Wall clock time and date at job start Tue Mar 31 2020 18:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.46984 * 2 1 4 4 C 1.46496 * 120.00339 * 84.62738 * 3 2 1 5 5 C 1.52994 * 109.47129 * 89.99597 * 4 3 2 6 6 N 1.46506 * 109.47152 * 179.97438 * 5 4 3 7 7 C 1.36933 * 120.00051 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00592 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00061 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99527 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00084 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46985 * 90.00129 * 11 9 7 13 13 H 1.48499 * 109.46595 * 210.00039 * 11 9 7 14 14 H 1.48499 * 109.47054 * 329.99937 * 11 9 7 15 15 C 1.34785 * 119.99763 * 264.62260 * 3 2 1 16 16 O 1.21271 * 119.99801 * 185.00565 * 15 3 2 17 17 C 1.50697 * 119.99826 * 5.00612 * 15 3 2 18 18 H 1.09001 * 109.47309 * 46.24666 * 17 15 3 19 19 C 1.53002 * 109.46993 * 286.24535 * 17 15 3 20 20 N 1.46500 * 109.47170 * 166.25136 * 17 15 3 21 21 C 1.34776 * 120.00015 * 205.00412 * 20 17 15 22 22 O 1.21551 * 119.99959 * 359.97438 * 21 20 17 23 23 C 1.47845 * 119.99995 * 179.97438 * 21 20 17 24 24 C 1.39578 * 120.14459 * 359.71858 * 23 21 20 25 25 C 1.37959 * 119.85329 * 179.79039 * 24 23 21 26 26 C 1.38360 * 120.14608 * 0.48978 * 25 24 23 27 27 C 1.38360 * 120.29053 * 359.73852 * 26 25 24 28 28 C 1.37961 * 120.14604 * 0.02884 * 27 26 25 29 29 H 1.09007 * 109.47185 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46952 * 300.00018 * 1 2 3 31 31 H 1.08996 * 109.47499 * 60.00230 * 1 2 3 32 32 H 1.08998 * 109.46554 * 239.99723 * 2 1 3 33 33 H 1.08998 * 109.46983 * 119.99811 * 2 1 3 34 34 H 1.08995 * 109.47221 * 209.99484 * 4 3 2 35 35 H 1.08999 * 109.46616 * 329.99473 * 4 3 2 36 36 H 1.09002 * 109.47580 * 300.00319 * 5 4 3 37 37 H 1.08999 * 109.47473 * 60.00400 * 5 4 3 38 38 H 0.97003 * 119.99884 * 0.02562 * 6 5 4 39 39 H 0.97007 * 119.99328 * 179.97438 * 10 9 7 40 40 H 1.08992 * 109.47355 * 49.92782 * 19 17 15 41 41 H 1.09003 * 109.46832 * 169.92353 * 19 17 15 42 42 H 1.08998 * 109.47342 * 289.91933 * 19 17 15 43 43 H 0.97001 * 120.00132 * 24.98743 * 20 17 15 44 44 H 1.08006 * 120.07260 * 0.02562 * 24 23 21 45 45 H 1.08001 * 119.92855 * 180.22935 * 25 24 23 46 46 H 1.07997 * 119.85666 * 179.72505 * 26 25 24 47 47 H 1.08000 * 119.93290 * 180.02562 * 27 26 25 48 48 H 1.07996 * 120.07375 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1505 2.1114 1.2631 5 6 3.5504 1.8869 1.8379 6 7 3.6828 2.6177 3.1007 7 6 4.8576 2.5651 3.8023 8 1 5.6867 1.9852 3.4246 9 6 4.9828 3.2571 4.9992 10 7 3.9722 3.9634 5.4598 11 14 6.5857 3.1859 5.9560 12 1 7.4763 4.2883 5.5124 13 1 6.3030 3.3310 7.4065 14 1 7.2518 1.8817 5.7095 15 6 2.3460 1.9801 -1.1622 16 8 2.8353 3.0897 -1.1556 17 6 2.1045 1.2707 -2.4696 18 1 1.1026 0.8413 -2.4704 19 6 3.1376 0.1556 -2.6433 20 7 2.2271 2.2261 -3.5735 21 6 1.5907 1.9948 -4.7388 22 8 0.9154 0.9932 -4.8740 23 6 1.7140 2.9592 -5.8525 24 6 2.4839 4.1132 -5.6985 25 6 2.5984 5.0070 -6.7432 26 6 1.9438 4.7665 -7.9382 27 6 1.1752 3.6269 -8.0958 28 6 1.0563 2.7227 -7.0607 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9972 3.1758 1.0852 35 1 1.4047 1.7503 1.9712 36 1 3.7038 0.8225 2.0158 37 1 4.2962 2.2480 1.1298 38 1 2.9380 3.1383 3.4402 39 1 4.0596 4.4467 6.2963 40 1 3.1704 -0.4532 -1.7399 41 1 2.8589 -0.4688 -3.4922 42 1 4.1193 0.5943 -2.8218 43 1 2.7661 3.0253 -3.4656 44 1 2.9921 4.3042 -4.7647 45 1 3.1968 5.8984 -6.6265 46 1 2.0330 5.4715 -8.7514 47 1 0.6671 3.4447 -9.0313 48 1 0.4557 1.8337 -7.1849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668634039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:15 Heat of formation + Delta-G solvation = -48.510895 kcal Electronic energy + Delta-G solvation = -28228.528114 eV Core-core repulsion = 24283.115363 eV Total energy + Delta-G solvation = -3945.412751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87888 -40.84955 -39.23057 -37.70669 -36.57717 -36.12728 -33.74542 -32.90900 -31.90468 -31.62023 -31.09891 -29.22484 -26.36981 -25.65134 -24.69106 -23.92344 -23.48882 -22.89624 -21.47029 -20.62213 -19.44989 -19.07835 -18.14008 -17.66102 -17.12170 -16.95124 -16.52409 -16.44755 -16.10448 -15.76300 -15.54438 -15.32353 -15.23702 -15.05570 -14.93145 -14.73691 -14.53833 -14.25906 -14.14483 -13.62225 -13.54456 -13.34358 -13.05352 -13.02369 -12.91024 -12.71319 -12.61821 -12.60740 -12.31014 -12.13501 -12.04019 -11.88598 -11.81877 -11.19431 -11.00306 -10.94694 -10.41397 -9.97377 -9.94045 -9.82760 -9.07273 -7.98675 -5.29282 -0.18111 0.39642 1.35187 1.45496 1.48395 1.54920 1.57874 1.77893 2.15465 2.54859 2.87509 3.17888 3.34820 3.58695 3.86653 3.89414 3.96357 3.96748 4.00514 4.05787 4.11537 4.17948 4.23637 4.37953 4.42052 4.45238 4.50922 4.53910 4.61411 4.69292 4.83298 4.84142 4.86902 5.04226 5.04496 5.07097 5.12860 5.16381 5.32350 5.34690 5.40938 5.43184 5.49076 5.49570 5.93018 6.22545 6.24972 6.31747 6.92143 6.99631 7.29020 8.00808 8.25809 9.24604 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002259 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.713942 B =12393.623021 C =13538.165595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 N -0.595 5.595 4 C 0.124 3.876 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.249 4.249 8 H 0.074 0.926 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.977 3.023 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.268 1.268 15 C 0.507 3.493 16 O -0.571 6.571 17 C 0.132 3.868 18 H 0.120 0.880 19 C -0.162 4.162 20 N -0.708 5.708 21 C 0.563 3.437 22 O -0.567 6.567 23 C -0.158 4.158 24 C -0.093 4.093 25 C -0.131 4.131 26 C -0.089 4.089 27 C -0.129 4.129 28 C -0.073 4.073 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.031 0.969 37 H 0.003 0.997 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.412 0.588 44 H 0.131 0.869 45 H 0.151 0.849 46 H 0.157 0.843 47 H 0.155 0.845 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 -6.015 -28.071 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.040 4.040 3 N -0.327 5.327 4 C 0.000 4.000 5 C 0.022 3.978 6 N -0.386 5.386 7 C -0.381 4.381 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.806 3.194 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.192 1.192 15 C 0.295 3.705 16 O -0.450 6.450 17 C 0.024 3.976 18 H 0.138 0.862 19 C -0.220 4.220 20 N -0.362 5.362 21 C 0.352 3.648 22 O -0.447 6.447 23 C -0.161 4.161 24 C -0.112 4.112 25 C -0.149 4.149 26 C -0.107 4.107 27 C -0.147 4.147 28 C -0.092 4.092 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.251 0.749 44 H 0.148 0.852 45 H 0.168 0.832 46 H 0.175 0.825 47 H 0.173 0.827 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.603 -6.231 -28.089 29.760 hybrid contribution 0.770 0.840 1.258 1.698 sum -6.832 -5.392 -26.831 28.207 Atomic orbital electron populations 1.22179 0.94539 1.03872 1.02000 1.22270 0.95722 0.80321 1.05719 1.47907 1.64097 1.15598 1.05119 1.21357 0.96949 0.96949 0.84701 1.20945 0.95241 0.94972 0.86659 1.42390 1.14627 1.58913 1.22690 1.19582 0.92396 1.24397 1.01692 0.90832 1.25631 1.01315 1.00252 0.99487 1.69821 1.32406 1.36871 1.22688 0.85088 0.78906 0.78048 0.77387 1.21505 1.21764 1.19234 1.21008 0.77302 0.85890 0.86341 1.90701 1.44828 1.21874 1.87566 1.20830 1.03606 0.90111 0.83060 0.86229 1.22296 0.97928 0.97080 1.04666 1.45767 1.51606 1.26432 1.12362 1.18585 0.78107 0.85590 0.82497 1.90728 1.41744 1.29677 1.82599 1.19891 1.04232 0.96850 0.95111 1.21553 0.96577 0.92976 1.00058 1.21483 1.00355 1.00028 0.93057 1.21818 0.94012 0.96959 0.97883 1.21496 0.99606 0.94158 0.99439 1.21409 0.96542 0.99617 0.91640 0.88815 0.92804 0.92986 0.87187 0.88804 0.92031 0.88644 0.95096 0.97870 0.79276 0.93815 0.88597 0.89913 0.91757 0.74941 0.85157 0.83165 0.82498 0.82732 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.17 71.98 0.73 -1.95 16 2 C 0.08 1.46 5.58 86.38 0.48 1.94 16 3 N -0.60 -15.89 2.47 -821.86 -2.03 -17.92 16 4 C 0.12 4.19 5.51 86.38 0.48 4.66 16 5 C 0.15 6.26 6.58 86.38 0.57 6.83 16 6 N -0.74 -39.09 5.60 -343.44 -1.92 -41.01 16 7 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 10 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 11 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.51 14.60 6.99 87.65 0.61 15.21 16 16 O -0.57 -21.03 15.48 -3.00 -0.05 -21.08 16 17 C 0.13 2.99 2.16 44.24 0.10 3.09 16 18 H 0.12 2.59 6.29 -2.39 -0.02 2.57 16 19 C -0.16 -2.98 9.02 71.98 0.65 -2.33 16 20 N -0.71 -16.50 4.97 -448.98 -2.23 -18.74 16 21 C 0.56 13.71 7.74 86.79 0.67 14.38 16 22 O -0.57 -16.32 16.01 -3.88 -0.06 -16.38 16 23 C -0.16 -3.23 5.87 -20.09 -0.12 -3.35 16 24 C -0.09 -1.59 9.54 22.53 0.21 -1.37 16 25 C -0.13 -1.68 10.03 22.23 0.22 -1.46 16 26 C -0.09 -0.93 10.04 22.33 0.22 -0.70 16 27 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 28 C -0.07 -1.30 9.60 22.53 0.22 -1.08 16 29 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.89 7.35 -2.39 -0.02 0.87 16 32 H 0.11 1.54 4.15 -2.39 -0.01 1.53 16 33 H 0.09 1.63 8.11 -2.39 -0.02 1.61 16 34 H 0.06 2.38 7.50 -2.39 -0.02 2.36 16 35 H 0.10 2.92 8.07 -2.39 -0.02 2.90 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.38 20.72 7.67 -92.71 -0.71 20.01 16 39 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 40 H 0.10 1.45 5.57 -2.39 -0.01 1.44 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.41 9.49 5.75 -92.71 -0.53 8.96 16 44 H 0.13 2.09 6.41 -2.91 -0.02 2.07 16 45 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 47 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 48 H 0.13 2.35 7.65 -2.91 -0.02 2.33 16 Total: -1.00 -76.58 396.49 2.33 -74.25 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.26 Total: 36.61 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.58 Total: 15.19 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -5.91 Total: -137.27 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.11 Total: -37.46 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -76.58 2.33 -74.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668634039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.737 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds