38 7.46 6.05 -40.82 -0.25 7.21 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.13 1.23 6.36 -52.48 -0.33 0.89 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -35.48 382.36 -10.24 -45.72 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.28 Total: 6.32 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.50 Total: 5.31 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.96 Total: -59.25 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.24 Total: -19.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.48 -10.24 -45.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.990 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds