Wall clock time and date at job start Tue Mar 31 2020 18:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47583 * 2 1 4 4 C 1.34775 * 119.99511 * 83.48034 * 3 2 1 5 5 O 1.21618 * 119.99358 * 184.55445 * 4 3 2 6 6 C 1.47412 * 120.00683 * 4.27803 * 4 3 2 7 7 C 1.36095 * 126.45286 * 174.28153 * 6 4 3 8 8 O 1.34258 * 106.95061 * 180.02562 * 7 6 4 9 9 C 1.34053 * 108.22571 * 0.02562 * 8 7 6 10 10 C 1.50700 * 125.37412 * 179.97438 * 9 8 7 11 11 C 1.54269 * 110.03421 * 57.19471 * 10 9 8 12 12 C 1.54894 * 104.19431 * 217.10607 * 11 10 9 13 13 C 1.54888 * 102.74898 * 37.93757 * 12 11 10 14 14 C 1.53873 * 110.03586 * 300.02404 * 10 9 8 15 15 N 1.29932 * 109.24335 * 359.72134 * 9 8 7 16 16 C 1.46494 * 120.00032 * 263.48379 * 3 2 1 17 17 C 1.53948 * 113.74020 * 223.71961 * 16 3 2 18 18 N 1.47818 * 86.03460 * 222.08065 * 17 16 3 19 19 C 1.36932 * 134.45737 * 204.63872 * 18 17 16 20 20 H 1.08003 * 120.00212 * 184.74159 * 19 18 17 21 21 C 1.38810 * 120.00211 * 4.75131 * 19 18 17 22 22 N 1.31616 * 119.99887 * 5.17157 * 21 19 18 23 23 Si 1.86801 * 120.00248 * 185.17697 * 21 19 18 24 24 H 1.48500 * 109.47332 * 94.99453 * 23 21 19 25 25 H 1.48497 * 109.46855 * 214.99404 * 23 21 19 26 26 H 1.48504 * 109.47075 * 334.99131 * 23 21 19 27 27 C 1.47592 * 91.04932 * 24.54817 * 18 17 16 28 28 H 1.08997 * 109.46961 * 300.00276 * 1 2 3 29 29 H 1.09002 * 109.46747 * 59.99502 * 1 2 3 30 30 H 1.08999 * 109.47470 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46961 * 239.99724 * 2 1 3 32 32 H 1.09002 * 109.46747 * 120.00498 * 2 1 3 33 33 H 1.07996 * 126.52068 * 0.02562 * 7 6 4 34 34 H 1.09001 * 110.01630 * 178.62980 * 10 9 8 35 35 H 1.09001 * 110.48098 * 335.77716 * 11 10 9 36 36 H 1.08992 * 110.48831 * 98.42418 * 11 10 9 37 37 H 1.09001 * 110.74937 * 279.62469 * 12 11 10 38 38 H 1.08996 * 110.91767 * 156.32554 * 12 11 10 39 39 H 1.09002 * 110.48669 * 203.38051 * 13 12 11 40 40 H 1.08996 * 110.60034 * 80.79564 * 13 12 11 41 41 H 1.09001 * 110.03316 * 238.57435 * 14 10 9 42 42 H 1.09003 * 110.02751 * 359.97438 * 14 10 9 43 43 H 1.09005 * 112.94507 * 355.30396 * 16 3 2 44 44 H 1.09000 * 113.77045 * 336.34175 * 17 16 3 45 45 H 1.08996 * 113.76943 * 107.74865 * 17 16 3 46 46 H 0.97003 * 120.00528 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.76264 * 221.15310 * 27 18 17 48 48 H 1.08999 * 113.76861 * 89.75390 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1182 2.0606 1.1597 5 8 2.4442 3.2322 1.1518 6 6 1.8262 1.3854 2.4371 7 6 1.9883 1.9076 3.6834 8 8 1.6062 0.9622 4.5567 9 6 1.2184 -0.1173 3.8630 10 6 0.7154 -1.4052 4.4625 11 6 -0.5078 -1.1278 5.3607 12 6 -0.3394 -2.1106 6.5459 13 6 1.1907 -2.0978 6.7859 14 6 1.7953 -2.0220 5.3687 15 7 1.3397 0.1241 2.5921 16 6 2.3984 2.0237 -1.2605 17 6 3.7111 2.8238 -1.1773 18 7 3.0152 3.8521 -1.9793 19 6 3.4246 4.8464 -2.8272 20 1 2.7019 5.5321 -3.2443 21 6 4.7685 4.9730 -3.1508 22 7 5.6349 4.0781 -2.7256 23 14 5.3474 6.4135 -4.1897 24 1 5.8232 7.5046 -3.3019 25 1 6.4582 5.9730 -5.0715 26 1 4.2212 6.9079 -5.0219 27 6 1.7027 3.3757 -1.5014 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3546 2.8947 3.9239 34 1 0.4473 -2.1053 3.6713 35 1 -0.4948 -0.0970 5.7151 36 1 -1.4319 -1.3352 4.8214 37 1 -0.6789 -3.1092 6.2708 38 1 -0.8715 -1.7524 7.4271 39 1 1.5060 -3.0132 7.2866 40 1 1.4799 -1.2250 7.3712 41 1 2.0508 -3.0218 5.0177 42 1 2.6834 -1.3900 5.3744 43 1 2.3503 1.3472 -2.1138 44 1 3.9635 3.1501 -0.1684 45 1 4.5465 2.3524 -1.6948 46 1 6.5741 4.1667 -2.9514 47 1 0.9377 3.3440 -2.2772 48 1 1.3639 3.8644 -0.5878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957056318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:39 Heat of formation + Delta-G solvation = 32.178563 kcal Electronic energy + Delta-G solvation = -29364.745543 eV Core-core repulsion = 25422.831750 eV Total energy + Delta-G solvation = -3941.913794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.52111 -41.44595 -38.98873 -38.60970 -36.88771 -35.63153 -34.12183 -32.27156 -31.24842 -29.62089 -29.49168 -28.91187 -26.59875 -26.28893 -24.59701 -23.78096 -23.46309 -22.07394 -21.50969 -20.99277 -19.88479 -18.79143 -18.33393 -17.90210 -17.55441 -17.22411 -16.90458 -16.60166 -16.29706 -16.16812 -15.74132 -15.26609 -14.91136 -14.68123 -14.45133 -14.43076 -14.23473 -14.10389 -13.70539 -13.44957 -12.98708 -12.88646 -12.85155 -12.72961 -12.56876 -12.44734 -12.37128 -12.03485 -12.00028 -11.93875 -11.90808 -11.85820 -11.64784 -11.55128 -11.41107 -11.36712 -10.97720 -10.68596 -10.06019 -9.49954 -8.89522 -7.90187 -5.25930 0.06883 0.96876 1.42328 1.46265 1.53953 1.55210 1.90723 2.21689 2.47643 2.73670 3.26137 3.47069 3.53013 3.61453 3.67387 3.83317 3.86841 4.05234 4.18601 4.26096 4.48060 4.49443 4.50575 4.53828 4.56200 4.57025 4.58300 4.70941 4.72043 4.81467 4.82074 4.84975 4.98021 4.99185 4.99981 5.10638 5.20053 5.23209 5.28126 5.30457 5.34296 5.36704 5.47572 5.50927 5.52859 5.86245 5.91555 6.34569 6.54457 6.89210 7.12932 7.58141 8.55831 9.25544 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.002496 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.386048 B =11215.496555 C =11581.437759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 N -0.584 5.584 4 C 0.586 3.414 5 O -0.561 6.561 6 C -0.086 4.086 7 C 0.017 3.983 8 O -0.191 6.191 9 C 0.207 3.793 10 C 0.004 3.996 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.124 4.124 14 C -0.119 4.119 15 N -0.460 5.460 16 C 0.124 3.876 17 C 0.149 3.851 18 N -0.631 5.631 19 C -0.235 4.235 20 H 0.082 0.918 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.984 3.016 24 H -0.291 1.291 25 H -0.289 1.289 26 H -0.264 1.264 27 C 0.115 3.885 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.244 0.756 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.024 0.976 45 H 0.046 0.954 46 H 0.249 0.751 47 H 0.055 0.945 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 -19.334 20.166 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 N -0.315 5.315 4 C 0.374 3.626 5 O -0.440 6.440 6 C -0.204 4.204 7 C -0.057 4.057 8 O -0.077 6.077 9 C -0.002 4.002 10 C -0.015 4.015 11 C -0.157 4.157 12 C -0.155 4.155 13 C -0.162 4.162 14 C -0.158 4.158 15 N -0.189 5.189 16 C 0.020 3.980 17 C 0.022 3.978 18 N -0.358 5.358 19 C -0.363 4.363 20 H 0.100 0.900 21 C -0.263 4.263 22 N -0.601 5.601 23 Si 0.812 3.188 24 H -0.218 1.218 25 H -0.215 1.215 26 H -0.188 1.188 27 C -0.011 4.011 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.260 0.740 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.144 0.856 44 H 0.041 0.959 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.836 -18.990 19.454 30.504 hybrid contribution 1.029 1.931 -0.191 2.197 sum -12.807 -17.059 19.263 28.741 Atomic orbital electron populations 1.21926 0.94727 1.02840 1.00563 1.22174 0.95632 0.80115 1.04749 1.47949 1.62879 1.15417 1.05210 1.17248 0.77226 0.85156 0.82924 1.90870 1.49155 1.16899 1.87103 1.21600 1.10590 0.93525 0.94734 1.25560 0.98534 0.95106 0.86531 1.84383 1.62413 1.22125 1.38811 1.27129 0.97185 0.90796 0.85130 1.20755 0.96273 0.85409 0.99110 1.22500 0.96438 1.00397 0.96403 1.22495 0.95808 0.99770 0.97440 1.22390 0.95664 1.02533 0.95603 1.22270 0.96633 1.01724 0.95128 1.70941 1.17681 1.13263 1.17042 1.23510 0.95904 0.93001 0.85629 1.22609 0.94260 0.87597 0.93302 1.46015 1.03032 1.37669 1.49076 1.19414 0.92776 1.05891 1.18205 0.90021 1.25714 0.95902 1.01876 1.02762 1.70040 1.01892 1.36851 1.51270 0.84975 0.77897 0.78176 0.77765 1.21827 1.21494 1.18823 1.22979 0.89435 0.92141 0.96548 0.94009 0.93842 0.89398 0.89783 0.87182 0.74011 0.85117 0.92123 0.89565 0.89626 0.90519 0.89944 0.92118 0.88863 0.92767 0.85579 0.95861 0.93528 0.94238 0.92676 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.73 71.98 0.70 -2.51 16 2 C 0.09 2.48 5.74 86.38 0.50 2.97 16 3 N -0.58 -20.75 2.75 -807.37 -2.22 -22.97 16 4 C 0.59 22.41 7.03 86.66 0.61 23.02 16 5 O -0.56 -26.28 12.60 -4.09 -0.05 -26.33 16 6 C -0.09 -2.58 6.48 40.41 0.26 -2.32 16 7 C 0.02 0.42 11.95 67.32 0.80 1.22 16 8 O -0.19 -4.11 10.55 0.35 0.00 -4.11 16 9 C 0.21 4.09 6.50 88.39 0.57 4.66 16 10 C 0.00 0.04 3.44 -10.82 -0.04 0.01 16 11 C -0.12 -1.14 6.35 31.67 0.20 -0.94 16 12 C -0.12 -0.75 6.91 31.89 0.22 -0.53 16 13 C -0.12 -0.97 6.83 31.67 0.22 -0.75 16 14 C -0.12 -1.20 6.45 31.32 0.20 -1.00 16 15 N -0.46 -11.28 6.65 -293.04 -1.95 -13.23 16 16 C 0.12 5.22 4.60 46.75 0.21 5.43 16 17 C 0.15 8.07 7.00 86.44 0.60 8.67 16 18 N -0.63 -36.42 3.70 -716.64 -2.65 -39.06 16 19 C -0.23 -14.34 10.69 84.03 0.90 -13.45 16 20 H 0.08 4.77 7.83 -2.91 -0.02 4.75 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.95 -61.11 11.29 21.65 0.24 -60.87 16 23 Si 0.98 48.46 29.56 68.60 2.03 50.49 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.12 5.44 8.27 86.48 0.71 6.16 16 28 H 0.04 1.05 7.08 -2.39 -0.02 1.04 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 32 H 0.11 2.82 5.28 -2.39 -0.01 2.81 16 33 H 0.24 5.11 8.06 -2.91 -0.02 5.09 16 34 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 0.75 7.71 -2.39 -0.02 0.73 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.74 7.67 -2.39 -0.02 0.72 16 43 H 0.13 4.80 7.90 -2.38 -0.02 4.78 16 44 H 0.02 1.39 5.77 -2.39 -0.01 1.38 16 45 H 0.05 2.76 6.87 -2.39 -0.02 2.75 16 46 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.04 1.92 6.24 -2.39 -0.01 1.91 16 Total: -1.00 -79.45 379.87 3.52 -75.94 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.96 Total: 13.27 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 7.15 Total: 26.88 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -6.57 Total: -136.13 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.05 Total: -30.44 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -79.45 3.52 -75.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957056318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.114 kcal (2) G-P(sol) polarization free energy of solvation -79.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds