Wall clock time and date at job start Tue Mar 31 2020 18:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47267 * 2 1 4 4 C 1.46503 * 119.99706 * 277.48573 * 3 2 1 5 5 C 1.52997 * 109.47195 * 269.99729 * 4 3 2 6 6 N 1.46907 * 109.47041 * 180.02562 * 5 4 3 7 7 C 1.46895 * 110.99939 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47165 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00250 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99891 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99970 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99718 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00138 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99814 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99958 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47661 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47473 * 120.00011 * 15 13 11 18 18 H 1.48505 * 109.47271 * 239.99992 * 15 13 11 19 19 C 1.34777 * 120.00115 * 97.48503 * 3 2 1 20 20 O 1.21556 * 119.99653 * 185.75606 * 19 3 2 21 21 C 1.47847 * 119.99985 * 5.75480 * 19 3 2 22 22 C 1.39596 * 120.14485 * 314.47543 * 21 19 3 23 23 C 1.37933 * 119.84908 * 180.29476 * 22 21 19 24 24 C 1.38376 * 120.14621 * 359.45146 * 23 22 21 25 25 C 1.38334 * 120.29515 * 0.29707 * 24 23 22 26 26 C 1.50701 * 119.93268 * 180.02562 * 25 24 23 27 27 C 1.37982 * 120.14203 * 359.97438 * 25 24 23 28 28 H 1.09001 * 109.46927 * 309.34738 * 1 2 3 29 29 H 1.09002 * 109.47111 * 69.35034 * 1 2 3 30 30 H 1.09005 * 109.47211 * 189.34630 * 1 2 3 31 31 H 1.09000 * 109.46896 * 239.99582 * 2 1 3 32 32 H 1.08997 * 109.47129 * 120.00023 * 2 1 3 33 33 H 1.08997 * 109.47158 * 30.00286 * 4 3 2 34 34 H 1.09004 * 109.46836 * 149.99977 * 4 3 2 35 35 H 1.08992 * 109.47101 * 300.00143 * 5 4 3 36 36 H 1.08996 * 109.47325 * 60.00463 * 5 4 3 37 37 H 1.00899 * 111.00171 * 56.04816 * 6 5 4 38 38 H 1.08997 * 109.47335 * 300.00349 * 7 6 5 39 39 H 1.09007 * 109.46863 * 59.99836 * 7 6 5 40 40 H 0.96999 * 120.00125 * 0.02562 * 10 8 7 41 41 H 0.97003 * 119.99708 * 180.02562 * 14 13 11 42 42 H 1.08002 * 120.07153 * 0.04105 * 22 21 19 43 43 H 1.07998 * 119.92289 * 179.72601 * 23 22 21 44 44 H 1.08004 * 119.85665 * 180.27525 * 24 23 22 45 45 H 1.09007 * 109.47140 * 89.99778 * 26 25 24 46 46 H 1.09000 * 109.47299 * 209.99836 * 26 25 24 47 47 H 1.08997 * 109.46840 * 330.00484 * 26 25 24 48 48 H 1.08005 * 120.07194 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1067 2.1268 -1.2580 5 6 3.4858 1.9097 -1.8838 6 7 3.5746 2.6579 -3.1449 7 6 4.8880 2.4722 -3.7759 8 6 4.9413 3.2522 -5.0642 9 8 3.9798 3.8996 -5.4213 10 7 6.0576 3.2313 -5.8190 11 6 6.1063 3.9413 -6.9907 12 1 5.2501 4.5178 -7.3087 13 6 7.2571 3.9193 -7.7692 14 7 8.2989 3.2183 -7.3820 15 14 7.3235 4.8874 -9.3653 16 1 6.0308 5.5880 -9.5737 17 1 8.4216 5.8846 -9.2942 18 1 7.5708 3.9588 -10.4976 19 6 2.3863 1.9658 1.1572 20 8 2.6917 3.1423 1.1735 21 6 2.4187 1.1763 2.4068 22 6 1.3572 0.3283 2.7279 23 6 1.3910 -0.4008 3.8983 24 6 2.4789 -0.3019 4.7476 25 6 3.5363 0.5326 4.4328 26 6 4.7173 0.6337 5.3635 27 6 3.5127 1.2717 3.2679 28 1 -0.3633 0.6516 0.7947 29 1 -0.3633 0.3624 -0.9617 30 1 -0.3634 -1.0141 0.1669 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3367 1.7743 -1.9441 34 1 1.9598 3.1889 -1.0618 35 1 4.2557 2.2623 -1.1976 36 1 3.6327 0.8476 -2.0800 37 1 3.3783 3.6368 -2.9992 38 1 5.6681 2.8279 -3.1028 39 1 5.0440 1.4139 -3.9856 40 1 6.8267 2.7138 -5.5332 41 1 9.1024 3.2033 -7.9253 42 1 0.5097 0.2466 2.0635 43 1 0.5684 -1.0538 4.1500 44 1 2.5024 -0.8783 5.6607 45 1 5.4619 -0.1133 5.0881 46 1 5.1557 1.6287 5.2875 47 1 4.3886 0.4585 6.3878 48 1 4.3387 1.9232 3.0234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497348612.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:59 Heat of formation + Delta-G solvation = -62.657164 kcal Electronic energy + Delta-G solvation = -27567.105621 eV Core-core repulsion = 23621.079441 eV Total energy + Delta-G solvation = -3946.026180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65712 -40.20749 -39.58671 -37.72202 -36.64870 -35.85238 -33.92428 -33.30101 -32.33307 -31.99124 -30.19683 -28.03020 -27.61023 -25.95068 -24.79961 -24.15021 -23.00026 -22.63256 -21.18839 -20.16856 -19.87672 -18.33347 -17.92970 -17.87837 -17.24656 -17.06646 -16.56114 -16.44836 -16.08014 -15.82323 -15.51465 -15.38745 -15.09772 -14.82570 -14.72735 -14.58927 -14.37009 -13.97434 -13.72131 -13.68564 -13.53907 -13.39405 -13.10700 -13.02967 -12.93593 -12.86504 -12.76803 -12.42729 -12.38671 -12.12243 -12.11553 -12.06835 -11.82958 -11.53731 -11.04442 -10.42606 -10.04403 -10.00526 -9.80307 -9.61465 -9.48456 -8.48830 -5.97897 -0.03094 0.36885 1.35583 1.40928 1.53584 1.55964 1.83422 2.01021 2.28309 2.74439 2.92267 3.17871 3.35603 3.51932 3.84372 3.91576 3.96424 4.02253 4.03968 4.13115 4.26248 4.32245 4.37480 4.39042 4.42591 4.43713 4.53151 4.55766 4.63041 4.77791 4.81028 4.82538 4.89053 4.91600 4.95032 4.96729 5.24476 5.30013 5.36289 5.39236 5.43699 5.46215 5.58102 5.79145 5.96121 6.02697 6.22187 6.26414 6.56901 6.98100 7.09808 7.52389 8.07453 8.68853 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.001857 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.330222 B =15072.617969 C =15863.998951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 N -0.597 5.597 4 C 0.122 3.878 5 C 0.056 3.944 6 N -0.674 5.674 7 C 0.066 3.934 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.269 1.269 19 C 0.552 3.448 20 O -0.583 6.583 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.098 4.098 25 C -0.097 4.097 26 C -0.115 4.115 27 C -0.093 4.093 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.343 0.657 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.086 0.914 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -15.497 27.156 33.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.035 4.035 3 N -0.328 5.328 4 C -0.001 4.001 5 C -0.074 4.074 6 N -0.306 5.306 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 C 0.342 3.658 20 O -0.464 6.464 21 C -0.146 4.146 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.116 4.116 25 C -0.097 4.097 26 C -0.172 4.172 27 C -0.112 4.112 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.161 0.839 38 H 0.078 0.922 39 H 0.127 0.873 40 H 0.230 0.770 41 H 0.088 0.912 42 H 0.172 0.828 43 H 0.179 0.821 44 H 0.172 0.828 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.803 -14.997 26.442 32.985 hybrid contribution 1.390 1.235 -0.409 1.904 sum -11.412 -13.762 26.034 31.581 Atomic orbital electron populations 1.22334 0.94218 1.04044 1.02535 1.22163 0.95748 0.80370 1.05197 1.47943 1.63582 1.15590 1.05693 1.21271 0.97289 0.97204 0.84366 1.22243 0.96838 0.99652 0.88671 1.60037 1.29197 1.16626 1.24775 1.21530 0.91276 1.01254 0.92590 1.20777 0.83257 0.85696 0.87749 1.90489 1.37499 1.48105 1.74738 1.41926 1.14192 1.44361 1.20431 1.19725 1.00889 1.26818 0.98978 0.90252 1.26085 0.94249 0.98317 1.02745 1.69681 1.04535 1.41321 1.40551 0.84836 0.78256 0.77937 0.77076 1.19788 1.19600 1.19418 1.18974 0.75832 0.86388 0.84605 1.90774 1.50764 1.17920 1.86951 1.19811 0.98554 1.00860 0.95327 1.22032 0.97905 0.94262 0.98520 1.21505 0.99301 0.99446 0.93186 1.21635 0.92512 0.97048 1.00438 1.20152 0.97975 0.96641 0.94963 1.20863 0.94998 1.02852 0.98483 1.21099 0.97250 0.98774 0.94052 0.92301 0.92120 0.88370 0.88889 0.88191 0.87678 0.91767 0.96441 0.89251 0.83850 0.92208 0.87255 0.76951 0.91238 0.82761 0.82098 0.82776 0.90122 0.91947 0.89494 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.14 71.98 0.66 -0.95 16 2 C 0.09 1.10 5.60 86.38 0.48 1.58 16 3 N -0.60 -12.53 2.48 -825.23 -2.04 -14.57 16 4 C 0.12 2.95 5.73 86.38 0.49 3.45 16 5 C 0.06 1.50 6.01 86.30 0.52 2.02 16 6 N -0.67 -22.90 6.12 -517.95 -3.17 -26.07 16 7 C 0.07 2.41 6.17 85.56 0.53 2.94 16 8 C 0.44 21.66 7.82 87.66 0.69 22.35 16 9 O -0.62 -35.61 15.78 -3.05 -0.05 -35.66 16 10 N -0.57 -30.24 5.29 -306.99 -1.62 -31.86 16 11 C -0.33 -19.45 9.68 84.04 0.81 -18.63 16 12 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 15 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 C 0.55 14.55 7.27 86.79 0.63 15.18 16 20 O -0.58 -20.84 16.55 -3.89 -0.06 -20.91 16 21 C -0.14 -2.94 5.08 -20.09 -0.10 -3.05 16 22 C -0.11 -1.48 7.42 22.53 0.17 -1.32 16 23 C -0.12 -1.09 10.03 22.23 0.22 -0.87 16 24 C -0.10 -0.99 9.69 22.33 0.22 -0.77 16 25 C -0.10 -1.40 5.87 -19.90 -0.12 -1.51 16 26 C -0.12 -1.15 10.01 71.24 0.71 -0.44 16 27 C -0.09 -1.89 9.35 22.53 0.21 -1.68 16 28 H 0.06 0.61 6.33 -2.39 -0.02 0.59 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.10 1.10 5.09 -2.39 -0.01 1.09 16 33 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 34 H 0.06 1.86 7.35 -2.39 -0.02 1.85 16 35 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.34 12.62 8.43 -89.69 -0.76 11.87 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 40 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 41 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.16 1.58 3.68 -2.91 -0.01 1.57 16 43 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 44 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 47 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 48 H 0.11 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -77.42 398.28 1.45 -75.97 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.50 Total: 39.56 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.59 Total: 17.99 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -6.56 Total: -122.61 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -0.11 Total: -56.57 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.42 1.45 -75.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497348612.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.312 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds