Wall clock time and date at job start Tue Mar 31 2020 17:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47551 * 2 1 4 4 O 1.42900 * 109.47045 * 239.99530 * 2 1 3 5 5 C 1.42901 * 114.00054 * 90.00325 * 4 2 1 6 6 C 1.50692 * 109.47218 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.79198 * 269.71696 * 6 5 4 8 8 C 1.38205 * 119.16377 * 179.80215 * 7 6 5 9 9 N 1.31865 * 120.76424 * 0.48511 * 8 7 6 10 10 C 1.31875 * 121.72548 * 359.74912 * 9 8 7 11 11 C 1.38208 * 120.76353 * 0.02562 * 10 9 8 12 12 C 1.50705 * 109.46891 * 120.00005 * 2 1 3 13 13 O 1.21287 * 119.99937 * 119.99602 * 12 2 1 14 14 N 1.34777 * 119.99757 * 299.99960 * 12 2 1 15 15 C 1.46499 * 119.99709 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.47055 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.47276 * 179.97438 * 16 15 14 18 18 C 1.36939 * 120.00350 * 270.00279 * 17 16 15 19 19 H 1.07995 * 119.99991 * 144.92930 * 18 17 16 20 20 C 1.38811 * 119.99666 * 324.92272 * 18 17 16 21 21 N 1.31618 * 120.00130 * 337.93845 * 20 18 17 22 22 Si 1.86795 * 119.99783 * 157.93531 * 20 18 17 23 23 H 1.48504 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46953 * 119.99956 * 22 20 18 25 25 H 1.48504 * 109.47404 * 240.00142 * 22 20 18 26 26 C 1.46503 * 119.99876 * 89.99732 * 17 16 15 27 27 C 1.53004 * 117.50085 * 183.23906 * 26 17 16 28 28 C 1.52999 * 117.49647 * 114.57737 * 26 17 16 29 29 H 1.09006 * 109.47139 * 300.00304 * 1 2 3 30 30 H 1.09001 * 109.47031 * 59.99549 * 1 2 3 31 31 H 1.09000 * 109.47551 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46930 * 300.00614 * 5 4 2 33 33 H 1.09007 * 109.46647 * 59.99586 * 5 4 2 34 34 H 1.08005 * 120.41643 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.61833 * 180.20871 * 8 7 6 36 36 H 1.08001 * 119.61641 * 180.02562 * 10 9 8 37 37 H 1.07996 * 120.41736 * 179.97438 * 11 10 9 38 38 H 0.96993 * 120.00409 * 359.97438 * 14 12 2 39 39 H 1.09003 * 109.47721 * 59.99114 * 15 14 12 40 40 H 1.09006 * 109.47159 * 299.99605 * 15 14 12 41 41 H 1.09000 * 109.47119 * 299.99522 * 16 15 14 42 42 H 1.08999 * 109.47373 * 59.99686 * 16 15 14 43 43 H 0.96999 * 119.99868 * 175.91022 * 21 20 18 44 44 H 1.09003 * 115.55309 * 328.91312 * 26 17 16 45 45 H 1.08995 * 117.49606 * 0.02562 * 27 26 17 46 46 H 1.08997 * 117.50031 * 145.02545 * 27 26 17 47 47 H 1.08999 * 117.50194 * 214.97937 * 28 26 17 48 48 H 1.08998 * 117.50147 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1827 -2.2941 6 6 2.7014 -0.6284 -3.4609 7 6 4.0604 -0.8068 -3.6697 8 6 4.4829 -1.5606 -4.7483 9 7 3.6107 -2.0986 -5.5782 10 6 2.3113 -1.9459 -5.4133 11 6 1.8147 -1.2091 -4.3547 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7066 -0.2499 2.4546 15 6 2.1953 -0.9402 3.6508 16 6 1.6857 -0.2187 4.9000 17 7 2.1740 -0.9093 6.0962 18 6 1.4337 -1.9165 6.6555 19 1 1.9285 -2.7636 7.1070 20 6 0.0473 -1.8484 6.6421 21 7 -0.5533 -0.6849 6.5080 22 14 -0.9660 -3.4082 6.8145 23 1 -0.0584 -4.5756 6.9509 24 1 -1.8275 -3.3081 8.0200 25 1 -1.8177 -3.5808 5.6103 26 6 3.4543 -0.5225 6.6940 27 6 3.9456 -1.3312 7.8964 28 6 3.4226 0.0939 8.0940 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2538 0.6546 -2.5588 33 1 2.9320 0.9512 -2.0449 34 1 4.7797 -0.3652 -2.9958 35 1 5.5397 -1.7070 -4.9159 36 1 1.6272 -2.4021 -6.1137 37 1 0.7494 -1.0874 -4.2253 38 1 1.1493 0.5389 2.5436 39 1 3.2854 -0.9400 3.6507 40 1 1.8323 -1.9681 3.6510 41 1 2.0491 0.8090 4.8996 42 1 0.5958 -0.2186 4.9004 43 1 -1.5199 -0.6432 6.4391 44 1 4.2052 -0.1502 5.9972 45 1 3.3165 -2.1512 8.2423 46 1 5.0197 -1.4906 7.9907 47 1 4.1530 0.8713 8.3184 48 1 2.4492 0.2120 8.5701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493412818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:18 Heat of formation + Delta-G solvation = -15.896703 kcal Electronic energy + Delta-G solvation = -27802.016430 eV Core-core repulsion = 23858.017936 eV Total energy + Delta-G solvation = -3943.998494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.24129 -40.86672 -38.99556 -38.59256 -36.30770 -35.04734 -34.44462 -32.93265 -32.15919 -31.96056 -29.25200 -27.87660 -26.46594 -25.05560 -24.42536 -23.36637 -22.97551 -22.86569 -21.62070 -21.36544 -18.78926 -18.20102 -18.05678 -17.51636 -17.40178 -17.26158 -16.79518 -16.56223 -16.48236 -16.10724 -15.82600 -15.48974 -15.23814 -14.80150 -14.58847 -14.47516 -14.41160 -14.17012 -13.78052 -13.65318 -13.35447 -13.26164 -12.97421 -12.94617 -12.64042 -12.52662 -12.48145 -12.28768 -12.12464 -11.91921 -11.66602 -11.39299 -11.11055 -10.93241 -10.76235 -10.51641 -10.50658 -10.47952 -10.10117 -10.06145 -8.58463 -7.85382 -5.48758 0.12637 0.18614 1.40410 1.46157 1.54395 1.57537 1.90081 2.46663 2.70142 3.07876 3.13053 3.39526 3.49378 3.57353 3.68879 3.76258 3.79894 3.94611 4.06616 4.11252 4.19363 4.29453 4.36688 4.39167 4.39847 4.43230 4.51022 4.60497 4.68177 4.69990 4.78149 4.82300 4.87395 4.94143 4.97749 5.03700 5.20088 5.22726 5.31647 5.33843 5.45028 5.54329 5.66430 5.74239 5.75765 6.01497 6.41635 6.61012 6.98599 7.10864 7.26117 7.79787 8.28563 9.06577 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.002195 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.179117 B =12752.957783 C =13483.248435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.080 3.920 3 H 0.127 0.873 4 O -0.383 6.383 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.160 4.160 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.155 4.155 12 C 0.502 3.498 13 O -0.583 6.583 14 N -0.706 5.706 15 C 0.121 3.879 16 C 0.144 3.856 17 N -0.565 5.565 18 C -0.261 4.261 19 H 0.057 0.943 20 C -0.030 4.030 21 N -0.905 5.905 22 Si 0.945 3.055 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.098 3.902 27 C -0.187 4.187 28 C -0.210 4.210 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.158 0.842 38 H 0.414 0.586 39 H 0.046 0.954 40 H 0.028 0.972 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.253 0.747 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 8.654 -19.695 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 H 0.144 0.856 4 O -0.302 6.302 5 C 0.019 3.981 6 C -0.069 4.069 7 C -0.180 4.180 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.174 4.174 12 C 0.288 3.712 13 O -0.462 6.462 14 N -0.359 5.359 15 C -0.005 4.005 16 C 0.017 3.983 17 N -0.283 5.283 18 C -0.391 4.391 19 H 0.075 0.925 20 C -0.228 4.228 21 N -0.549 5.549 22 Si 0.774 3.226 23 H -0.200 1.200 24 H -0.216 1.216 25 H -0.214 1.214 26 C -0.009 4.009 27 C -0.225 4.225 28 C -0.251 4.251 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.175 0.825 38 H 0.251 0.749 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.130 0.870 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.122 0.878 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.277 7.307 -20.422 22.108 hybrid contribution -1.222 -0.124 1.256 1.757 sum 3.055 7.183 -19.166 20.695 Atomic orbital electron populations 1.22266 0.91714 1.03205 1.05320 1.21989 0.96164 0.96945 0.82996 0.85565 1.88095 1.86994 1.35482 1.19583 1.21639 1.02000 0.91298 0.83157 1.20283 0.94023 0.97218 0.95332 1.22351 0.96422 0.99962 0.99230 1.23144 1.00641 0.93013 0.90529 1.67688 1.04359 1.20499 1.29525 1.23224 0.91916 0.95425 0.96765 1.22370 1.02115 0.97621 0.95312 1.21237 0.79819 0.84536 0.85568 1.90691 1.39856 1.28298 1.87346 1.45828 1.53182 1.32190 1.04729 1.21814 0.97658 0.96082 0.84948 1.20977 1.01793 0.92754 0.82745 1.43433 1.19095 1.39634 1.26129 1.19216 0.88166 0.97502 1.34259 0.92534 1.25627 0.98151 0.98251 1.00727 1.70113 1.08748 1.23413 1.52608 0.85570 0.78911 0.81116 0.77027 1.20014 1.21628 1.21407 1.21546 0.89783 1.01532 0.88084 1.23058 1.00422 0.94797 1.04237 1.23268 1.01051 0.95854 1.04897 0.89325 0.88227 0.93363 0.88924 0.90133 0.83432 0.80745 0.80385 0.82456 0.74871 0.93578 0.95316 0.93200 0.89877 0.93706 0.87037 0.90794 0.87264 0.87792 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.42 71.98 0.68 -2.11 16 2 C 0.08 1.68 3.14 29.85 0.09 1.77 16 3 H 0.13 1.65 7.79 -2.39 -0.02 1.63 16 4 O -0.38 -9.41 9.50 -129.94 -1.23 -10.64 16 5 C 0.09 1.46 5.92 71.23 0.42 1.88 16 6 C -0.06 -1.10 5.55 -19.67 -0.11 -1.21 16 7 C -0.16 -2.93 9.82 22.36 0.22 -2.71 16 8 C 0.08 1.56 11.18 84.68 0.95 2.51 16 9 N -0.51 -10.96 10.36 -195.84 -2.03 -12.99 16 10 C 0.08 1.46 11.18 84.68 0.95 2.41 16 11 C -0.15 -2.53 9.82 22.36 0.22 -2.31 16 12 C 0.50 16.14 7.23 87.66 0.63 16.78 16 13 O -0.58 -25.33 16.50 15.99 0.26 -25.06 16 14 N -0.71 -21.62 5.45 -463.04 -2.52 -24.15 16 15 C 0.12 4.79 6.00 86.38 0.52 5.30 16 16 C 0.14 6.09 5.45 86.38 0.47 6.56 16 17 N -0.57 -26.69 2.78 -678.03 -1.88 -28.58 16 18 C -0.26 -13.79 8.63 84.03 0.73 -13.07 16 19 H 0.06 3.06 6.55 -2.91 -0.02 3.04 16 20 C -0.03 -1.58 4.96 84.86 0.42 -1.15 16 21 N -0.91 -49.22 11.33 21.65 0.25 -48.98 16 22 Si 0.95 43.88 29.61 68.60 2.03 45.91 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 C 0.10 3.96 6.56 44.99 0.30 4.26 16 27 C -0.19 -7.00 9.80 30.62 0.30 -6.70 16 28 C -0.21 -7.99 10.36 30.62 0.32 -7.67 16 29 H 0.09 1.27 7.57 -2.38 -0.02 1.25 16 30 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.89 7.83 -2.39 -0.02 0.87 16 33 H 0.08 0.96 8.04 -2.38 -0.02 0.94 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.41 9.77 7.89 -92.71 -0.73 9.04 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 42 H 0.08 3.98 5.35 -2.39 -0.01 3.97 16 43 H 0.25 13.28 8.32 -92.71 -0.77 12.51 16 44 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 45 H 0.07 3.13 6.37 -2.39 -0.02 3.12 16 46 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 48 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -74.54 402.75 2.20 -72.34 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.23 Total: 27.60 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 7.10 Total: 4.54 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -6.19 Total: -114.69 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.97 Total: -35.70 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.54 2.20 -72.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493412818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.446 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds