Wall clock time and date at job start Tue Mar 31 2020 17:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46995 * 2 1 4 4 O 1.42893 * 109.47187 * 239.99776 * 2 1 3 5 5 C 1.35912 * 117.00164 * 84.89850 * 4 2 1 6 6 C 1.39135 * 120.47273 * 354.51002 * 5 4 2 7 7 C 1.38535 * 118.37532 * 179.97438 * 6 5 4 8 8 C 1.38255 * 119.22079 * 359.97438 * 7 6 5 9 9 N 1.31846 * 120.88519 * 0.02562 * 8 7 6 10 10 C 1.31841 * 121.78390 * 359.69915 * 9 8 7 11 11 C 1.50698 * 109.46902 * 119.99793 * 2 1 3 12 12 O 1.21279 * 120.00534 * 119.99838 * 11 2 1 13 13 N 1.34780 * 120.00305 * 300.00363 * 11 2 1 14 14 C 1.46496 * 120.00621 * 180.02562 * 13 11 2 15 15 H 1.09001 * 109.46822 * 34.99069 * 14 13 11 16 16 C 1.53004 * 109.46808 * 274.99647 * 14 13 11 17 17 C 1.53004 * 109.47166 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46645 * 59.99930 * 17 16 14 19 19 C 1.52994 * 109.47282 * 299.99998 * 18 17 16 20 20 C 1.52999 * 109.47321 * 154.99741 * 14 13 11 21 21 H 1.08996 * 109.47111 * 60.00182 * 20 14 13 22 22 N 1.46497 * 109.46979 * 299.99702 * 20 14 13 23 23 C 1.36942 * 119.99861 * 155.00480 * 22 20 14 24 24 H 1.07999 * 120.00043 * 359.97438 * 23 22 20 25 25 C 1.38808 * 119.99631 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00314 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99631 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47311 * 59.99680 * 27 25 23 29 29 H 1.48504 * 109.47278 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47117 * 299.99733 * 27 25 23 31 31 H 1.09000 * 109.47680 * 300.00399 * 1 2 3 32 32 H 1.09005 * 109.46806 * 60.00384 * 1 2 3 33 33 H 1.08998 * 109.47428 * 180.02562 * 1 2 3 34 34 H 1.08005 * 120.81253 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.39003 * 179.97438 * 7 6 5 36 36 H 1.08004 * 119.55624 * 180.02562 * 8 7 6 37 37 H 1.07997 * 119.66280 * 180.29077 * 10 9 8 38 38 H 0.97006 * 119.99474 * 359.97438 * 13 11 2 39 39 H 1.09003 * 109.47277 * 59.99760 * 16 14 13 40 40 H 1.08996 * 109.47510 * 299.99748 * 16 14 13 41 41 H 1.08998 * 109.47164 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.47106 * 300.00493 * 17 16 14 43 43 H 1.09005 * 109.47128 * 60.00469 * 18 17 16 44 44 H 1.08995 * 109.46978 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.47164 * 180.02562 * 19 18 17 46 46 H 1.08996 * 109.47511 * 300.00075 * 19 18 17 47 47 H 0.97002 * 120.00336 * 334.99999 * 22 20 14 48 48 H 0.97005 * 119.99613 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1105 0.0621 -2.3047 6 6 1.6569 1.3769 -2.3389 7 6 1.7849 2.0871 -3.5215 8 6 2.3552 1.4713 -4.6201 9 7 2.7751 0.2232 -4.5543 10 6 2.6764 -0.4852 -3.4468 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1194 13 7 1.7066 -0.2499 2.4546 14 6 2.1953 -0.9401 3.6508 15 1 3.1946 -1.3320 3.4614 16 6 1.2517 -2.0943 3.9949 17 6 1.7623 -2.8156 5.2439 18 6 1.8140 -1.8325 6.4152 19 6 2.7576 -0.6784 6.0711 20 6 2.2465 0.0432 4.8219 21 1 1.2472 0.4350 5.0113 22 7 3.1500 1.1483 4.4924 23 6 2.9923 2.3658 5.0993 24 1 2.2017 2.5113 5.8204 25 6 3.8481 3.4130 4.7867 26 7 4.8114 3.2357 3.9074 27 14 3.6326 5.0739 5.6139 28 1 3.7786 4.9177 7.0834 29 1 4.6658 6.0149 5.1116 30 1 2.2825 5.6094 5.3048 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.2157 1.8329 -1.4648 35 1 1.4433 3.1097 -3.5844 36 1 2.4581 2.0200 -5.5447 37 1 3.0358 -1.5035 -3.4298 38 1 1.1492 0.5390 2.5435 39 1 1.2151 -2.7949 3.1606 40 1 0.2523 -1.7025 4.1843 41 1 1.0898 -3.6376 5.4893 42 1 2.7616 -3.2074 5.0541 43 1 0.8147 -1.4406 6.6050 44 1 2.1773 -2.3464 7.3051 45 1 2.7947 0.0218 6.9057 46 1 3.7568 -1.0702 5.8813 47 1 3.8600 1.0177 3.8445 48 1 5.4096 3.9675 3.6893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228519554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:19 Heat of formation + Delta-G solvation = -58.210222 kcal Electronic energy + Delta-G solvation = -29159.521576 eV Core-core repulsion = 25213.688230 eV Total energy + Delta-G solvation = -3945.833346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95125 -41.04271 -39.65364 -38.67304 -35.81501 -35.30343 -33.39268 -33.14905 -32.94417 -31.12358 -30.41422 -29.23360 -26.02570 -25.58994 -24.80909 -24.11446 -23.09072 -22.48437 -21.39912 -20.76739 -19.52576 -19.24560 -18.53786 -17.76426 -17.29027 -17.21265 -16.80761 -16.63508 -15.93282 -15.74708 -15.42299 -15.31288 -15.21995 -14.84638 -14.68788 -14.60781 -14.43119 -14.09203 -13.98387 -13.63252 -13.54975 -13.31146 -13.13252 -12.91813 -12.77155 -12.64017 -12.31650 -12.26758 -12.16864 -12.06476 -12.00429 -11.63748 -11.44036 -11.13768 -11.00040 -10.83330 -10.68219 -10.60501 -10.02115 -9.48438 -8.99742 -7.90809 -5.20050 0.12383 0.21109 1.48508 1.49322 1.50504 1.51658 1.57301 2.50095 2.57613 2.78287 3.40198 3.44589 3.56069 3.62881 3.68741 3.74961 3.80834 3.84257 3.90618 4.12685 4.13162 4.25771 4.29877 4.31721 4.43802 4.49091 4.58727 4.59002 4.61658 4.69807 4.75536 4.95084 4.99757 5.01442 5.05939 5.09776 5.15144 5.24278 5.30104 5.30961 5.42056 5.45797 5.52648 5.56131 5.66581 6.11372 6.28481 6.50981 6.93702 7.15967 7.35650 8.09050 8.33244 9.31954 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.003643 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.758392 B = 7683.265047 C =10059.369447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.302 6.302 5 C 0.066 3.934 6 C -0.171 4.171 7 C -0.122 4.122 8 C 0.049 3.951 9 N -0.470 5.470 10 C 0.054 3.946 11 C 0.516 3.484 12 O -0.572 6.572 13 N -0.693 5.693 14 C 0.149 3.851 15 H 0.050 0.950 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.130 4.130 20 C 0.174 3.826 21 H 0.065 0.935 22 N -0.732 5.732 23 C -0.231 4.231 24 H 0.081 0.919 25 C -0.071 4.071 26 N -0.971 5.971 27 Si 0.967 3.033 28 H -0.283 1.283 29 H -0.304 1.304 30 H -0.273 1.273 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.412 0.588 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.037 0.963 47 H 0.368 0.632 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 -5.444 -8.025 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.007 3.993 3 H 0.125 0.875 4 O -0.214 6.214 5 C 0.019 3.981 6 C -0.197 4.197 7 C -0.142 4.142 8 C -0.108 4.108 9 N -0.180 5.180 10 C -0.103 4.103 11 C 0.301 3.699 12 O -0.451 6.451 13 N -0.344 5.344 14 C 0.043 3.957 15 H 0.068 0.932 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.147 4.147 19 C -0.170 4.170 20 C 0.065 3.935 21 H 0.083 0.917 22 N -0.371 5.371 23 C -0.363 4.363 24 H 0.099 0.901 25 C -0.264 4.264 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.209 1.209 29 H -0.231 1.231 30 H -0.199 1.199 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.204 0.796 37 H 0.179 0.821 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.199 0.801 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.357 -6.587 -8.681 17.238 hybrid contribution 0.435 1.796 1.026 2.114 sum -12.922 -4.791 -7.655 15.765 Atomic orbital electron populations 1.22322 0.89613 1.04657 1.05653 1.22351 0.97768 0.96792 0.82393 0.87464 1.86176 1.81466 1.37627 1.16123 1.20388 0.97597 0.92304 0.87830 1.22129 1.02916 0.93236 1.01442 1.22413 0.97478 1.02373 0.91912 1.23269 0.96431 0.90698 1.00399 1.67746 1.15875 1.08812 1.25531 1.22299 0.99787 1.01447 0.86801 1.20453 0.79886 0.84375 0.85156 1.90690 1.39126 1.28144 1.87137 1.45721 1.52737 1.31716 1.04228 1.21207 0.97534 0.92960 0.83965 0.93184 1.21809 0.99282 0.95991 0.98250 1.21486 1.01363 0.98241 0.93877 1.21514 0.99867 0.95335 0.98020 1.22114 0.98841 0.97546 0.98534 1.20677 0.94144 0.86931 0.91741 0.91740 1.42600 1.36255 1.08228 1.50032 1.19554 1.11032 0.88453 1.17262 0.90108 1.25457 0.98449 1.01624 1.00836 1.69837 1.21387 1.32531 1.38384 0.85315 0.76983 0.80121 0.77927 1.20933 1.23068 1.19857 0.87954 0.89206 0.91018 0.82350 0.80948 0.79585 0.82104 0.75154 0.92583 0.89689 0.89419 0.93134 0.90638 0.91032 0.93053 0.94362 0.80123 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.08 71.98 0.65 -2.21 16 2 C 0.07 1.73 2.65 29.85 0.08 1.81 16 3 H 0.11 2.62 6.36 -2.39 -0.02 2.60 16 4 O -0.30 -9.09 9.34 -73.53 -0.69 -9.77 16 5 C 0.07 1.75 6.62 22.60 0.15 1.90 16 6 C -0.17 -3.54 8.34 22.56 0.19 -3.35 16 7 C -0.12 -2.07 10.11 22.34 0.23 -1.84 16 8 C 0.05 0.93 11.18 84.69 0.95 1.88 16 9 N -0.47 -11.86 10.35 -195.44 -2.02 -13.89 16 10 C 0.05 1.45 11.14 84.80 0.94 2.39 16 11 C 0.52 17.07 7.20 87.66 0.63 17.70 16 12 O -0.57 -24.01 16.16 16.01 0.26 -23.75 16 13 N -0.69 -20.85 4.80 -442.54 -2.12 -22.97 16 14 C 0.15 4.79 1.98 44.99 0.09 4.88 16 15 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 16 C -0.11 -2.88 5.49 30.60 0.17 -2.71 16 17 C -0.11 -2.53 5.92 30.60 0.18 -2.35 16 18 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 19 C -0.13 -4.23 5.50 30.61 0.17 -4.06 16 20 C 0.17 6.09 2.30 45.01 0.10 6.19 16 21 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 22 N -0.73 -33.90 4.95 -322.88 -1.60 -35.50 16 23 C -0.23 -11.74 9.93 84.03 0.83 -10.91 16 24 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 26 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 27 Si 0.97 43.81 29.55 68.60 2.03 45.83 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 31 H 0.10 1.36 7.56 -2.39 -0.02 1.34 16 32 H 0.09 1.26 6.92 -2.38 -0.02 1.25 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.16 2.66 5.59 -2.91 -0.02 2.64 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.41 10.86 8.02 -92.70 -0.74 10.12 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.37 19.45 7.80 -92.71 -0.72 18.73 16 48 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -72.02 389.90 1.66 -70.36 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.49 Total: 43.48 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 6.01 Total: 3.53 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.47 Total: -129.68 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.43 Total: -33.52 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.02 1.66 -70.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228519554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.148 kcal (2) G-P(sol) polarization free energy of solvation -72.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds