Wall clock time and date at job start Tue Mar 31 2020 17:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 O 1.42896 * 109.47475 * 239.99801 * 2 1 3 5 5 C 1.35912 * 116.99844 * 84.89097 * 4 2 1 6 6 C 1.39144 * 120.47510 * 354.42114 * 5 4 2 7 7 C 1.38539 * 118.37357 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22303 * 359.97438 * 7 6 5 9 9 N 1.31850 * 120.88404 * 0.02562 * 8 7 6 10 10 C 1.31844 * 121.78158 * 359.70695 * 9 8 7 11 11 C 1.50702 * 109.47405 * 119.99570 * 2 1 3 12 12 O 1.21274 * 119.99997 * 120.00366 * 11 2 1 13 13 N 1.34775 * 119.99646 * 300.27833 * 11 2 1 14 14 C 1.46498 * 119.99707 * 174.74901 * 13 11 2 15 15 C 1.53002 * 109.47461 * 175.31375 * 14 13 11 16 16 C 1.53004 * 109.47418 * 179.32111 * 15 14 13 17 17 C 1.53000 * 115.54587 * 40.24565 * 16 15 14 18 18 N 1.46503 * 109.47089 * 62.91319 * 17 16 15 19 19 C 1.36935 * 119.99745 * 185.17449 * 18 17 16 20 20 H 1.07998 * 120.00039 * 4.85504 * 19 18 17 21 21 C 1.38809 * 119.99932 * 184.85043 * 19 18 17 22 22 N 1.31622 * 120.00123 * 183.35057 * 21 19 18 23 23 Si 1.86802 * 119.99935 * 3.35261 * 21 19 18 24 24 H 1.48501 * 109.46966 * 91.12519 * 23 21 19 25 25 H 1.48501 * 109.47069 * 211.12411 * 23 21 19 26 26 H 1.48496 * 109.46983 * 331.12198 * 23 21 19 27 27 C 1.52997 * 117.49828 * 254.53658 * 16 15 14 28 28 C 1.52991 * 60.00035 * 252.51381 * 27 16 15 29 29 H 1.08991 * 109.47084 * 60.00383 * 1 2 3 30 30 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46975 * 300.00041 * 1 2 3 32 32 H 1.08001 * 120.81348 * 359.97438 * 6 5 4 33 33 H 1.07993 * 120.38501 * 180.02562 * 7 6 5 34 34 H 1.07994 * 119.55697 * 179.97438 * 8 7 6 35 35 H 1.08007 * 119.65528 * 180.28746 * 10 9 8 36 36 H 0.97001 * 120.00538 * 354.74708 * 13 11 2 37 37 H 1.09007 * 109.47264 * 295.31273 * 14 13 11 38 38 H 1.09003 * 109.47729 * 55.31169 * 14 13 11 39 39 H 1.08998 * 109.47423 * 299.32578 * 15 14 13 40 40 H 1.09002 * 109.46777 * 59.32128 * 15 14 13 41 41 H 1.09002 * 109.46421 * 182.90800 * 17 16 15 42 42 H 1.08994 * 109.47487 * 302.90560 * 17 16 15 43 43 H 0.96997 * 119.99784 * 5.16501 * 18 17 16 44 44 H 0.97000 * 119.99920 * 180.02562 * 22 21 19 45 45 H 1.08994 * 117.50181 * 0.02562 * 27 16 15 46 46 H 1.09005 * 117.50014 * 145.02135 * 27 16 15 47 47 H 1.09004 * 117.49919 * 252.51285 * 28 27 16 48 48 H 1.08996 * 117.50303 * 107.49514 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1104 0.0621 -2.3047 6 6 1.6549 1.3764 -2.3394 7 6 1.7820 2.0862 -3.5224 8 6 2.3531 1.4707 -4.6208 9 7 2.7747 0.2232 -4.5545 10 6 2.6769 -0.4848 -3.4466 11 6 2.0324 -0.7103 1.2305 12 8 2.7297 -1.6963 1.1193 13 7 1.7022 -0.2530 2.4545 14 6 2.0932 -1.0070 3.6482 15 6 1.7024 -0.2189 4.9000 16 6 2.0955 -1.0140 6.1467 17 6 3.4455 -1.7303 6.0739 18 7 4.5162 -0.7409 5.9294 19 6 5.8078 -1.1529 5.7370 20 1 6.0268 -2.2032 5.6134 21 6 6.8356 -0.2207 5.7008 22 7 8.0680 -0.6092 5.4502 23 14 6.4698 1.5853 6.0076 24 1 6.6185 1.8814 7.4551 25 1 7.4198 2.4217 5.2310 26 1 5.0802 1.8883 5.5805 27 6 0.9739 -1.6974 6.9315 28 6 1.6632 -0.4577 7.5048 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2124 1.8318 -1.4658 33 1 1.4397 3.1085 -3.5855 34 1 2.4544 2.0188 -5.5458 35 1 3.0377 -1.5027 -3.4293 36 1 1.2056 0.5753 2.5452 37 1 1.5843 -1.9709 3.6520 38 1 3.1716 -1.1656 3.6408 39 1 2.2205 0.7400 4.9023 40 1 0.6255 -0.0500 4.9015 41 1 3.6019 -2.3042 6.9874 42 1 3.4541 -2.4030 5.2164 43 1 4.3101 0.2061 5.9698 44 1 8.7863 0.0422 5.4253 45 1 -0.0439 -1.5810 6.5595 46 1 1.1976 -2.6578 7.3962 47 1 2.3404 -0.6023 8.3466 48 1 1.0987 0.4747 7.5102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167158988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:40 Heat of formation + Delta-G solvation = 4.558126 kcal Electronic energy + Delta-G solvation = -28206.897149 eV Core-core repulsion = 24263.785644 eV Total energy + Delta-G solvation = -3943.111506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14820 -39.87705 -38.63812 -38.01573 -34.93939 -34.07890 -32.82168 -32.48034 -31.13867 -30.48770 -29.74947 -26.30351 -25.37614 -24.21225 -23.60279 -22.71867 -22.37891 -21.85686 -20.57177 -18.92342 -18.78626 -17.84128 -17.33255 -17.05491 -16.38091 -16.13366 -15.92245 -15.37484 -15.08882 -14.78320 -14.59661 -14.37521 -14.23496 -13.99384 -13.68614 -13.50867 -13.35252 -13.14184 -12.74027 -12.66561 -12.53950 -12.41867 -12.05660 -11.91004 -11.68306 -11.53197 -11.44843 -11.17679 -10.92840 -10.76506 -10.20761 -10.15813 -9.92690 -9.90485 -9.78787 -9.61214 -9.49659 -9.04767 -8.86924 -8.74073 -7.19893 -5.74259 -3.09590 0.80923 0.90474 2.29516 2.50753 3.31333 3.33652 3.38921 3.44158 3.48457 3.88838 4.13112 4.24308 4.35603 4.39263 4.42796 4.53700 4.59667 4.75397 4.78828 4.85728 4.88943 5.00435 5.06259 5.12142 5.16907 5.36014 5.40869 5.52844 5.55950 5.59184 5.65060 5.68735 5.71336 5.74125 5.84011 6.03506 6.05701 6.14728 6.23416 6.28121 6.32489 6.41212 6.65304 6.70755 6.85268 7.37217 7.65802 8.03429 8.12421 8.44989 9.24490 9.96093 10.16810 11.44302 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.002789 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.059561 B =10036.621593 C =11546.967849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 H 0.098 0.902 4 O -0.275 6.275 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.131 4.131 8 C 0.054 3.946 9 N -0.446 5.446 10 C 0.079 3.921 11 C 0.514 3.486 12 O -0.504 6.504 13 N -0.724 5.724 14 C 0.118 3.882 15 C -0.085 4.085 16 C -0.127 4.127 17 C 0.188 3.812 18 N -0.751 5.751 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.280 1.280 27 C -0.171 4.171 28 C -0.170 4.170 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.038 0.962 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.489 6.961 -11.901 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.116 0.884 4 O -0.186 6.186 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.151 4.151 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.080 4.080 11 C 0.297 3.703 12 O -0.377 6.377 13 N -0.377 5.377 14 C -0.005 4.005 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.061 3.939 18 N -0.396 5.396 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.717 3.283 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.207 1.207 27 C -0.209 4.209 28 C -0.207 4.207 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.353 5.452 -12.704 25.437 hybrid contribution -0.830 2.520 1.155 2.894 sum -22.183 7.972 -11.549 26.249 Atomic orbital electron populations 1.22336 0.92482 1.04666 1.03730 1.22274 0.95694 0.97218 0.84390 0.88412 1.86262 1.80672 1.36351 1.15309 1.20272 0.96485 0.91266 0.88325 1.21786 1.03718 0.94076 1.00149 1.21999 0.98979 1.01068 0.93022 1.22694 0.97312 0.91347 0.98889 1.67765 1.14793 1.07480 1.25485 1.22312 0.98422 1.01160 0.86138 1.19885 0.81028 0.85438 0.83924 1.90809 1.35128 1.25657 1.86150 1.45852 1.58787 1.27471 1.05614 1.21583 1.03172 0.94145 0.81580 1.21182 1.00071 0.98835 0.92157 1.21650 0.96751 1.02636 0.91805 1.20223 0.83551 0.91330 0.98753 1.42664 1.04228 1.03562 1.89190 1.19054 0.81683 0.95074 1.41307 0.89260 1.24681 0.95168 0.97295 1.01966 1.69708 0.99241 1.33283 1.55848 0.86527 0.76827 0.87012 0.77916 1.21186 1.21904 1.20655 1.23023 0.96400 0.97280 1.04168 1.22969 1.03415 0.97222 0.97118 0.90806 0.90379 0.90068 0.84153 0.84439 0.82486 0.81626 0.77024 0.91583 0.88505 0.90962 0.91877 0.95699 0.94409 0.80516 0.93109 0.89152 0.88714 0.88432 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.08 37.16 0.34 -0.83 16 2 C 0.06 0.66 2.65 -27.88 -0.07 0.58 16 3 H 0.10 0.78 6.36 -51.92 -0.33 0.45 16 4 O -0.28 -3.51 9.34 -39.38 -0.37 -3.88 16 5 C 0.08 0.94 6.62 -39.07 -0.26 0.68 16 6 C -0.17 -1.45 8.34 -39.13 -0.33 -1.78 16 7 C -0.13 -0.97 10.11 -39.46 -0.40 -1.37 16 8 C 0.05 0.47 11.18 -17.54 -0.20 0.28 16 9 N -0.45 -5.07 10.36 -13.12 -0.14 -5.21 16 10 C 0.08 0.90 11.14 -17.37 -0.19 0.71 16 11 C 0.51 7.20 7.23 -10.99 -0.08 7.12 16 12 O -0.50 -9.85 16.48 -14.35 -0.24 -10.09 16 13 N -0.72 -8.41 5.40 -60.29 -0.33 -8.74 16 14 C 0.12 1.67 4.85 -4.04 -0.02 1.65 16 15 C -0.08 -1.05 5.27 -26.73 -0.14 -1.19 16 16 C -0.13 -1.81 1.85 -154.51 -0.29 -2.09 16 17 C 0.19 3.56 5.26 -4.04 -0.02 3.54 16 18 N -0.75 -17.46 5.16 -59.91 -0.31 -17.76 16 19 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 23 Si 0.89 22.22 27.89 -169.99 -4.74 17.48 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.46 6.31 56.52 0.36 -6.10 16 27 C -0.17 -1.97 9.88 -26.74 -0.26 -2.24 16 28 C -0.17 -2.17 9.97 -26.74 -0.27 -2.43 16 29 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.36 7.67 -51.93 -0.40 -0.04 16 32 H 0.14 0.85 5.59 -52.49 -0.29 0.56 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.40 3.07 8.05 -40.82 -0.33 2.74 16 37 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.10 1.83 6.73 -51.93 -0.35 1.48 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 41 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 42 H 0.04 0.75 6.82 -51.93 -0.35 0.39 16 43 H 0.36 8.22 5.40 -40.82 -0.22 8.00 16 44 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 45 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -36.78 395.59 -9.12 -45.90 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.30 Total: 9.70 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.44 Total: -4.36 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.00 Total: -60.71 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.60 Total: -13.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.74 Total: 17.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.78 -9.12 -45.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167158988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.454 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds