Wall clock time and date at job start Tue Mar 31 2020 17:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 O 1.42896 * 109.47475 * 239.99801 * 2 1 3 5 5 C 1.35912 * 116.99844 * 84.89097 * 4 2 1 6 6 C 1.39144 * 120.47510 * 354.42114 * 5 4 2 7 7 C 1.38539 * 118.37357 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22303 * 359.97438 * 7 6 5 9 9 N 1.31850 * 120.88404 * 0.02562 * 8 7 6 10 10 C 1.31844 * 121.78158 * 359.70695 * 9 8 7 11 11 C 1.50702 * 109.47405 * 119.99570 * 2 1 3 12 12 O 1.21274 * 119.99997 * 120.00366 * 11 2 1 13 13 N 1.34775 * 119.99646 * 300.27833 * 11 2 1 14 14 C 1.46498 * 119.99707 * 174.74901 * 13 11 2 15 15 C 1.53002 * 109.47461 * 175.31375 * 14 13 11 16 16 C 1.53004 * 109.47418 * 179.32111 * 15 14 13 17 17 C 1.53000 * 115.54587 * 40.24565 * 16 15 14 18 18 N 1.46503 * 109.47089 * 62.91319 * 17 16 15 19 19 C 1.36935 * 119.99745 * 185.17449 * 18 17 16 20 20 H 1.07998 * 120.00039 * 4.85504 * 19 18 17 21 21 C 1.38809 * 119.99932 * 184.85043 * 19 18 17 22 22 N 1.31622 * 120.00123 * 183.35057 * 21 19 18 23 23 Si 1.86802 * 119.99935 * 3.35261 * 21 19 18 24 24 H 1.48501 * 109.46966 * 91.12519 * 23 21 19 25 25 H 1.48501 * 109.47069 * 211.12411 * 23 21 19 26 26 H 1.48496 * 109.46983 * 331.12198 * 23 21 19 27 27 C 1.52997 * 117.49828 * 254.53658 * 16 15 14 28 28 C 1.52991 * 60.00035 * 252.51381 * 27 16 15 29 29 H 1.08991 * 109.47084 * 60.00383 * 1 2 3 30 30 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46975 * 300.00041 * 1 2 3 32 32 H 1.08001 * 120.81348 * 359.97438 * 6 5 4 33 33 H 1.07993 * 120.38501 * 180.02562 * 7 6 5 34 34 H 1.07994 * 119.55697 * 179.97438 * 8 7 6 35 35 H 1.08007 * 119.65528 * 180.28746 * 10 9 8 36 36 H 0.97001 * 120.00538 * 354.74708 * 13 11 2 37 37 H 1.09007 * 109.47264 * 295.31273 * 14 13 11 38 38 H 1.09003 * 109.47729 * 55.31169 * 14 13 11 39 39 H 1.08998 * 109.47423 * 299.32578 * 15 14 13 40 40 H 1.09002 * 109.46777 * 59.32128 * 15 14 13 41 41 H 1.09002 * 109.46421 * 182.90800 * 17 16 15 42 42 H 1.08994 * 109.47487 * 302.90560 * 17 16 15 43 43 H 0.96997 * 119.99784 * 5.16501 * 18 17 16 44 44 H 0.97000 * 119.99920 * 180.02562 * 22 21 19 45 45 H 1.08994 * 117.50181 * 0.02562 * 27 16 15 46 46 H 1.09005 * 117.50014 * 145.02135 * 27 16 15 47 47 H 1.09004 * 117.49919 * 252.51285 * 28 27 16 48 48 H 1.08996 * 117.50303 * 107.49514 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1104 0.0621 -2.3047 6 6 1.6549 1.3764 -2.3394 7 6 1.7820 2.0862 -3.5224 8 6 2.3531 1.4707 -4.6208 9 7 2.7747 0.2232 -4.5545 10 6 2.6769 -0.4848 -3.4466 11 6 2.0324 -0.7103 1.2305 12 8 2.7297 -1.6963 1.1193 13 7 1.7022 -0.2530 2.4545 14 6 2.0932 -1.0070 3.6482 15 6 1.7024 -0.2189 4.9000 16 6 2.0955 -1.0140 6.1467 17 6 3.4455 -1.7303 6.0739 18 7 4.5162 -0.7409 5.9294 19 6 5.8078 -1.1529 5.7370 20 1 6.0268 -2.2032 5.6134 21 6 6.8356 -0.2207 5.7008 22 7 8.0680 -0.6092 5.4502 23 14 6.4698 1.5853 6.0076 24 1 6.6185 1.8814 7.4551 25 1 7.4198 2.4217 5.2310 26 1 5.0802 1.8883 5.5805 27 6 0.9739 -1.6974 6.9315 28 6 1.6632 -0.4577 7.5048 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2124 1.8318 -1.4658 33 1 1.4397 3.1085 -3.5855 34 1 2.4544 2.0188 -5.5458 35 1 3.0377 -1.5027 -3.4293 36 1 1.2056 0.5753 2.5452 37 1 1.5843 -1.9709 3.6520 38 1 3.1716 -1.1656 3.6408 39 1 2.2205 0.7400 4.9023 40 1 0.6255 -0.0500 4.9015 41 1 3.6019 -2.3042 6.9874 42 1 3.4541 -2.4030 5.2164 43 1 4.3101 0.2061 5.9698 44 1 8.7863 0.0422 5.4253 45 1 -0.0439 -1.5810 6.5595 46 1 1.1976 -2.6578 7.3962 47 1 2.3404 -0.6023 8.3466 48 1 1.0987 0.4747 7.5102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167158988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:39 Heat of formation + Delta-G solvation = -22.189566 kcal Electronic energy + Delta-G solvation = -28208.057016 eV Core-core repulsion = 24263.785644 eV Total energy + Delta-G solvation = -3944.271373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.94357 -40.85695 -39.70345 -38.97188 -36.16230 -35.93809 -33.58611 -33.24115 -33.16745 -31.31483 -30.65082 -28.06967 -26.14868 -25.00147 -24.42041 -24.27160 -23.49043 -23.02137 -21.62003 -20.42643 -19.54356 -19.28192 -18.56826 -17.77152 -17.33354 -17.03555 -16.87040 -16.62712 -16.49018 -16.14151 -15.60626 -15.43329 -15.20823 -15.10401 -14.85000 -14.69357 -14.41914 -14.22956 -14.05056 -13.98520 -13.44092 -13.35412 -13.15450 -13.07581 -12.87688 -12.65520 -12.58348 -12.30475 -12.22443 -12.18956 -11.91764 -11.82979 -11.12928 -11.04877 -10.91671 -10.73744 -10.59948 -10.56514 -10.18001 -9.49573 -9.28975 -8.04304 -5.37556 0.12373 0.21856 1.31431 1.39562 1.40555 1.46108 1.48658 2.44208 2.46509 2.78053 2.85609 3.26270 3.39760 3.55749 3.60306 3.69826 3.73973 3.77357 3.80148 3.88996 3.94634 4.07676 4.12403 4.13079 4.30483 4.40799 4.46946 4.59723 4.61548 4.64491 4.75783 4.87324 4.93994 4.97970 5.00238 5.05588 5.10282 5.11623 5.14567 5.22346 5.30102 5.37364 5.38725 5.44316 5.73637 6.11902 6.19705 6.45957 6.95047 7.07346 7.14348 7.82790 8.05569 9.17974 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.002789 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.059561 B =10036.621593 C =11546.967849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.067 3.933 3 H 0.126 0.874 4 O -0.309 6.309 5 C 0.066 3.934 6 C -0.166 4.166 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.474 5.474 10 C 0.048 3.952 11 C 0.506 3.494 12 O -0.576 6.576 13 N -0.703 5.703 14 C 0.123 3.877 15 C -0.072 4.072 16 C -0.150 4.150 17 C 0.186 3.814 18 N -0.746 5.746 19 C -0.234 4.234 20 H 0.045 0.955 21 C -0.069 4.069 22 N -0.988 5.988 23 Si 0.963 3.037 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.244 1.244 27 C -0.147 4.147 28 C -0.164 4.164 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.420 0.580 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.015 0.985 42 H 0.019 0.981 43 H 0.369 0.631 44 H 0.257 0.743 45 H 0.124 0.876 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.051 11.458 -11.434 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 H 0.143 0.857 4 O -0.222 6.222 5 C 0.019 3.981 6 C -0.192 4.192 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.184 5.184 10 C -0.109 4.109 11 C 0.291 3.709 12 O -0.454 6.454 13 N -0.357 5.357 14 C 0.000 4.000 15 C -0.109 4.109 16 C -0.151 4.151 17 C 0.060 3.940 18 N -0.392 5.392 19 C -0.365 4.365 20 H 0.063 0.937 21 C -0.260 4.260 22 N -0.638 5.638 23 Si 0.790 3.210 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.168 1.168 27 C -0.184 4.184 28 C -0.201 4.201 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.189 0.811 33 H 0.196 0.804 34 H 0.202 0.798 35 H 0.171 0.829 36 H 0.259 0.741 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.203 0.797 44 H 0.066 0.934 45 H 0.142 0.858 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -26.008 9.970 -12.211 30.412 hybrid contribution 0.608 1.001 0.972 1.522 sum -25.400 10.971 -11.239 29.864 Atomic orbital electron populations 1.22359 0.89321 1.04478 1.06202 1.22450 0.97820 0.97216 0.81749 0.85676 1.86216 1.81538 1.38012 1.16396 1.20357 0.97631 0.92568 0.87566 1.22162 1.02660 0.92683 1.01697 1.22444 0.97152 1.02512 0.91756 1.23303 0.96525 0.90600 1.00685 1.67737 1.15993 1.09034 1.25614 1.22257 1.00128 1.01341 0.87208 1.20779 0.79781 0.84678 0.85628 1.90780 1.38407 1.28972 1.87238 1.45646 1.57926 1.27875 1.04292 1.21315 0.99708 0.95256 0.83759 1.21141 1.02767 0.97453 0.89577 1.21469 0.94930 1.04668 0.93990 1.20275 0.85577 0.90932 0.97191 1.42548 1.03164 1.04670 1.88813 1.18994 0.84315 0.93264 1.39922 0.93697 1.25621 0.94757 1.03184 1.02441 1.69924 1.00674 1.35207 1.58009 0.85292 0.78291 0.79560 0.77899 1.20305 1.22487 1.16847 1.23144 0.96779 0.96738 1.01783 1.23050 1.03150 0.99050 0.94858 0.88941 0.91973 0.86829 0.81124 0.80400 0.79832 0.82907 0.74147 0.91936 0.94184 0.91334 0.87203 0.96668 0.96348 0.79728 0.93404 0.85820 0.89149 0.90081 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.08 71.98 0.65 -1.04 16 2 C 0.07 1.26 2.65 29.85 0.08 1.34 16 3 H 0.13 1.59 6.36 -2.38 -0.02 1.58 16 4 O -0.31 -8.11 9.34 -73.53 -0.69 -8.80 16 5 C 0.07 1.47 6.62 22.60 0.15 1.62 16 6 C -0.17 -2.33 8.34 22.56 0.19 -2.14 16 7 C -0.12 -1.34 10.11 22.35 0.23 -1.12 16 8 C 0.05 0.71 11.18 84.69 0.95 1.66 16 9 N -0.47 -10.92 10.36 -195.44 -2.02 -12.94 16 10 C 0.05 1.18 11.14 84.80 0.94 2.13 16 11 C 0.51 14.18 7.23 87.66 0.63 14.81 16 12 O -0.58 -24.10 16.48 16.03 0.26 -23.84 16 13 N -0.70 -15.09 5.40 -463.06 -2.50 -17.59 16 14 C 0.12 3.43 4.85 86.38 0.42 3.85 16 15 C -0.07 -1.53 5.27 30.60 0.16 -1.37 16 16 C -0.15 -3.90 1.85 -52.18 -0.10 -3.99 16 17 C 0.19 7.22 5.26 86.38 0.45 7.68 16 18 N -0.75 -35.23 5.16 -343.46 -1.77 -37.01 16 19 C -0.23 -13.95 10.47 84.03 0.88 -13.07 16 20 H 0.04 3.00 8.06 -2.91 -0.02 2.98 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.99 -65.93 13.97 21.65 0.30 -65.63 16 23 Si 0.96 46.05 27.89 68.60 1.91 47.96 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.24 -10.09 6.31 99.48 0.63 -9.46 16 27 C -0.15 -2.83 9.88 30.59 0.30 -2.53 16 28 C -0.16 -3.55 9.97 30.59 0.30 -3.25 16 29 H 0.09 0.64 6.92 -2.39 -0.02 0.62 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.11 0.40 7.67 -2.38 -0.02 0.38 16 32 H 0.17 1.22 5.59 -2.91 -0.02 1.20 16 33 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.42 4.76 8.05 -92.71 -0.75 4.02 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.04 1.59 6.73 -2.39 -0.02 1.57 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.38 7.95 -2.39 -0.02 1.36 16 41 H 0.02 0.62 8.11 -2.39 -0.02 0.60 16 42 H 0.02 0.78 6.82 -2.39 -0.02 0.77 16 43 H 0.37 16.25 5.40 -92.71 -0.50 15.75 16 44 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 45 H 0.12 1.64 8.09 -2.39 -0.02 1.62 16 46 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 47 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -90.49 395.59 1.87 -88.62 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.34 Total: 28.39 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.71 Total: 0.83 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -5.99 Total: -133.17 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.42 Total: -32.63 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.91 Total: 47.96 kcal Total: -90.49 1.87 -88.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167158988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.430 kcal (2) G-P(sol) polarization free energy of solvation -90.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds