Wall clock time and date at job start Tue Mar 31 2020 17:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47052 * 2 1 4 4 O 1.42899 * 109.47268 * 120.00059 * 2 1 3 5 5 C 1.35676 * 117.00138 * 270.00383 * 4 2 1 6 6 C 1.38915 * 119.68761 * 179.97438 * 5 4 2 7 7 C 1.38371 * 119.11325 * 179.97438 * 6 5 4 8 8 C 1.38830 * 118.48674 * 0.02562 * 7 6 5 9 9 C 1.38041 * 119.28635 * 359.97438 * 8 7 6 10 10 N 1.31964 * 120.83885 * 359.74791 * 9 8 7 11 11 C 1.50704 * 109.47161 * 239.99968 * 2 1 3 12 12 O 1.21283 * 120.00000 * 244.72646 * 11 2 1 13 13 N 1.34772 * 119.99916 * 65.00275 * 11 2 1 14 14 C 1.46502 * 120.00321 * 175.29820 * 13 11 2 15 15 C 1.52991 * 109.47409 * 174.05571 * 14 13 11 16 16 C 1.53000 * 109.46609 * 54.05531 * 14 13 11 17 17 N 1.46501 * 109.47265 * 60.00735 * 16 14 13 18 18 C 1.36942 * 119.99957 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99973 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99713 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99766 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00200 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47260 * 89.99600 * 22 20 18 24 24 H 1.48498 * 109.47126 * 209.99365 * 22 20 18 25 25 H 1.48499 * 109.46822 * 329.99484 * 22 20 18 26 26 C 1.52993 * 109.47005 * 294.06034 * 14 13 11 27 27 C 1.53007 * 117.49946 * 2.15573 * 26 14 13 28 28 C 1.53007 * 117.49724 * 293.49293 * 26 14 13 29 29 H 1.09000 * 109.47375 * 300.00142 * 1 2 3 30 30 H 1.09002 * 109.47031 * 59.99878 * 1 2 3 31 31 H 1.08994 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.44227 * 359.95697 * 6 5 4 33 33 H 1.08005 * 120.75760 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.35629 * 180.02562 * 8 7 6 35 35 H 1.08011 * 119.57979 * 179.97438 * 9 8 7 36 36 H 0.97005 * 119.99838 * 355.29865 * 13 11 2 37 37 H 1.09002 * 109.47447 * 60.00028 * 15 14 13 38 38 H 1.09000 * 109.46956 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47667 * 300.00112 * 15 14 13 40 40 H 1.09000 * 109.46976 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.47607 * 299.99998 * 16 14 13 42 42 H 0.96996 * 120.00077 * 359.97438 * 17 16 14 43 43 H 0.97006 * 119.99885 * 180.02562 * 21 20 18 44 44 H 1.08999 * 115.55395 * 147.82277 * 26 14 13 45 45 H 1.08997 * 117.50046 * 359.97438 * 27 26 14 46 46 H 1.08993 * 117.49935 * 145.02336 * 27 26 14 47 47 H 1.08993 * 117.49686 * 214.97764 * 28 26 14 48 48 H 1.08999 * 117.49917 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2117 0.0829 2.2742 6 6 2.6737 -0.5150 3.4398 7 6 2.8794 0.2679 4.5621 8 6 2.6138 1.6280 4.4784 9 6 2.1565 2.1547 3.2872 10 7 1.9751 1.3834 2.2319 11 6 2.0324 -0.7104 -1.2305 12 8 2.6573 -1.7441 -1.1213 13 7 1.7920 -0.1942 -2.4520 14 6 2.3671 -0.8277 -3.6412 15 6 1.8254 -0.1418 -4.8969 16 6 1.9857 -2.3092 -3.6645 17 7 0.5268 -2.4374 -3.7003 18 6 -0.0510 -3.6787 -3.7264 19 1 0.5688 -4.5630 -3.7211 20 6 -1.4334 -3.8002 -3.7598 21 7 -1.9888 -4.9932 -3.7854 22 14 -2.5055 -2.2704 -3.7696 23 1 -2.7570 -1.8512 -5.1719 24 1 -3.7984 -2.5678 -3.1025 25 1 -1.8133 -1.1763 -3.0424 26 6 3.8907 -0.6938 -3.6039 27 6 4.5104 -0.0123 -2.3822 28 6 4.4796 0.7127 -3.7301 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.8695 -1.5767 3.4698 33 1 3.2385 -0.1692 5.4822 34 1 2.7642 2.2673 5.3359 35 1 1.9480 3.2121 3.2170 36 1 1.2382 0.5969 -2.5438 37 1 2.0970 0.9137 -4.8803 38 1 2.2530 -0.6135 -5.7816 39 1 0.7399 -0.2371 -4.9235 40 1 2.4139 -2.7807 -4.5490 41 1 2.3716 -2.7980 -2.7699 42 1 -0.0299 -1.6432 -3.7054 43 1 -2.9548 -5.0781 -3.8091 44 1 4.4460 -1.5145 -4.0580 45 1 3.8325 0.3410 -1.6052 46 1 5.4734 -0.3844 -2.0328 47 1 5.4224 0.8172 -4.2668 48 1 3.7815 1.5427 -3.8392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714173682.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:57 Heat of formation + Delta-G solvation = -1.591976 kcal Electronic energy + Delta-G solvation = -30036.084238 eV Core-core repulsion = 26092.706044 eV Total energy + Delta-G solvation = -3943.378194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06457 -41.34900 -39.35795 -38.08830 -36.74516 -35.08854 -33.92463 -33.42867 -32.81101 -31.42223 -30.73562 -27.91974 -26.10392 -25.29609 -24.56943 -23.96601 -23.14664 -22.84362 -21.76010 -20.56202 -19.77234 -19.52748 -18.66666 -17.50007 -17.25945 -16.85165 -16.82233 -16.61695 -16.41876 -15.93359 -15.52637 -15.35798 -15.12069 -15.04445 -14.73089 -14.46122 -14.26180 -13.99732 -13.73365 -13.58054 -13.41839 -13.40617 -13.23585 -12.96244 -12.85063 -12.78454 -12.44400 -12.36982 -12.19631 -12.14025 -11.97308 -11.82082 -11.26091 -11.12448 -10.97473 -10.90777 -10.60478 -10.43647 -10.05131 -9.49591 -9.21906 -8.02779 -5.35099 0.20208 0.32016 1.30384 1.38771 1.45515 1.50684 1.61328 2.46070 2.47451 2.82612 2.90190 3.27192 3.27836 3.49303 3.58836 3.82927 3.89348 3.91465 3.96102 4.00008 4.04455 4.11369 4.22347 4.23914 4.31187 4.34690 4.52162 4.57657 4.61517 4.76526 4.79977 4.81472 4.88297 4.93827 5.00611 5.04803 5.07252 5.16875 5.26084 5.28527 5.28757 5.31383 5.53561 5.63075 5.75231 6.19030 6.20318 6.56425 6.85566 7.07731 7.28511 7.81869 8.06824 9.19844 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.004070 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.931179 B = 6877.332094 C = 8375.574077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.081 3.919 3 H 0.129 0.871 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.211 4.211 7 C -0.036 4.036 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.557 5.557 11 C 0.519 3.481 12 O -0.545 6.545 13 N -0.706 5.706 14 C 0.207 3.793 15 C -0.144 4.144 16 C 0.141 3.859 17 N -0.742 5.742 18 C -0.231 4.231 19 H 0.041 0.959 20 C -0.069 4.069 21 N -0.989 5.989 22 Si 0.958 3.042 23 H -0.270 1.270 24 H -0.298 1.298 25 H -0.245 1.245 26 C -0.164 4.164 27 C -0.178 4.178 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.136 0.864 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.191 0.809 36 H 0.412 0.588 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.727 24.821 12.533 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.147 0.853 4 O -0.212 6.212 5 C 0.115 3.885 6 C -0.232 4.232 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.305 3.695 12 O -0.422 6.422 13 N -0.360 5.360 14 C 0.121 3.879 15 C -0.202 4.202 16 C 0.014 3.986 17 N -0.388 5.388 18 C -0.362 4.362 19 H 0.060 0.940 20 C -0.259 4.259 21 N -0.640 5.640 22 Si 0.784 3.216 23 H -0.196 1.196 24 H -0.225 1.225 25 H -0.169 1.169 26 C -0.184 4.184 27 C -0.215 4.215 28 C -0.177 4.177 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.154 0.846 33 H 0.189 0.811 34 H 0.191 0.809 35 H 0.208 0.792 36 H 0.249 0.751 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.949 23.923 11.764 29.214 hybrid contribution -0.955 -0.536 0.600 1.249 sum 10.993 23.386 12.364 28.647 Atomic orbital electron populations 1.22141 0.92060 1.02590 1.04920 1.22100 0.95957 0.97793 0.81990 0.85309 1.86388 1.80342 1.35899 1.18619 1.20191 0.93014 0.88200 0.87068 1.21338 1.07007 1.02691 0.92116 1.21842 0.92946 0.93802 0.97556 1.22418 1.03170 0.96143 1.00595 1.23091 0.92082 1.00368 0.87159 1.67231 1.22499 1.04225 1.34211 1.20355 0.79304 0.84771 0.85100 1.90697 1.41046 1.23764 1.86655 1.45817 1.53345 1.32184 1.04668 1.19967 0.91282 0.91428 0.85215 1.22006 1.01108 1.01824 0.95222 1.21214 0.83536 0.95277 0.98578 1.42411 1.02329 1.03310 1.90722 1.18979 0.90722 0.85470 1.40997 0.94042 1.25572 0.97735 0.99962 1.02668 1.69920 1.10181 1.23885 1.59994 0.85367 0.77810 0.79841 0.78576 1.19576 1.22465 1.16915 1.22450 0.93488 0.98007 1.04424 1.22886 1.01524 1.05073 0.92044 1.23090 1.02979 0.93615 0.98034 0.89883 0.88424 0.94004 0.84625 0.81065 0.80879 0.79241 0.75132 0.88570 0.90232 0.92695 0.95939 0.95112 0.79872 0.93420 0.88050 0.90262 0.89910 0.87183 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.48 71.98 0.68 -3.74 16 2 C 0.08 2.40 2.90 29.85 0.09 2.49 16 3 H 0.13 3.15 6.98 -2.39 -0.02 3.14 16 4 O -0.31 -10.38 9.30 -70.94 -0.66 -11.04 16 5 C 0.29 8.06 7.45 84.79 0.63 8.69 16 6 C -0.21 -4.81 10.04 22.46 0.23 -4.59 16 7 C -0.04 -0.52 10.17 22.44 0.23 -0.30 16 8 C -0.20 -2.35 10.11 22.36 0.23 -2.13 16 9 C 0.13 1.91 11.17 84.63 0.95 2.86 16 10 N -0.56 -12.69 8.64 -308.95 -2.67 -15.36 16 11 C 0.52 17.85 4.21 87.66 0.37 18.22 16 12 O -0.55 -24.19 12.84 15.96 0.20 -23.98 16 13 N -0.71 -19.88 4.14 -422.94 -1.75 -21.63 16 14 C 0.21 6.25 0.55 3.60 0.00 6.25 16 15 C -0.14 -3.44 8.18 71.98 0.59 -2.85 16 16 C 0.14 6.09 4.81 86.38 0.42 6.51 16 17 N -0.74 -36.56 4.98 -343.45 -1.71 -38.27 16 18 C -0.23 -14.16 10.47 84.03 0.88 -13.28 16 19 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 20 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 21 N -0.99 -66.46 13.97 21.65 0.30 -66.16 16 22 Si 0.96 46.08 27.74 68.60 1.90 47.99 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 25 H -0.24 -10.24 6.52 99.48 0.65 -9.59 16 26 C -0.16 -4.42 4.89 -10.79 -0.05 -4.48 16 27 C -0.18 -4.63 8.62 30.63 0.26 -4.37 16 28 C -0.14 -2.65 9.68 30.63 0.30 -2.35 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.20 7.78 -2.39 -0.02 2.18 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.19 1.43 8.06 -2.90 -0.02 1.41 16 36 H 0.41 8.59 8.11 -92.70 -0.75 7.84 16 37 H 0.10 1.55 6.91 -2.39 -0.02 1.53 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.46 6.86 -2.39 -0.02 1.44 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.03 1.58 5.63 -2.39 -0.01 1.57 16 42 H 0.37 16.48 4.21 -92.71 -0.39 16.09 16 43 H 0.26 16.35 8.31 -92.70 -0.77 15.58 16 44 H 0.10 2.91 8.06 -2.39 -0.02 2.89 16 45 H 0.08 2.22 5.21 -2.39 -0.01 2.20 16 46 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.11 1.68 7.20 -2.39 -0.02 1.66 16 Total: -1.00 -86.46 384.99 1.66 -84.80 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.21 Total: 40.47 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.26 Total: 3.18 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -5.83 Total: -141.42 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.45 Total: -35.03 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.99 kcal Total: -86.46 1.66 -84.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714173682.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.208 kcal (2) G-P(sol) polarization free energy of solvation -86.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds