Wall clock time and date at job start Tue Mar 31 2020 18:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.63766 * 60.41587 * 6 4 3 8 8 C 1.53300 * 109.64067 * 181.04078 * 6 4 3 9 9 C 1.52773 * 108.54608 * 189.55087 * 8 6 4 10 10 C 1.50592 * 110.46368 * 308.65227 * 9 8 6 11 11 N 1.32518 * 118.22817 * 197.66488 * 10 9 8 12 12 N 1.28096 * 122.68278 * 180.57801 * 11 10 9 13 13 C 1.32525 * 122.04132 * 359.97279 * 12 11 10 14 14 N 1.39045 * 120.29822 * 179.89617 * 13 12 11 15 15 C 1.46502 * 119.99698 * 5.00746 * 14 13 12 16 16 C 1.53003 * 109.47454 * 89.99859 * 15 14 13 17 17 C 1.46499 * 120.00283 * 185.00438 * 14 13 12 18 18 C 1.50692 * 109.47567 * 90.00208 * 17 14 13 19 19 H 1.08001 * 119.99755 * 0.02562 * 18 17 14 20 20 C 1.37869 * 120.00366 * 180.02562 * 18 17 14 21 21 N 1.31506 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47273 * 59.99937 * 22 20 18 24 24 H 1.48504 * 109.47283 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47150 * 299.99863 * 22 20 18 26 26 C 1.39338 * 119.41046 * 359.88200 * 13 12 11 27 27 C 1.38015 * 122.29203 * 17.99472 * 10 9 8 28 28 C 1.50280 * 122.98169 * 359.27949 * 27 10 9 29 29 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 34 34 H 1.09000 * 109.62767 * 309.26718 * 8 6 4 35 35 H 1.09001 * 109.62852 * 69.83323 * 8 6 4 36 36 H 1.08997 * 109.30803 * 188.34893 * 9 8 6 37 37 H 1.09006 * 109.30836 * 68.95623 * 9 8 6 38 38 H 1.09007 * 109.47045 * 209.99847 * 15 14 13 39 39 H 1.09001 * 109.46943 * 329.99173 * 15 14 13 40 40 H 1.09000 * 109.46663 * 299.99838 * 16 15 14 41 41 H 1.08991 * 109.47131 * 59.99690 * 16 15 14 42 42 H 1.09002 * 109.46839 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.46998 * 210.00348 * 17 14 13 44 44 H 1.09003 * 109.47343 * 329.99611 * 17 14 13 45 45 H 0.97005 * 120.00879 * 180.02562 * 21 20 18 46 46 H 1.07995 * 120.96308 * 180.02562 * 26 13 12 47 47 H 1.08996 * 109.30914 * 257.13255 * 28 27 10 48 48 H 1.09002 * 109.30338 * 137.73318 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5921 3.4693 0.8940 8 6 5.4517 2.8617 -0.0245 9 6 6.0115 4.2625 0.2168 10 6 5.3758 5.2527 -0.7230 11 7 5.9772 6.4194 -0.9050 12 7 5.5063 7.3276 -1.6759 13 6 4.3772 7.1617 -2.3498 14 7 3.8979 8.1730 -3.1750 15 6 4.6949 9.3835 -3.3887 16 6 5.6126 9.1835 -4.5965 17 6 2.5960 8.0278 -3.8309 18 6 1.5189 8.5902 -2.9395 19 1 1.7783 9.0138 -1.9805 20 6 0.2024 8.5640 -3.3482 21 7 -0.1134 8.0487 -4.5162 22 14 -1.1326 9.2617 -2.2436 23 1 -0.8641 10.7002 -1.9906 24 1 -2.4525 9.1134 -2.9078 25 1 -1.1426 8.5257 -0.9537 26 6 3.6749 5.9649 -2.2242 27 6 4.1956 4.9860 -1.3870 28 6 3.4525 3.6875 -1.2454 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.7983 2.1888 0.7599 35 1 5.7840 2.4971 -0.9965 36 1 7.0893 4.2527 0.0547 37 1 5.8076 4.5599 1.2455 38 1 4.0306 10.2280 -3.5729 39 1 5.2981 9.5824 -2.5028 40 1 6.2767 8.3391 -4.4121 41 1 5.0093 8.9847 -5.4821 42 1 6.2058 10.0841 -4.7551 43 1 2.6036 8.5687 -4.7772 44 1 2.3988 6.9722 -4.0175 45 1 -1.0396 8.0305 -4.8040 46 1 2.7525 5.8029 -2.7621 47 1 3.6331 3.0710 -2.1259 48 1 2.3847 3.8904 -1.1639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:30 Heat of formation + Delta-G solvation = -44.667675 kcal Electronic energy + Delta-G solvation = -28948.458903 eV Core-core repulsion = 25003.212806 eV Total energy + Delta-G solvation = -3945.246097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08321 -40.38718 -37.68063 -36.78735 -36.05414 -32.95627 -32.92001 -32.11566 -31.14813 -30.65953 -29.07125 -26.66794 -25.70797 -24.21531 -23.29098 -23.18209 -22.24223 -21.86538 -20.57430 -19.50166 -17.90536 -17.26357 -16.96535 -16.62103 -16.28581 -16.18577 -15.47256 -14.95312 -14.62532 -14.35330 -14.15415 -14.03316 -13.77395 -13.66042 -13.29108 -13.06204 -12.89536 -12.85276 -12.49972 -12.27731 -12.11826 -12.02177 -11.98808 -11.76071 -11.66245 -11.45818 -11.20096 -11.13534 -11.05048 -10.73652 -10.70068 -10.53995 -10.46401 -10.25912 -10.23215 -10.08664 -9.42416 -9.18865 -8.89797 -8.62033 -6.98839 -6.20488 -4.31230 1.41374 1.78313 2.03423 2.47444 3.20967 3.25824 3.28774 3.66307 4.19078 4.28067 4.31922 4.52510 4.61047 4.65905 4.69713 4.74026 4.93235 4.97888 5.01898 5.09317 5.23716 5.31006 5.42410 5.43383 5.48625 5.53644 5.59727 5.63323 5.66569 5.75506 5.79185 5.80812 5.88806 5.91999 6.05838 6.14160 6.24270 6.28282 6.32202 6.33901 6.56676 6.65232 6.73393 6.92541 7.12519 7.58932 7.65996 7.92724 8.00743 8.14639 8.75927 9.35789 9.51306 10.82939 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008846 B = 0.003865 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.343022 B = 7243.573530 C = 9745.121005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.471 3.529 5 O -0.508 6.508 6 C -0.079 4.079 7 H 0.116 0.884 8 C -0.101 4.101 9 C -0.048 4.048 10 C -0.009 4.009 11 N -0.207 5.207 12 N -0.321 5.321 13 C 0.356 3.644 14 N -0.575 5.575 15 C 0.122 3.878 16 C -0.163 4.163 17 C 0.250 3.750 18 C -0.539 4.539 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.169 4.169 27 C -0.045 4.045 28 C -0.067 4.067 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.266 0.734 46 H 0.154 0.846 47 H 0.086 0.914 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -12.386 6.842 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.314 3.686 5 O -0.396 6.396 6 C -0.099 4.099 7 H 0.133 0.867 8 C -0.139 4.139 9 C -0.086 4.086 10 C -0.159 4.159 11 N -0.050 5.050 12 N -0.175 5.175 13 C 0.116 3.884 14 N -0.284 5.284 15 C -0.002 4.002 16 C -0.222 4.222 17 C 0.130 3.870 18 C -0.577 4.577 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.203 4.203 27 C -0.055 4.055 28 C -0.105 4.105 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.171 0.829 47 H 0.104 0.896 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.353 -11.540 6.875 14.859 hybrid contribution -2.249 -0.643 0.081 2.340 sum 4.104 -12.182 6.956 14.617 Atomic orbital electron populations 1.21819 0.92517 1.02912 1.03885 1.23035 0.95525 0.80222 1.02474 1.86555 1.24492 1.32334 1.83703 1.23713 0.80540 0.92506 0.71863 1.90651 1.60487 1.43076 1.45391 1.21145 0.97142 0.89497 1.02069 0.86650 1.21500 0.91261 0.97123 1.04001 1.20034 1.00372 0.90650 0.97590 1.21887 0.95113 0.96478 1.02395 1.72651 1.25270 0.98251 1.08799 1.72803 1.12249 1.23166 1.09294 1.20031 0.90699 0.88415 0.89300 1.47117 1.20298 1.15182 1.45817 1.21293 0.93695 0.87189 0.97982 1.22141 0.99651 1.01396 0.98984 1.19424 0.76656 0.98070 0.92837 1.21489 0.91420 1.40648 1.04183 0.92155 1.24924 0.98545 0.95024 0.95194 1.69904 1.19137 1.44614 1.19399 0.86562 0.80574 0.79761 0.80638 1.20068 1.21065 1.20086 1.21948 1.03174 0.92762 1.02384 1.20034 0.94418 0.95631 0.95450 1.20323 1.00862 0.92765 0.96540 0.91167 0.91393 0.90312 0.91328 0.91215 0.89863 0.90608 0.89549 0.90290 0.90574 0.90552 0.92971 0.92758 0.92329 0.94224 0.94655 0.92396 0.82854 0.89571 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.35 -4.08 10.15 -39.27 -0.40 -4.48 16 4 C 0.47 5.65 7.24 36.00 0.26 5.91 16 5 O -0.51 -7.07 15.59 -18.75 -0.29 -7.36 16 6 C -0.08 -0.88 2.66 -91.71 -0.24 -1.12 16 7 H 0.12 1.16 8.11 -51.93 -0.42 0.74 16 8 C -0.10 -1.07 4.70 -26.69 -0.13 -1.20 16 9 C -0.05 -0.56 5.95 -28.05 -0.17 -0.73 16 10 C -0.01 -0.15 6.69 -82.43 -0.55 -0.70 16 11 N -0.21 -3.87 11.36 33.55 0.38 -3.49 16 12 N -0.32 -6.52 10.28 31.21 0.32 -6.20 16 13 C 0.36 7.31 7.45 -154.80 -1.15 6.16 16 14 N -0.58 -12.05 2.57 -175.09 -0.45 -12.50 16 15 C 0.12 2.23 6.20 -4.04 -0.03 2.20 16 16 C -0.16 -2.57 10.24 37.16 0.38 -2.19 16 17 C 0.25 5.89 5.03 -5.20 -0.03 5.86 16 18 C -0.54 -13.98 9.39 -34.45 -0.32 -14.30 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.07 1.74 5.46 -17.83 -0.10 1.64 16 21 N -0.89 -24.26 13.28 55.43 0.74 -23.53 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.17 -3.19 8.99 -38.92 -0.35 -3.54 16 27 C -0.05 -0.72 5.74 -104.65 -0.60 -1.32 16 28 C -0.07 -0.85 4.96 -28.17 -0.14 -0.99 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.08 0.81 7.80 -51.93 -0.41 0.40 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.39 8.07 -51.92 -0.42 0.97 16 39 H 0.08 1.38 7.33 -51.93 -0.38 1.00 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.04 0.86 6.04 -51.93 -0.31 0.55 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.15 3.00 6.15 -52.49 -0.32 2.67 16 47 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 48 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -29.87 394.69 -9.04 -38.92 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.72 Total: 1.50 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.55 Total: -4.25 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.99 Total: -45.71 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.69 Total: -11.84 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.87 -9.04 -38.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.751 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds