Wall clock time and date at job start Tue Mar 31 2020 17:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47362 * 2 1 4 4 O 1.42905 * 109.47108 * 119.99645 * 2 1 3 5 5 C 1.35673 * 116.99877 * 269.99817 * 4 2 1 6 6 C 1.38922 * 119.68072 * 179.97438 * 5 4 2 7 7 C 1.38385 * 119.10926 * 180.02562 * 6 5 4 8 8 C 1.38824 * 118.48587 * 0.02562 * 7 6 5 9 9 C 1.38046 * 119.29263 * 0.02562 * 8 7 6 10 10 N 1.31967 * 120.83264 * 0.02562 * 9 8 7 11 11 C 1.50694 * 109.47489 * 239.99996 * 2 1 3 12 12 O 1.21289 * 120.00159 * 245.00531 * 11 2 1 13 13 N 1.34774 * 120.00317 * 64.99463 * 11 2 1 14 14 C 1.46502 * 120.00327 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47069 * 180.02562 * 14 13 11 16 16 H 1.08999 * 110.01568 * 305.06290 * 15 14 13 17 17 C 1.53868 * 110.03534 * 66.45279 * 15 14 13 18 18 C 1.54267 * 106.60030 * 119.28372 * 17 15 14 19 19 C 1.54896 * 104.19450 * 23.61220 * 18 17 15 20 20 H 1.08995 * 110.75538 * 80.55581 * 19 18 17 21 21 N 1.46499 * 110.75535 * 203.74477 * 19 18 17 22 22 C 1.36933 * 119.99824 * 273.54078 * 21 19 18 23 23 H 1.08002 * 120.00246 * 0.02562 * 22 21 19 24 24 C 1.38815 * 120.00039 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99891 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00056 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47052 * 60.00550 * 26 24 22 28 28 H 1.48492 * 109.47147 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47224 * 300.00482 * 26 24 22 30 30 C 1.54266 * 110.02967 * 183.62148 * 15 14 13 31 31 H 1.09000 * 109.47011 * 300.00710 * 1 2 3 32 32 H 1.08999 * 109.46899 * 59.99898 * 1 2 3 33 33 H 1.08993 * 109.47245 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.44530 * 0.27676 * 6 5 4 35 35 H 1.08003 * 120.75541 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.35566 * 179.97438 * 8 7 6 37 37 H 1.07994 * 119.58392 * 179.97438 * 9 8 7 38 38 H 0.97007 * 120.00072 * 0.02562 * 13 11 2 39 39 H 1.09004 * 109.46756 * 300.00004 * 14 13 11 40 40 H 1.08996 * 109.47119 * 60.00117 * 14 13 11 41 41 H 1.09004 * 110.03288 * 238.56709 * 17 15 14 42 42 H 1.09000 * 110.03128 * 359.95081 * 17 15 14 43 43 H 1.08995 * 110.48805 * 142.28491 * 18 17 15 44 44 H 1.08992 * 110.48624 * 264.93271 * 18 17 15 45 45 H 0.96996 * 120.00123 * 93.54817 * 21 19 18 46 46 H 0.96998 * 120.00134 * 179.97438 * 25 24 22 47 47 H 1.08997 * 110.49079 * 335.77852 * 30 15 14 48 48 H 1.09004 * 110.48336 * 98.42713 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 0.0830 2.2741 6 6 2.6737 -0.5148 3.4399 7 6 2.8785 0.2680 4.5625 8 6 2.6121 1.6279 4.4790 9 6 2.1538 2.1545 3.2880 10 7 1.9671 1.3821 2.2344 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1214 13 7 1.7919 -0.1943 -2.4520 14 6 2.2799 -0.8852 -3.6481 15 6 1.8757 -0.0946 -4.8942 16 1 0.7977 0.0669 -4.9002 17 6 2.6113 1.2565 -4.9229 18 6 3.4609 1.2685 -6.2105 19 6 2.7497 0.2578 -7.1443 20 1 1.8883 0.7186 -7.6277 21 7 3.6818 -0.2709 -8.1432 22 6 3.8834 0.4050 -9.3169 23 1 3.3554 1.3280 -9.5062 24 6 4.7670 -0.0957 -10.2632 25 7 5.4108 -1.2203 -10.0324 26 14 5.0424 0.8266 -11.8641 27 1 5.5646 2.1852 -11.5692 28 1 6.0248 0.0885 -12.6979 29 1 3.7564 0.9391 -12.5982 30 6 2.3039 -0.8567 -6.1653 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.8742 -1.5756 3.4685 35 1 3.2367 -0.1692 5.4828 36 1 2.7609 2.2669 5.3368 37 1 1.9446 3.2116 3.2179 38 1 1.2957 0.6347 -2.5392 39 1 3.3662 -0.9637 -3.6046 40 1 1.8449 -1.8835 -3.6939 41 1 1.8903 2.0738 -4.9437 42 1 3.2556 1.3495 -4.0487 43 1 3.4637 2.2631 -6.6564 44 1 4.4788 0.9414 -5.9989 45 1 4.1562 -1.0997 -7.9731 46 1 6.0280 -1.5703 -10.6938 47 1 3.1350 -1.5270 -5.9465 48 1 1.4624 -1.4129 -6.5783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264487083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:07 Heat of formation + Delta-G solvation = -35.361471 kcal Electronic energy + Delta-G solvation = -27570.928731 eV Core-core repulsion = 23626.086181 eV Total energy + Delta-G solvation = -3944.842549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15950 -39.99075 -38.45871 -37.75043 -34.97206 -33.51846 -32.92650 -32.45981 -30.76234 -30.31931 -28.95370 -27.29571 -25.43859 -24.41565 -23.86649 -23.12412 -22.86776 -20.69831 -19.70985 -19.41427 -18.91014 -17.85004 -17.09285 -16.76567 -16.36971 -16.11296 -16.03907 -15.66911 -15.03584 -14.88136 -14.78405 -14.27062 -13.88178 -13.84921 -13.60024 -13.53204 -13.26746 -12.88101 -12.79605 -12.65807 -12.40269 -12.20415 -12.14000 -11.85216 -11.50514 -11.13029 -10.87376 -10.77466 -10.59613 -10.55937 -10.38040 -10.28928 -10.16350 -10.06835 -9.95696 -9.77584 -9.63994 -9.18694 -8.91442 -8.85978 -6.93151 -5.75154 -3.03831 0.73280 0.83872 2.24040 2.41001 3.24991 3.36982 3.44586 3.48957 3.50157 3.83827 4.36085 4.43437 4.53648 4.59630 4.61263 4.66390 4.77488 4.78356 4.82749 4.92204 5.05152 5.18587 5.28890 5.30486 5.51853 5.52805 5.54149 5.66833 5.68750 5.71981 5.76879 5.88865 5.96333 5.98573 6.01645 6.04966 6.20226 6.32544 6.34582 6.45921 6.57226 6.71920 6.81585 6.87583 7.12637 7.28729 7.41754 7.71131 8.01727 8.43757 9.54450 10.13475 10.47513 11.47433 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027800 B = 0.001722 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.965858 B =16253.761709 C =16409.591030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.114 0.886 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.521 6.521 13 N -0.721 5.721 14 C 0.127 3.873 15 C -0.100 4.100 16 H 0.074 0.926 17 C -0.121 4.121 18 C -0.144 4.144 19 C 0.177 3.823 20 H 0.053 0.947 21 N -0.721 5.721 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.121 4.121 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.401 0.599 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.070 0.930 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 6.400 30.481 33.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.297 3.703 12 O -0.396 6.396 13 N -0.374 5.374 14 C 0.005 3.995 15 C -0.119 4.119 16 H 0.093 0.907 17 C -0.159 4.159 18 C -0.184 4.184 19 C 0.066 3.934 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.160 4.160 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.980 5.777 29.536 32.036 hybrid contribution 0.431 0.531 -0.159 0.702 sum -10.549 6.309 29.377 31.845 Atomic orbital electron populations 1.22154 0.92296 1.03749 1.03849 1.22093 0.95815 0.98025 0.82818 0.86822 1.86397 1.79795 1.34340 1.17597 1.19909 0.91142 0.87412 0.87040 1.21123 1.06011 1.02378 0.91375 1.21444 0.93962 0.93443 0.97695 1.21998 1.05235 0.96245 1.00025 1.22434 0.92574 0.99214 0.87313 1.67259 1.22017 1.04729 1.32705 1.20185 0.80246 0.85612 0.84302 1.90757 1.39348 1.23035 1.86432 1.45931 1.58033 1.27960 1.05463 1.21616 0.99918 0.95749 0.82260 1.21963 1.00100 0.95959 0.93916 0.90719 1.22220 0.98756 0.95728 0.99218 1.23072 0.99532 1.00997 0.94833 1.21159 0.92222 0.91525 0.88462 0.92932 1.42377 1.49410 1.27769 1.16544 1.19202 1.20055 1.04097 0.93756 0.91260 1.24750 0.99807 0.97608 0.98835 1.69650 1.31537 1.21152 1.35779 0.86275 0.77465 0.78861 0.83615 1.21319 1.21714 1.21293 1.22570 1.01085 0.98553 0.93818 0.90793 0.90221 0.91147 0.83880 0.84061 0.84490 0.82273 0.76457 0.90968 0.91299 0.92380 0.92393 0.92596 0.91814 0.78185 0.93462 0.91147 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.49 37.16 0.35 -0.90 16 2 C 0.07 0.75 2.90 -27.89 -0.08 0.66 16 3 H 0.11 1.07 6.98 -51.92 -0.36 0.71 16 4 O -0.28 -3.37 9.30 -38.58 -0.36 -3.73 16 5 C 0.32 3.40 7.45 -17.12 -0.13 3.27 16 6 C -0.19 -1.59 10.04 -39.27 -0.39 -1.98 16 7 C -0.04 -0.24 10.17 -39.31 -0.40 -0.64 16 8 C -0.21 -1.18 10.11 -39.43 -0.40 -1.58 16 9 C 0.14 0.94 11.18 -17.56 -0.20 0.75 16 10 N -0.54 -5.12 8.65 -13.33 -0.12 -5.23 16 11 C 0.51 6.49 7.18 -10.99 -0.08 6.41 16 12 O -0.52 -8.99 16.51 -14.31 -0.24 -9.22 16 13 N -0.72 -7.49 5.26 -60.29 -0.32 -7.81 16 14 C 0.13 1.56 4.70 -4.04 -0.02 1.55 16 15 C -0.10 -1.22 2.98 -89.50 -0.27 -1.48 16 16 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.12 -1.55 6.13 -25.62 -0.16 -1.70 16 18 C -0.14 -2.48 6.51 -25.07 -0.16 -2.64 16 19 C 0.18 3.42 3.54 -65.93 -0.23 3.19 16 20 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 21 N -0.72 -18.02 5.25 -51.50 -0.27 -18.29 16 22 C -0.24 -6.66 9.98 -15.06 -0.15 -6.81 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 26 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C -0.12 -1.90 5.96 -25.07 -0.15 -2.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 36 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 37 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.40 3.01 8.09 -40.82 -0.33 2.68 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.71 7.58 -51.93 -0.39 0.32 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.38 10.24 7.72 -40.82 -0.32 9.93 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.07 1.17 7.73 -51.93 -0.40 0.77 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -34.71 398.50 -9.83 -44.54 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.68 Total: 8.38 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.56 Total: -4.45 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.02 Total: -58.94 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.59 Total: -12.95 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.71 -9.83 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264487083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.176 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds