Wall clock time and date at job start Tue Mar 31 2020 17:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47234 * 2 1 4 4 O 1.42898 * 109.47348 * 120.00227 * 2 1 3 5 5 C 1.35675 * 117.00002 * 270.00122 * 4 2 1 6 6 C 1.38917 * 119.68763 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.11432 * 179.97438 * 6 5 4 8 8 C 1.38830 * 118.48336 * 359.97438 * 7 6 5 9 9 C 1.38045 * 119.28784 * 0.02562 * 8 7 6 10 10 N 1.31963 * 120.83851 * 359.74392 * 9 8 7 11 11 C 1.50708 * 109.47403 * 240.00198 * 2 1 3 12 12 O 1.21281 * 119.99841 * 245.00241 * 11 2 1 13 13 N 1.34775 * 119.99940 * 64.99606 * 11 2 1 14 14 C 1.46494 * 119.99984 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.47157 * 175.61880 * 14 13 11 16 16 N 1.46498 * 110.54148 * 57.61957 * 15 14 13 17 17 C 1.36933 * 120.00105 * 59.23302 * 16 15 14 18 18 H 1.07999 * 120.00030 * 5.42936 * 17 16 15 19 19 C 1.38807 * 120.00236 * 185.43956 * 17 16 15 20 20 N 1.31617 * 120.00435 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47198 * 90.00269 * 21 19 17 23 23 H 1.48497 * 109.47332 * 210.00617 * 21 19 17 24 24 H 1.48501 * 109.47292 * 330.00763 * 21 19 17 25 25 C 1.54891 * 110.48661 * 180.23354 * 15 14 13 26 26 C 1.54891 * 102.75035 * 156.61710 * 25 15 14 27 27 C 1.54273 * 104.19570 * 322.06047 * 26 25 15 28 28 C 1.53872 * 106.59593 * 23.60465 * 27 26 25 29 29 H 1.09003 * 109.46614 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47427 * 299.99700 * 1 2 3 31 31 H 1.09004 * 109.47100 * 60.00361 * 1 2 3 32 32 H 1.08002 * 120.44600 * 359.95302 * 6 5 4 33 33 H 1.07996 * 120.75691 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.35340 * 180.02562 * 8 7 6 35 35 H 1.08002 * 119.57754 * 180.02562 * 9 8 7 36 36 H 0.96997 * 119.99888 * 0.02562 * 13 11 2 37 37 H 1.09001 * 109.47434 * 55.61418 * 14 13 11 38 38 H 1.09000 * 109.47261 * 295.61518 * 14 13 11 39 39 H 0.96997 * 119.99859 * 239.22503 * 16 15 14 40 40 H 0.97003 * 120.00599 * 179.97438 * 20 19 17 41 41 H 1.08993 * 110.75727 * 274.93225 * 25 15 14 42 42 H 1.09000 * 110.75921 * 38.30588 * 25 15 14 43 43 H 1.08998 * 110.48936 * 203.38272 * 26 25 15 44 44 H 1.08998 * 110.48872 * 80.73186 * 26 25 15 45 45 H 1.09003 * 110.02934 * 264.32397 * 27 26 25 46 46 H 1.08997 * 110.03462 * 142.89377 * 27 26 25 47 47 H 1.09000 * 110.03339 * 240.71148 * 28 27 26 48 48 H 1.09009 * 110.02819 * 119.29099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2117 0.0828 2.2741 6 6 2.6737 -0.5150 3.4398 7 6 2.8795 0.2679 4.5621 8 6 2.6150 1.6282 4.4781 9 6 2.1576 2.1548 3.2869 10 7 1.9752 1.3834 2.2319 11 6 2.0324 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1942 -2.4520 14 6 2.2798 -0.8850 -3.6482 15 6 1.7826 -0.1547 -4.8973 16 7 2.2236 1.2423 -4.8858 17 6 3.5599 1.5381 -4.8433 18 1 4.2908 0.7454 -4.9067 19 6 3.9753 2.8566 -4.7184 20 7 5.2598 3.1409 -4.6770 21 14 2.7113 4.2277 -4.6091 22 1 2.3595 4.4643 -3.1859 23 1 3.2774 5.4705 -5.1924 24 1 1.4921 3.8381 -5.3621 25 6 2.2808 -0.8699 -6.1777 26 6 1.2493 -0.4220 -7.2428 27 6 -0.0941 -0.4046 -6.4846 28 6 0.2450 -0.2348 -4.9934 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.8694 -1.5767 3.4699 33 1 3.2386 -0.1692 5.4821 34 1 2.7654 2.2674 5.3355 35 1 1.9507 3.2125 3.2161 36 1 1.2958 0.6348 -2.5391 37 1 1.9072 -1.9093 -3.6537 38 1 3.3698 -0.8949 -3.6429 39 1 1.5690 1.9577 -4.9084 40 1 5.5501 4.0624 -4.5901 41 1 3.2823 -0.5322 -6.4440 42 1 2.2583 -1.9521 -6.0494 43 1 1.2143 -1.1373 -8.0645 44 1 1.4912 0.5742 -7.6130 45 1 -0.6241 -1.3440 -6.6423 46 1 -0.7049 0.4310 -6.8262 47 1 -0.1204 -1.0916 -4.4274 48 1 -0.2013 0.6834 -4.6112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268041086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:55 Heat of formation + Delta-G solvation = -50.616306 kcal Electronic energy + Delta-G solvation = -29286.451295 eV Core-core repulsion = 25340.947247 eV Total energy + Delta-G solvation = -3945.504049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84220 -40.92129 -39.80262 -38.65305 -35.66236 -35.21128 -33.54519 -33.29287 -32.66440 -31.03528 -29.78692 -29.56999 -26.52309 -25.56844 -24.86634 -24.43807 -23.60755 -21.71238 -21.06281 -20.27675 -19.57987 -19.50295 -18.69737 -17.48383 -17.23018 -16.95881 -16.72263 -16.51203 -16.27996 -16.01414 -15.79992 -15.48900 -15.28953 -14.79755 -14.68151 -14.48496 -14.34393 -14.06909 -13.96845 -13.72764 -13.41334 -13.33632 -12.99706 -12.92643 -12.79680 -12.43835 -12.34031 -12.21172 -11.99366 -11.92200 -11.87826 -11.64307 -11.46490 -11.17998 -11.02911 -10.92463 -10.80465 -10.58760 -10.05687 -9.51322 -9.29112 -7.96394 -5.30861 0.18479 0.31768 1.38301 1.42791 1.45053 1.50206 1.55613 2.51909 2.52243 2.81177 3.27206 3.32918 3.50849 3.59370 3.75307 3.85249 3.89556 3.97796 4.04176 4.05430 4.10360 4.22102 4.35563 4.42301 4.56050 4.64901 4.65914 4.66324 4.72998 4.79152 4.84790 4.93306 5.03328 5.03545 5.06127 5.09743 5.20329 5.21036 5.26548 5.38722 5.41594 5.48949 5.53424 5.65922 5.86195 6.15769 6.26736 6.50297 6.85645 7.13823 7.14472 7.87192 8.07723 9.25530 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.003511 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.291817 B = 7972.567784 C = 9291.826937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 H 0.106 0.894 4 O -0.302 6.302 5 C 0.290 3.710 6 C -0.204 4.204 7 C -0.035 4.035 8 C -0.203 4.203 9 C 0.123 3.877 10 N -0.565 5.565 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.689 5.689 14 C 0.129 3.871 15 C 0.188 3.812 16 N -0.731 5.731 17 C -0.208 4.208 18 H 0.049 0.951 19 C -0.065 4.065 20 N -0.989 5.989 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.307 1.307 24 H -0.243 1.243 25 C -0.131 4.131 26 C -0.112 4.112 27 C -0.113 4.113 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.409 0.591 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.369 0.631 40 H 0.253 0.747 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 -4.564 13.796 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 H 0.123 0.877 4 O -0.209 6.209 5 C 0.112 3.888 6 C -0.224 4.224 7 C -0.061 4.061 8 C -0.222 4.222 9 C -0.032 4.032 10 N -0.289 5.289 11 C 0.295 3.705 12 O -0.457 6.457 13 N -0.339 5.339 14 C 0.003 3.997 15 C 0.097 3.903 16 N -0.374 5.374 17 C -0.339 4.339 18 H 0.067 0.933 19 C -0.256 4.256 20 N -0.640 5.640 21 Si 0.778 3.222 22 H -0.204 1.204 23 H -0.234 1.234 24 H -0.167 1.167 25 C -0.171 4.171 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.158 4.158 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.195 0.805 34 H 0.191 0.809 35 H 0.199 0.801 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.203 0.797 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.478 -5.260 13.023 20.900 hybrid contribution 0.606 1.262 0.355 1.445 sum -14.872 -3.998 13.378 20.399 Atomic orbital electron populations 1.22095 0.89725 1.03894 1.04964 1.22066 0.97602 0.96950 0.81671 0.87670 1.86317 1.80670 1.35553 1.18324 1.20254 0.93253 0.88037 0.87268 1.21368 1.06433 1.03006 0.91641 1.21882 0.92790 0.93506 0.97878 1.22411 1.03037 0.96514 1.00283 1.23018 0.92631 1.00191 0.87390 1.67229 1.22798 1.04745 1.34166 1.20650 0.79466 0.85082 0.85322 1.90662 1.42136 1.25740 1.87191 1.45540 1.56365 1.27513 1.04529 1.21722 0.97620 0.95621 0.84702 1.20843 0.94270 0.83774 0.91370 1.42710 1.03030 1.02274 1.89421 1.18751 0.83637 0.92204 1.39315 0.93345 1.25455 0.97331 0.99746 1.03036 1.69908 1.15613 1.18524 1.59966 0.85485 0.79710 0.78757 0.78239 1.20438 1.23444 1.16749 1.22834 0.98828 0.99449 0.95992 1.22189 0.94751 1.00562 0.97438 1.22069 0.96677 1.02600 0.93703 1.22411 0.92269 1.03005 0.98068 0.91153 0.90324 0.88318 0.83611 0.80532 0.80930 0.80075 0.75452 0.90695 0.95662 0.79670 0.93794 0.94199 0.90530 0.90682 0.93526 0.89932 0.91366 0.89454 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.49 71.98 0.68 -2.72 16 2 C 0.08 2.43 2.90 29.85 0.09 2.52 16 3 H 0.11 3.47 6.98 -2.39 -0.02 3.45 16 4 O -0.30 -10.32 9.30 -70.94 -0.66 -10.98 16 5 C 0.29 8.54 7.46 84.79 0.63 9.17 16 6 C -0.20 -4.69 10.04 22.47 0.23 -4.47 16 7 C -0.04 -0.55 10.17 22.45 0.23 -0.32 16 8 C -0.20 -2.94 10.11 22.37 0.23 -2.71 16 9 C 0.12 2.42 11.17 84.63 0.95 3.36 16 10 N -0.57 -15.54 8.64 -308.95 -2.67 -18.21 16 11 C 0.51 19.05 7.18 87.66 0.63 19.68 16 12 O -0.58 -26.34 16.51 15.96 0.26 -26.08 16 13 N -0.69 -23.61 5.21 -463.07 -2.41 -26.02 16 14 C 0.13 4.73 4.30 86.38 0.37 5.10 16 15 C 0.19 6.30 0.52 4.68 0.00 6.30 16 16 N -0.73 -30.25 4.50 -298.51 -1.34 -31.59 16 17 C -0.21 -11.19 9.07 84.03 0.76 -10.43 16 18 H 0.05 2.99 7.35 -2.91 -0.02 2.97 16 19 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 20 N -0.99 -63.43 13.97 21.65 0.30 -63.13 16 21 Si 0.95 43.55 27.79 68.60 1.91 45.46 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 24 H -0.24 -9.64 6.45 99.48 0.64 -9.00 16 25 C -0.13 -4.33 5.89 31.89 0.19 -4.14 16 26 C -0.11 -3.06 6.79 31.67 0.22 -2.85 16 27 C -0.11 -2.48 6.80 31.32 0.21 -2.26 16 28 C -0.12 -2.91 5.70 31.32 0.18 -2.73 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.80 7.93 -2.39 -0.02 1.78 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.41 12.51 7.85 -92.71 -0.73 11.78 16 37 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 38 H 0.02 1.15 7.52 -2.39 -0.02 1.13 16 39 H 0.37 14.43 5.32 -92.71 -0.49 13.93 16 40 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.04 1.62 7.17 -2.39 -0.02 1.60 16 42 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 1.83 7.80 -2.39 -0.02 1.82 16 48 H 0.07 1.67 7.75 -2.38 -0.02 1.65 16 Total: -1.00 -79.28 390.87 1.13 -78.16 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.31 Total: 42.14 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.05 Total: 10.26 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -6.12 Total: -138.96 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.40 Total: -37.06 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.91 Total: 45.46 kcal Total: -79.28 1.13 -78.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268041086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.541 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds