Wall clock time and date at job start Tue Mar 31 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47380 * 2 1 4 4 C 1.46494 * 119.99891 * 269.99865 * 3 2 1 5 5 C 1.53001 * 109.47221 * 269.99775 * 4 3 2 6 6 C 1.34778 * 119.99753 * 89.99436 * 3 2 1 7 7 O 1.21279 * 120.00436 * 0.02562 * 6 3 2 8 8 C 1.50707 * 119.99602 * 180.02562 * 6 3 2 9 9 C 1.52993 * 109.46836 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47176 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47454 * 180.02562 * 10 9 8 12 12 O 1.21270 * 119.99958 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00012 * 179.97438 * 11 10 9 14 14 C 1.39269 * 119.99964 * 185.57631 * 13 11 10 15 15 C 1.39677 * 119.57439 * 18.84009 * 14 13 11 16 16 C 1.38648 * 119.49539 * 180.02562 * 15 14 13 17 17 C 1.38350 * 118.67018 * 359.74722 * 16 15 14 18 18 C 1.40580 * 119.12988 * 0.49956 * 17 16 15 19 19 C 1.41334 * 119.78852 * 179.76636 * 18 17 16 20 20 H 1.08006 * 120.00068 * 8.66345 * 19 18 17 21 21 C 1.40023 * 120.00186 * 188.65792 * 19 18 17 22 22 N 1.30745 * 120.00258 * 195.97429 * 21 19 18 23 23 Si 1.86800 * 119.99570 * 15.97840 * 21 19 18 24 24 H 1.48499 * 109.47452 * 269.99427 * 23 21 19 25 25 H 1.48495 * 109.47573 * 30.00071 * 23 21 19 26 26 H 1.48507 * 109.47135 * 149.99717 * 23 21 19 27 27 N 1.31903 * 119.57571 * 198.86332 * 14 13 11 28 28 H 1.09005 * 109.46660 * 60.00080 * 1 2 3 29 29 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47120 * 300.00414 * 1 2 3 31 31 H 1.08999 * 109.47120 * 239.99586 * 2 1 3 32 32 H 1.09005 * 109.46660 * 119.99920 * 2 1 3 33 33 H 1.09000 * 109.47405 * 29.99862 * 4 3 2 34 34 H 1.09007 * 109.47168 * 149.99920 * 4 3 2 35 35 H 1.09007 * 109.46932 * 60.00000 * 5 4 3 36 36 H 1.08997 * 109.47101 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47003 * 300.00333 * 5 4 3 38 38 H 1.08992 * 109.46845 * 59.99913 * 8 6 3 39 39 H 1.08999 * 109.46689 * 300.00402 * 8 6 3 40 40 H 1.08994 * 109.47613 * 59.99584 * 9 8 6 41 41 H 1.09003 * 109.47124 * 299.99882 * 9 8 6 42 42 H 1.08994 * 109.47350 * 59.99226 * 10 9 8 43 43 H 1.09003 * 109.46836 * 299.99861 * 10 9 8 44 44 H 0.96998 * 120.00306 * 5.58151 * 13 11 10 45 45 H 1.08002 * 120.24734 * 0.02562 * 15 14 13 46 46 H 1.08000 * 120.66569 * 180.02562 * 16 15 14 47 47 H 1.07999 * 120.43419 * 180.24614 * 17 16 15 48 48 H 0.96992 * 119.99715 * 354.93531 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7103 6 6 2.2429 2.0165 1.1672 7 8 2.0411 1.4447 2.2176 8 6 2.7448 3.4376 1.1672 9 6 2.9154 3.9181 2.6096 10 6 3.4243 5.3610 2.6097 11 6 3.5929 5.8342 4.0305 12 8 3.3314 5.0908 4.9522 13 7 4.0344 7.0836 4.2767 14 6 4.3012 7.4828 5.5840 15 6 4.4958 6.5167 6.5738 16 6 4.7607 6.9160 7.8748 17 6 4.8296 8.2696 8.1527 18 6 4.6192 9.1930 7.1139 19 6 4.6814 10.5791 7.3832 20 1 5.0259 10.9272 8.3458 21 6 4.2965 11.5009 6.4020 22 7 4.6373 12.7580 6.5164 23 14 3.2960 10.9346 4.9297 24 1 4.2131 10.5282 3.8347 25 1 2.4497 9.7790 5.3211 26 1 2.4297 12.0468 4.4626 27 7 4.3662 8.7685 5.8717 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.8746 0.7620 -1.8406 36 1 3.8892 2.3447 -2.6545 37 1 4.3884 2.2154 -0.9506 38 1 2.0266 4.0765 0.6535 39 1 3.7049 3.4837 0.6532 40 1 3.6337 3.2791 3.1230 41 1 1.9555 3.8718 3.1240 42 1 2.7056 5.9998 2.0964 43 1 4.3841 5.4077 2.0952 44 1 4.1664 7.7047 3.5435 45 1 4.4404 5.4666 6.3274 46 1 4.9148 6.1850 8.6548 47 1 5.0382 8.6122 9.1554 48 1 5.0926 13.0662 7.3155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:57 Heat of formation + Delta-G solvation = -60.470573 kcal Electronic energy + Delta-G solvation = -27827.910685 eV Core-core repulsion = 23881.979323 eV Total energy + Delta-G solvation = -3945.931362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.42422 -40.02523 -38.14796 -36.58624 -34.75987 -34.35266 -33.47978 -32.53625 -31.04742 -30.26232 -29.67403 -28.24947 -25.34554 -24.31668 -23.99656 -22.61612 -21.74709 -21.16392 -19.80207 -19.18326 -18.33660 -17.58884 -17.06548 -16.83319 -16.37432 -16.15742 -15.48230 -15.00576 -14.54956 -14.53182 -14.33425 -14.24751 -14.00901 -13.72550 -13.58416 -13.16845 -13.06484 -12.94624 -12.55054 -12.53013 -12.34834 -12.20773 -12.08228 -12.02348 -11.83310 -11.65880 -11.51911 -11.34701 -11.13629 -10.88807 -10.82602 -10.30749 -10.01235 -9.96291 -9.72016 -9.15441 -9.08349 -9.07085 -8.49290 -7.90040 -7.38624 -7.26355 -4.74244 2.25239 2.39521 2.60264 2.69344 3.09280 3.32999 3.47281 3.61452 3.90426 4.16116 4.33703 4.39284 4.60423 4.61324 4.62922 4.70798 4.75691 4.86122 4.89612 4.96623 5.03205 5.15402 5.19881 5.25681 5.26515 5.38497 5.39220 5.47151 5.56495 5.59337 5.68609 5.81882 5.90540 6.00509 6.12634 6.17438 6.30419 6.50571 6.55951 6.60919 7.02798 7.17690 7.23715 7.45251 7.61151 7.65356 7.81267 7.92997 8.13993 8.32617 8.49942 8.68090 9.46087 9.98491 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.002162 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.828226 B =12949.941196 C =13731.475709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.619 5.619 4 C 0.103 3.897 5 C -0.174 4.174 6 C 0.513 3.487 7 O -0.531 6.531 8 C -0.140 4.140 9 C -0.090 4.090 10 C -0.138 4.138 11 C 0.512 3.488 12 O -0.510 6.510 13 N -0.657 5.657 14 C 0.382 3.618 15 C -0.310 4.310 16 C -0.037 4.037 17 C -0.278 4.278 18 C 0.274 3.726 19 C -0.482 4.482 20 H 0.083 0.917 21 C 0.049 3.951 22 N -0.805 5.805 23 Si 1.144 2.856 24 H -0.288 1.288 25 H -0.280 1.280 26 H -0.327 1.327 27 N -0.595 5.595 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.407 0.593 45 H 0.138 0.862 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -19.080 -20.414 28.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.354 5.354 4 C -0.020 4.020 5 C -0.232 4.232 6 C 0.302 3.698 7 O -0.406 6.406 8 C -0.180 4.180 9 C -0.128 4.128 10 C -0.179 4.179 11 C 0.299 3.701 12 O -0.385 6.385 13 N -0.302 5.302 14 C 0.151 3.849 15 C -0.335 4.335 16 C -0.061 4.061 17 C -0.301 4.301 18 C 0.150 3.850 19 C -0.514 4.514 20 H 0.101 0.899 21 C -0.173 4.173 22 N -0.426 5.426 23 Si 0.977 3.023 24 H -0.215 1.215 25 H -0.208 1.208 26 H -0.260 1.260 27 N -0.320 5.320 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.242 0.758 45 H 0.156 0.844 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.074 -18.760 -21.156 28.727 hybrid contribution 1.073 -0.561 1.758 2.135 sum -4.001 -19.321 -19.398 27.669 Atomic orbital electron populations 1.22127 0.95895 1.02224 1.02341 1.21392 0.94393 0.82442 1.03005 1.48109 1.66709 1.14404 1.06175 1.21585 0.96950 0.97982 0.85447 1.22235 0.96620 1.02495 1.01849 1.20796 0.77086 0.88864 0.83089 1.90740 1.51083 1.67887 1.30903 1.21766 1.02939 0.93187 1.00132 1.21091 1.03956 0.93640 0.94138 1.21682 1.03918 0.98405 0.93867 1.20632 0.76610 0.81104 0.91790 1.90652 1.47564 1.54605 1.45634 1.43354 1.64772 1.14159 1.07940 1.18124 0.93217 0.89894 0.83677 1.21537 1.18758 0.99969 0.93211 1.20927 0.94586 0.95170 0.95445 1.21611 1.15990 0.93159 0.99303 1.18187 0.87601 0.93917 0.85299 1.20648 1.38536 0.89971 1.02263 0.89866 1.27658 0.93822 0.92588 1.03251 1.70613 1.27010 1.17344 1.27681 0.82129 0.75313 0.71935 0.72916 1.21501 1.20755 1.25955 1.66182 1.29043 1.13991 1.22801 0.92704 0.91644 0.92092 0.90801 0.89876 0.90330 0.89969 0.92331 0.91269 0.92120 0.88746 0.88748 0.90213 0.90214 0.88577 0.88522 0.75821 0.84413 0.87676 0.87746 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.11 0.77 6.13 -4.04 -0.02 0.74 16 3 N -0.62 -4.59 2.47 -173.68 -0.43 -5.02 16 4 C 0.10 0.43 5.93 -4.04 -0.02 0.41 16 5 C -0.17 -0.66 10.24 37.16 0.38 -0.27 16 6 C 0.51 5.29 7.67 -10.98 -0.08 5.21 16 7 O -0.53 -7.90 15.56 5.56 0.09 -7.82 16 8 C -0.14 -1.08 4.25 -27.88 -0.12 -1.20 16 9 C -0.09 -1.00 3.79 -26.74 -0.10 -1.10 16 10 C -0.14 -1.42 5.70 -27.88 -0.16 -1.58 16 11 C 0.51 8.38 7.67 -10.99 -0.08 8.29 16 12 O -0.51 -10.29 12.78 5.57 0.07 -10.22 16 13 N -0.66 -12.03 5.41 -11.40 -0.06 -12.09 16 14 C 0.38 8.89 7.51 -154.98 -1.16 7.73 16 15 C -0.31 -7.20 8.83 -38.89 -0.34 -7.54 16 16 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 17 C -0.28 -6.81 9.83 -38.66 -0.38 -7.19 16 18 C 0.27 7.32 6.27 -85.00 -0.53 6.79 16 19 C -0.48 -13.25 9.51 -37.74 -0.36 -13.60 16 20 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 21 C 0.05 1.32 5.51 -17.35 -0.10 1.22 16 22 N -0.80 -21.83 13.65 55.55 0.76 -21.08 16 23 Si 1.14 27.53 25.93 -169.99 -4.41 23.12 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.96 6.55 56.52 0.37 -6.59 16 26 H -0.33 -7.72 7.11 56.52 0.40 -7.31 16 27 N -0.60 -15.23 5.07 -10.25 -0.05 -15.29 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 33 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.08 0.26 6.44 -51.92 -0.33 -0.07 16 35 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.28 7.22 -51.93 -0.38 -0.10 16 38 H 0.09 0.52 7.40 -51.93 -0.38 0.14 16 39 H 0.09 0.53 7.19 -51.93 -0.37 0.15 16 40 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 41 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.41 6.32 8.83 -40.82 -0.36 5.96 16 45 H 0.14 3.15 5.33 -52.50 -0.28 2.87 16 46 H 0.11 2.05 8.06 -52.49 -0.42 1.62 16 47 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 48 H 0.28 7.39 8.72 -40.82 -0.36 7.03 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -34.81 392.86 -8.80 -43.62 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.58 Total: 2.91 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.11 Total: -4.06 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.22 Total: -53.47 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.16 Total: -18.04 kcal Atomic # 14 Polarization: 27.53 SS G_CDS: -4.41 Total: 23.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.81 -8.80 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.853 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds