Wall clock time and date at job start Tue Mar 31 2020 17:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47110 * 2 1 4 4 O 1.42896 * 109.47075 * 239.99710 * 2 1 3 5 5 C 1.35672 * 117.00001 * 90.00415 * 4 2 1 6 6 C 1.38922 * 119.68842 * 179.97438 * 5 4 2 7 7 C 1.38373 * 119.11091 * 180.25516 * 6 5 4 8 8 C 1.38825 * 118.48977 * 359.50586 * 7 6 5 9 9 C 1.38050 * 119.28846 * 0.51297 * 8 7 6 10 10 N 1.31966 * 120.82946 * 359.73156 * 9 8 7 11 11 C 1.50707 * 109.46643 * 119.99982 * 2 1 3 12 12 O 1.21283 * 119.99761 * 120.00107 * 11 2 1 13 13 N 1.34774 * 120.00192 * 299.99812 * 11 2 1 14 14 C 1.46494 * 120.00016 * 180.02562 * 13 11 2 15 15 H 1.08999 * 110.64450 * 325.69648 * 14 13 11 16 16 C 1.54324 * 110.72052 * 88.84407 * 14 13 11 17 17 N 1.47021 * 107.27267 * 96.17082 * 16 14 13 18 18 C 1.36934 * 125.65170 * 178.90366 * 17 16 14 19 19 H 1.07997 * 120.00633 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99806 * 0.02584 * 18 17 16 21 21 N 1.31624 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00075 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46734 * 89.99928 * 22 20 18 24 24 H 1.48504 * 109.46868 * 209.99721 * 22 20 18 25 25 H 1.48496 * 109.46886 * 329.99713 * 22 20 18 26 26 C 1.47435 * 108.70358 * 358.93980 * 17 16 14 27 27 C 1.55163 * 110.71874 * 202.55965 * 14 13 11 28 28 C 1.53004 * 111.00373 * 35.21054 * 27 14 13 29 29 C 1.52999 * 111.00320 * 159.06379 * 27 14 13 30 30 H 1.09007 * 109.46954 * 59.99801 * 1 2 3 31 31 H 1.08995 * 109.47810 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47158 * 300.00286 * 1 2 3 33 33 H 1.08002 * 120.43904 * 359.97271 * 6 5 4 34 34 H 1.08004 * 120.75437 * 179.72383 * 7 6 5 35 35 H 1.07999 * 120.36209 * 180.22302 * 8 7 6 36 36 H 1.07997 * 119.58537 * 179.75177 * 9 8 7 37 37 H 0.97001 * 119.99853 * 0.02562 * 13 11 2 38 38 H 1.09001 * 109.87815 * 215.58675 * 16 14 13 39 39 H 1.08990 * 109.88043 * 336.75030 * 16 14 13 40 40 H 0.97004 * 119.99543 * 180.02562 * 21 20 18 41 41 H 1.08994 * 110.36682 * 142.96786 * 26 17 16 42 42 H 1.08995 * 110.36256 * 265.18162 * 26 17 16 43 43 H 1.09000 * 109.47038 * 60.00263 * 28 27 14 44 44 H 1.09000 * 109.46623 * 179.97438 * 28 27 14 45 45 H 1.08996 * 109.47073 * 299.99844 * 28 27 14 46 46 H 1.09004 * 109.47075 * 59.99977 * 29 27 14 47 47 H 1.09002 * 109.47337 * 179.97438 * 29 27 14 48 48 H 1.09000 * 109.47507 * 299.99846 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6748 -0.5149 -3.4395 7 6 2.8852 0.2688 -4.5603 8 6 2.6138 1.6278 -4.4785 9 6 2.1558 2.1546 -3.2874 10 7 1.9696 1.3823 -2.2336 11 6 2.0323 -0.7105 1.2306 12 8 2.7295 -1.6966 1.1193 13 7 1.7067 -0.2500 2.4546 14 6 2.1953 -0.9403 3.6508 15 1 2.2516 -2.0151 3.4782 16 6 3.5692 -0.3834 4.0796 17 7 3.3258 0.6239 5.1224 18 6 4.2896 1.3391 5.7818 19 1 4.0070 2.0591 6.5355 20 6 5.6299 1.1386 5.4814 21 7 5.9744 0.2607 4.5632 22 14 6.9447 2.1146 6.3804 23 1 7.3634 1.3758 7.5987 24 1 8.1171 2.3039 5.4888 25 1 6.3988 3.4400 6.7684 26 6 1.8721 0.7360 5.3413 27 6 1.2919 -0.6272 4.8728 28 6 -0.1724 -0.4895 4.4513 29 6 1.4498 -1.6932 5.9589 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.8723 -1.5763 -3.4689 34 1 3.2489 -0.1674 -5.4789 35 1 2.7637 2.2671 -5.3360 36 1 1.9470 3.2118 -3.2173 37 1 1.1487 0.5385 2.5436 38 1 4.1872 -1.1879 4.4783 39 1 4.0646 0.0790 3.2259 40 1 6.9111 0.1203 4.3536 41 1 1.6588 0.8955 6.3982 42 1 1.4604 1.5501 4.7449 43 1 -0.5091 -1.4216 3.9976 44 1 -0.7834 -0.2706 5.3270 45 1 -0.2679 0.3214 3.7293 46 1 2.4878 -1.7234 6.2902 47 1 0.8060 -1.4492 6.8040 48 1 1.1684 -2.6664 5.5566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700577829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:12 Heat of formation + Delta-G solvation = -29.755398 kcal Electronic energy + Delta-G solvation = -29480.727000 eV Core-core repulsion = 25536.127548 eV Total energy + Delta-G solvation = -3944.599452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88869 -41.15597 -39.74512 -38.55070 -35.75101 -34.73362 -33.46756 -32.99741 -32.61353 -31.00412 -29.67045 -28.06656 -27.42369 -26.09231 -25.14757 -24.48155 -23.77276 -22.21263 -21.38561 -20.24642 -19.56952 -18.69711 -18.58297 -17.54766 -17.19135 -16.97997 -16.69918 -16.65601 -15.86500 -15.58568 -15.56837 -15.49992 -15.27949 -14.80310 -14.43199 -14.28865 -14.03957 -13.90382 -13.80754 -13.46244 -13.38177 -13.15222 -12.95554 -12.90893 -12.83296 -12.78103 -12.70908 -12.58148 -12.21313 -12.12158 -11.86455 -11.75127 -11.54168 -11.30796 -10.94839 -10.87565 -10.72658 -10.58051 -10.06980 -9.49695 -8.90188 -7.84362 -5.21186 0.19900 0.32584 1.42686 1.45211 1.48144 1.50716 1.53931 2.46603 2.49975 2.82487 3.27921 3.34094 3.46015 3.56914 3.73260 3.85471 3.94210 4.00050 4.05422 4.07705 4.11725 4.23262 4.36741 4.38977 4.51058 4.66052 4.67287 4.71600 4.80537 4.86279 4.88989 4.96354 5.03852 5.06245 5.08762 5.13602 5.17295 5.28081 5.28216 5.36488 5.45300 5.52758 5.57112 5.68509 5.72105 6.16372 6.17387 6.48441 6.86184 7.06546 7.16670 7.77200 8.41485 9.24923 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.003360 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.382845 B = 8332.251938 C = 9894.015269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.111 0.889 4 O -0.304 6.304 5 C 0.291 3.709 6 C -0.207 4.207 7 C -0.036 4.036 8 C -0.204 4.204 9 C 0.125 3.875 10 N -0.562 5.562 11 C 0.510 3.490 12 O -0.575 6.575 13 N -0.689 5.689 14 C 0.138 3.862 15 H 0.077 0.923 16 C 0.193 3.807 17 N -0.620 5.620 18 C -0.235 4.235 19 H 0.089 0.911 20 C -0.072 4.072 21 N -0.955 5.955 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.263 1.263 26 C 0.137 3.863 27 C -0.072 4.072 28 C -0.124 4.124 29 C -0.124 4.124 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.186 0.814 37 H 0.412 0.588 38 H 0.005 0.995 39 H -0.004 1.004 40 H 0.242 0.758 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.028 0.972 47 H 0.080 0.920 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.841 2.807 -15.269 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.128 0.872 4 O -0.211 6.211 5 C 0.113 3.887 6 C -0.227 4.227 7 C -0.062 4.062 8 C -0.223 4.223 9 C -0.030 4.030 10 N -0.286 5.286 11 C 0.296 3.704 12 O -0.454 6.454 13 N -0.342 5.342 14 C 0.032 3.968 15 H 0.095 0.905 16 C 0.067 3.933 17 N -0.346 5.346 18 C -0.364 4.364 19 H 0.107 0.893 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.228 1.228 25 H -0.188 1.188 26 C 0.012 3.988 27 C -0.074 4.074 28 C -0.182 4.182 29 C -0.182 4.182 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.161 0.839 34 H 0.192 0.808 35 H 0.191 0.809 36 H 0.203 0.797 37 H 0.250 0.750 38 H 0.023 0.977 39 H 0.014 0.986 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.099 0.901 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.418 2.215 -14.493 22.011 hybrid contribution 1.788 0.262 -0.091 1.810 sum -14.629 2.477 -14.583 20.804 Atomic orbital electron populations 1.22122 0.89431 1.03930 1.05202 1.22077 0.97677 0.96910 0.81288 0.87154 1.86324 1.80691 1.35690 1.18401 1.20221 0.93179 0.88134 0.87132 1.21361 1.06593 1.02931 0.91858 1.21866 0.92843 0.93647 0.97795 1.22417 1.03109 0.96385 1.00425 1.23055 0.92428 1.00254 0.87269 1.67225 1.22736 1.04537 1.34134 1.20785 0.79780 0.84400 0.85408 1.90702 1.38940 1.28509 1.87201 1.45667 1.52704 1.31836 1.03990 1.22126 0.94356 0.95897 0.84435 0.90530 1.21069 0.91804 0.90479 0.89992 1.44674 1.01696 1.44929 1.43275 1.19495 0.86433 1.15458 1.15016 0.89317 1.25700 0.99509 1.00869 1.00321 1.70255 1.15388 1.38807 1.36031 0.85080 0.78450 0.78658 0.77182 1.21288 1.22792 1.18795 1.22007 0.83096 0.94758 0.98923 1.22078 0.95964 0.96050 0.93305 1.21666 0.91679 1.02530 1.02327 1.21599 1.01140 0.97571 0.97871 0.90167 0.91349 0.87864 0.83938 0.80753 0.80916 0.79669 0.75002 0.97687 0.98555 0.94877 0.93151 0.94856 0.91550 0.90123 0.91559 0.95257 0.90071 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.43 71.98 0.68 -2.43 16 2 C 0.08 2.44 2.91 29.85 0.09 2.53 16 3 H 0.11 3.37 6.98 -2.39 -0.02 3.36 16 4 O -0.30 -10.33 9.29 -70.85 -0.66 -10.99 16 5 C 0.29 8.41 7.45 84.79 0.63 9.04 16 6 C -0.21 -4.78 10.04 22.47 0.23 -4.55 16 7 C -0.04 -0.56 10.17 22.44 0.23 -0.33 16 8 C -0.20 -2.76 10.11 22.37 0.23 -2.54 16 9 C 0.13 2.24 11.18 84.63 0.95 3.19 16 10 N -0.56 -14.49 8.65 -308.95 -2.67 -17.16 16 11 C 0.51 19.30 7.23 87.66 0.63 19.93 16 12 O -0.57 -27.74 16.18 16.00 0.26 -27.49 16 13 N -0.69 -23.30 4.40 -436.91 -1.92 -25.22 16 14 C 0.14 5.43 2.54 46.18 0.12 5.55 16 15 H 0.08 3.23 7.53 -2.39 -0.02 3.22 16 16 C 0.19 10.23 4.80 86.73 0.42 10.65 16 17 N -0.62 -31.75 3.38 -691.03 -2.34 -34.09 16 18 C -0.23 -13.27 10.28 84.04 0.86 -12.41 16 19 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 20 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 21 N -0.96 -61.36 10.31 21.65 0.22 -61.14 16 22 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 25 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.14 5.17 6.16 87.02 0.54 5.71 16 27 C -0.07 -2.26 0.84 -50.62 -0.04 -2.31 16 28 C -0.12 -2.60 8.23 71.98 0.59 -2.00 16 29 C -0.12 -3.79 8.58 71.98 0.62 -3.17 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.58 7.56 -2.39 -0.02 1.56 16 33 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.41 11.10 6.43 -92.71 -0.60 10.51 16 38 H 0.00 0.31 7.38 -2.39 -0.02 0.29 16 39 H 0.00 -0.23 7.41 -2.39 -0.02 -0.25 16 40 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 42 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.20 6.44 -2.39 -0.02 1.18 16 46 H 0.03 1.12 7.91 -2.39 -0.02 1.10 16 47 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -84.30 389.46 2.50 -81.80 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.36 Total: 21.84 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 7.22 Total: 23.09 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -6.71 Total: -137.61 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.40 Total: -38.48 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -84.30 2.50 -81.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700577829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.046 kcal (2) G-P(sol) polarization free energy of solvation -84.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds