Wall clock time and date at job start Tue Mar 31 2020 18:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.46981 * 2 1 4 4 C 1.46904 * 110.99999 * 73.80213 * 3 2 1 5 5 C 1.52998 * 109.47141 * 199.97894 * 4 3 2 6 6 N 1.46500 * 109.46830 * 174.72174 * 5 4 3 7 7 C 1.34780 * 119.99692 * 180.27604 * 6 5 4 8 8 O 1.21552 * 120.00026 * 359.72095 * 7 6 5 9 9 C 1.47846 * 120.00157 * 179.72158 * 7 6 5 10 10 C 1.39599 * 120.14489 * 353.76243 * 9 7 6 11 11 C 1.37934 * 119.85803 * 179.78659 * 10 9 7 12 12 C 1.38381 * 120.14147 * 0.48736 * 11 10 9 13 13 C 1.38338 * 120.29072 * 359.74625 * 12 11 10 14 14 C 1.37972 * 120.14953 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.07936 * 179.97438 * 14 13 12 16 16 C 1.46894 * 110.99991 * 197.75208 * 3 2 1 17 17 C 1.50704 * 109.47036 * 66.04950 * 16 3 2 18 18 O 1.21292 * 119.99672 * 359.97438 * 17 16 3 19 19 N 1.34777 * 120.00184 * 179.97438 * 17 16 3 20 20 C 1.37097 * 120.00042 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99539 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99937 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99880 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00115 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47166 * 90.00264 * 24 22 20 26 26 H 1.48497 * 109.47084 * 209.99987 * 24 22 20 27 27 H 1.48494 * 109.47092 * 330.00156 * 24 22 20 28 28 H 1.09001 * 109.46716 * 294.21364 * 1 2 3 29 29 H 1.09001 * 109.47198 * 54.21039 * 1 2 3 30 30 H 1.09002 * 109.46858 * 174.21591 * 1 2 3 31 31 H 1.08993 * 109.46991 * 240.00370 * 2 1 3 32 32 H 1.09005 * 109.46960 * 119.99946 * 2 1 3 33 33 H 1.09010 * 109.47046 * 79.97710 * 4 3 2 34 34 H 1.09003 * 109.46946 * 319.98360 * 4 3 2 35 35 H 1.09000 * 109.47264 * 54.71876 * 5 4 3 36 36 H 1.08995 * 109.47068 * 294.71882 * 5 4 3 37 37 H 0.96999 * 120.00483 * 359.97438 * 6 5 4 38 38 H 1.08007 * 120.06938 * 359.97438 * 10 9 7 39 39 H 1.07994 * 119.93197 * 180.24962 * 11 10 9 40 40 H 1.07997 * 119.85605 * 179.76329 * 12 11 10 41 41 H 1.08008 * 119.92766 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.47382 * 263.03892 * 15 14 13 43 43 H 1.08996 * 109.47136 * 23.03492 * 15 14 13 44 44 H 1.09001 * 109.47496 * 143.03861 * 15 14 13 45 45 H 1.08995 * 109.47597 * 186.04575 * 16 3 2 46 46 H 1.09003 * 109.47548 * 306.05080 * 16 3 2 47 47 H 0.96996 * 119.99713 * 359.97438 * 19 17 16 48 48 H 0.96991 * 120.00131 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8344 2.0089 1.3170 5 6 1.8735 3.5313 1.1702 6 7 1.5639 4.1543 2.4595 7 6 1.5349 5.4973 2.5693 8 8 1.7705 6.1915 1.5998 9 6 1.2164 6.1260 3.8689 10 6 0.8185 5.3379 4.9503 11 6 0.5271 5.9303 6.1613 12 6 0.6186 7.3038 6.3029 13 6 1.0076 8.0910 5.2340 14 6 1.3064 7.5107 4.0185 15 6 1.7294 8.3698 2.8549 16 6 3.4265 1.4460 -0.4181 17 6 3.5405 1.0255 -1.8608 18 8 2.5474 0.7060 -2.4796 19 7 4.7458 1.0045 -2.4635 20 6 4.8495 0.6215 -3.7758 21 1 3.9651 0.3370 -4.3267 22 6 6.0922 0.5993 -4.3969 23 7 6.1915 0.2326 -5.6550 24 14 7.6217 1.0907 -3.4438 25 1 8.2040 -0.1086 -2.7898 26 1 8.6175 1.6792 -4.3750 27 1 7.2595 2.0921 -2.4089 28 1 -0.3633 0.4215 0.9373 29 1 -0.3634 0.6010 -0.8336 30 1 -0.3633 -1.0225 -0.1036 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6324 1.6878 1.9867 34 1 0.8712 1.7081 1.7293 35 1 1.1375 3.8439 0.4295 36 1 2.8677 3.8397 0.8471 37 1 1.3755 3.6003 3.2331 38 1 0.7421 4.2662 4.8397 39 1 0.2231 5.3213 6.9998 40 1 0.3856 7.7631 7.2522 41 1 1.0774 9.1625 5.3511 42 1 0.8674 8.5697 2.2184 43 1 2.1327 9.3118 3.2265 44 1 2.4941 7.8496 2.2781 45 1 3.7948 2.4658 -0.3068 46 1 4.0198 0.7755 0.2036 47 1 5.5399 1.2604 -1.9687 48 1 7.0589 0.2175 -6.0887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267234926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:49 Heat of formation + Delta-G solvation = -58.631653 kcal Electronic energy + Delta-G solvation = -27865.013193 eV Core-core repulsion = 23919.161573 eV Total energy + Delta-G solvation = -3945.851620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40331 -40.58857 -39.33834 -38.36337 -36.15335 -35.76185 -33.76433 -33.51086 -32.66314 -31.89720 -30.31006 -28.19478 -27.59557 -25.86663 -24.76584 -23.68278 -22.34911 -22.19576 -21.43997 -21.15972 -20.19298 -18.79117 -17.88291 -17.31429 -17.06834 -16.67044 -16.56099 -16.33014 -16.25052 -15.81877 -15.78478 -15.48513 -15.09164 -15.04426 -14.79893 -14.39567 -14.25577 -14.20141 -14.02052 -13.90749 -13.59315 -13.10136 -13.02642 -12.96269 -12.84352 -12.67369 -12.63015 -12.55636 -12.41932 -12.05441 -11.99219 -11.96880 -11.75883 -11.41563 -10.71844 -10.34964 -10.23261 -10.22031 -9.87499 -9.63286 -9.23643 -8.41206 -6.01433 -0.10621 0.41978 1.29423 1.33994 1.43081 1.87341 1.96154 1.98410 2.22291 2.71792 2.88213 3.15034 3.22357 3.70956 3.82806 3.90421 3.93825 4.04189 4.09374 4.18251 4.24416 4.33357 4.42143 4.42514 4.51389 4.55011 4.58326 4.71740 4.73993 4.77556 4.81249 4.84758 4.91761 5.01047 5.06526 5.20801 5.24478 5.36761 5.40840 5.44114 5.52611 5.53859 5.62176 5.90364 5.98599 6.03710 6.19436 6.51673 6.60117 6.89063 7.20247 7.40455 7.97861 8.76494 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.002289 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.265345 B =12229.746146 C =13506.185351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 N -0.538 5.538 4 C 0.053 3.947 5 C 0.128 3.872 6 N -0.708 5.708 7 C 0.549 3.451 8 O -0.572 6.572 9 C -0.162 4.162 10 C -0.081 4.081 11 C -0.135 4.135 12 C -0.087 4.087 13 C -0.139 4.139 14 C -0.046 4.046 15 C -0.119 4.119 16 C 0.052 3.948 17 C 0.451 3.549 18 O -0.602 6.602 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.056 0.944 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.235 1.235 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.415 0.585 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.388 0.612 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 10.983 33.471 36.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.263 5.263 4 C -0.074 4.074 5 C 0.004 3.996 6 N -0.362 5.362 7 C 0.338 3.662 8 O -0.453 6.453 9 C -0.165 4.165 10 C -0.100 4.100 11 C -0.153 4.153 12 C -0.105 4.105 13 C -0.156 4.156 14 C -0.047 4.047 15 C -0.175 4.175 16 C -0.079 4.079 17 C 0.239 3.761 18 O -0.485 6.485 19 N -0.236 5.236 20 C -0.454 4.454 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.158 1.158 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.162 0.838 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.102 0.898 47 H 0.223 0.777 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.087 11.432 31.824 35.015 hybrid contribution 1.345 -0.529 -0.067 1.447 sum -7.742 10.902 31.757 34.458 Atomic orbital electron populations 1.21661 0.93950 1.01679 1.01875 1.22111 0.97109 0.87562 1.00665 1.61320 1.17345 1.19753 1.27906 1.22258 1.03895 0.91979 0.89294 1.21150 1.00709 0.92920 0.84848 1.45639 1.71264 1.06036 1.13242 1.18718 0.76517 0.82350 0.88570 1.90751 1.50788 1.62840 1.40881 1.19807 1.08418 0.94479 0.93803 1.21592 0.95837 1.00578 0.91954 1.21498 1.00469 0.95503 0.97813 1.21776 0.95248 0.94173 0.99349 1.21331 1.00946 1.01415 0.91945 1.20232 0.95399 0.92762 0.96342 1.20983 1.02040 0.98699 0.95761 1.21880 0.90989 1.03540 0.91514 1.20878 0.82751 0.82095 0.90406 1.90535 1.37503 1.52833 1.67676 1.42063 1.08366 1.62118 1.11101 1.18983 0.95435 1.43602 0.87346 0.92620 1.26102 1.01798 0.96804 0.96815 1.69802 1.26790 1.48206 1.12774 0.85381 0.77250 0.79981 0.79026 1.17890 1.20109 1.15808 0.90822 0.94364 0.91673 0.92885 0.92783 0.91327 0.87853 0.92874 0.92576 0.74685 0.83152 0.82418 0.82719 0.83770 0.91866 0.90599 0.91231 0.87218 0.89812 0.77660 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.91 71.98 0.71 -2.61 16 2 C 0.05 1.50 5.21 86.30 0.45 1.95 16 3 N -0.54 -15.47 4.11 -900.77 -3.71 -19.18 16 4 C 0.05 1.00 4.93 86.30 0.43 1.42 16 5 C 0.13 2.89 5.71 86.38 0.49 3.38 16 6 N -0.71 -12.59 5.51 -465.98 -2.57 -15.16 16 7 C 0.55 13.02 7.70 86.79 0.67 13.69 16 8 O -0.57 -18.50 13.35 -3.88 -0.05 -18.55 16 9 C -0.16 -3.02 5.87 -20.09 -0.12 -3.14 16 10 C -0.08 -0.91 9.53 22.53 0.21 -0.70 16 11 C -0.14 -1.11 10.03 22.23 0.22 -0.89 16 12 C -0.09 -0.77 10.04 22.33 0.22 -0.55 16 13 C -0.14 -1.78 9.66 22.23 0.21 -1.56 16 14 C -0.05 -0.87 5.91 -19.61 -0.12 -0.99 16 15 C -0.12 -2.48 8.72 71.24 0.62 -1.86 16 16 C 0.05 1.61 5.27 85.56 0.45 2.06 16 17 C 0.45 20.66 7.32 87.66 0.64 21.30 16 18 O -0.60 -33.44 14.08 -3.07 -0.04 -33.48 16 19 N -0.59 -28.62 5.09 -306.98 -1.56 -30.18 16 20 C -0.32 -19.31 10.16 84.04 0.85 -18.46 16 21 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.93 -57.27 13.96 21.66 0.30 -56.97 16 24 Si 0.96 39.74 27.74 68.60 1.90 41.64 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.23 -8.29 6.52 99.48 0.65 -7.65 16 28 H 0.07 1.35 6.81 -2.39 -0.02 1.33 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.05 2.02 5.82 -2.39 -0.01 2.01 16 32 H 0.05 1.20 8.03 -2.38 -0.02 1.18 16 33 H 0.07 0.96 8.00 -2.38 -0.02 0.94 16 34 H 0.10 1.51 6.44 -2.39 -0.02 1.49 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.43 6.97 -2.39 -0.02 1.41 16 37 H 0.41 4.09 6.55 -92.71 -0.61 3.48 16 38 H 0.15 0.78 6.46 -2.91 -0.02 0.76 16 39 H 0.16 0.35 8.06 -2.91 -0.02 0.32 16 40 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 44 H 0.07 1.84 5.88 -2.39 -0.01 1.82 16 45 H 0.11 3.03 6.74 -2.39 -0.02 3.01 16 46 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 47 H 0.39 15.60 5.76 -92.71 -0.53 15.06 16 48 H 0.28 15.60 8.31 -92.72 -0.77 14.83 16 Total: -1.00 -85.23 388.10 0.50 -84.74 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -0.21 Total: 34.57 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.43 Total: 12.58 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -7.53 Total: -121.49 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.09 Total: -52.03 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.90 Total: 41.64 kcal Total: -85.23 0.50 -84.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267234926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.104 kcal (2) G-P(sol) polarization free energy of solvation -85.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds