Wall clock time and date at job start Tue Mar 31 2020 17:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47204 * 2 1 4 4 O 1.42900 * 109.46905 * 240.00674 * 2 1 3 5 5 C 1.35676 * 117.00351 * 90.00083 * 4 2 1 6 6 C 1.38917 * 119.68889 * 180.02562 * 5 4 2 7 7 C 1.38373 * 119.11522 * 179.97438 * 6 5 4 8 8 C 1.38839 * 118.48353 * 359.97438 * 7 6 5 9 9 C 1.38045 * 119.28611 * 0.02562 * 8 7 6 10 10 N 1.31955 * 120.84023 * 359.74494 * 9 8 7 11 11 C 1.50698 * 109.47628 * 120.00533 * 2 1 3 12 12 O 1.21282 * 120.00039 * 119.99893 * 11 2 1 13 13 N 1.34775 * 119.99876 * 300.00148 * 11 2 1 14 14 C 1.46505 * 119.99981 * 179.97438 * 13 11 2 15 15 H 1.08994 * 109.20286 * 35.63764 * 14 13 11 16 16 C 1.50128 * 109.20463 * 155.00049 * 14 13 11 17 17 C 1.52539 * 105.41254 * 218.02462 * 16 14 13 18 18 C 1.46237 * 114.27640 * 270.59533 * 17 16 14 19 19 N 1.50177 * 107.53239 * 58.40902 * 18 17 16 20 20 C 1.36936 * 120.53781 * 109.60919 * 19 18 17 21 21 H 1.07993 * 120.00131 * 156.72350 * 20 19 18 22 22 C 1.38814 * 119.99641 * 336.71942 * 20 19 18 23 23 N 1.31612 * 120.00452 * 340.40250 * 22 20 19 24 24 Si 1.86809 * 119.99659 * 160.40920 * 22 20 19 25 25 H 1.48499 * 109.46835 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46958 * 119.99932 * 24 22 20 27 27 H 1.48501 * 109.46744 * 239.99648 * 24 22 20 28 28 C 1.43433 * 118.92299 * 289.58679 * 19 18 17 29 29 C 1.54842 * 109.20917 * 276.32258 * 14 13 11 30 30 H 1.09003 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47033 * 299.99386 * 1 2 3 32 32 H 1.08999 * 109.47366 * 59.99160 * 1 2 3 33 33 H 1.08003 * 120.44083 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.76306 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.35103 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.57634 * 179.97438 * 9 8 7 37 37 H 0.97004 * 120.00013 * 0.02562 * 13 11 2 38 38 H 1.08992 * 110.25292 * 336.99597 * 16 14 13 39 39 H 1.08993 * 110.24963 * 99.05592 * 16 14 13 40 40 H 1.08996 * 108.52041 * 31.83589 * 17 16 14 41 41 H 1.08997 * 108.51752 * 149.50952 * 17 16 14 42 42 H 1.08999 * 109.84070 * 177.91083 * 18 17 16 43 43 H 1.08992 * 109.84872 * 298.90177 * 18 17 16 44 44 H 0.96997 * 120.00170 * 179.97438 * 23 22 20 45 45 H 1.09004 * 108.15755 * 213.28956 * 28 19 18 46 46 H 1.09000 * 108.15859 * 329.85340 * 28 19 18 47 47 H 1.09007 * 109.35690 * 320.99211 * 29 14 13 48 48 H 1.09000 * 109.35831 * 80.58136 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2116 0.0831 -2.2742 6 6 2.6735 -0.5146 -3.4400 7 6 2.8783 0.2682 -4.5625 8 6 2.6119 1.6282 -4.4789 9 6 2.1547 2.1547 -3.2875 10 7 1.9647 1.3819 -2.2350 11 6 2.0324 -0.7105 1.2303 12 8 2.7297 -1.6965 1.1189 13 7 1.7068 -0.2502 2.4545 14 6 2.1948 -0.9412 3.6506 15 1 3.1982 -1.3219 3.4604 16 6 2.2431 0.0283 4.7959 17 6 3.5027 -0.3305 5.5779 18 6 3.2959 -1.3303 6.6249 19 7 2.7482 -2.5654 5.9693 20 6 3.5152 -3.6947 5.8623 21 1 3.0431 -4.6596 5.7509 22 6 4.8997 -3.5992 5.8969 23 7 5.4865 -2.4483 5.6456 24 14 5.9299 -5.1045 6.3001 25 1 5.0362 -6.2657 6.5416 26 1 6.8350 -5.4043 5.1616 27 1 6.7373 -4.8399 7.5180 28 6 1.4085 -2.5431 5.4574 29 6 1.2535 -2.1275 3.9733 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.8703 -1.5762 -3.4698 34 1 3.2365 -0.1689 -5.4829 35 1 2.7607 2.2672 -5.3368 36 1 1.9463 3.2121 -3.2171 37 1 1.1488 0.5383 2.5436 38 1 2.3092 1.0502 4.4226 39 1 1.3617 -0.0883 5.4263 40 1 4.2478 -0.7102 4.8789 41 1 3.8933 0.5760 6.0401 42 1 4.2445 -1.5589 7.1107 43 1 2.5839 -0.9548 7.3598 44 1 6.4538 -2.3816 5.6701 45 1 0.9823 -3.5391 5.5776 46 1 0.8237 -1.8535 6.0661 47 1 0.2213 -1.8307 3.7872 48 1 1.5052 -2.9730 3.3331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717201474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:35 Heat of formation + Delta-G solvation = -25.321943 kcal Electronic energy + Delta-G solvation = -29254.988524 eV Core-core repulsion = 25310.581321 eV Total energy + Delta-G solvation = -3944.407203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86283 -40.98711 -39.54904 -38.59673 -36.29100 -34.32839 -33.47097 -33.31666 -33.11330 -31.48673 -30.77532 -27.98306 -26.18205 -25.66391 -24.90633 -24.40005 -23.60739 -22.00209 -21.20648 -20.80267 -19.59857 -18.64731 -18.54493 -17.46466 -17.03792 -16.93382 -16.87317 -16.69393 -16.08556 -15.92404 -15.57786 -15.48492 -15.17006 -15.01357 -14.44217 -14.29249 -14.06956 -13.99469 -13.92543 -13.49756 -13.39395 -13.23663 -13.13972 -12.92608 -12.78705 -12.73181 -12.35146 -12.21907 -12.11829 -11.94108 -11.75985 -11.57269 -11.20484 -11.12028 -10.92643 -10.77523 -10.59436 -10.45635 -10.00919 -9.50236 -8.64121 -7.83518 -5.23079 0.19502 0.31333 1.42741 1.45779 1.47591 1.54845 1.56832 2.49892 2.53483 2.82006 3.27098 3.29497 3.58176 3.63028 3.85117 3.96417 4.02865 4.05776 4.10715 4.13071 4.22299 4.33163 4.36798 4.49638 4.63827 4.65224 4.68407 4.74731 4.79973 4.87639 4.90078 5.04739 5.06561 5.08344 5.18562 5.28225 5.29327 5.29472 5.40733 5.50384 5.53520 5.65998 5.67144 5.78982 6.18423 6.21044 6.42679 6.55467 6.84921 7.19416 7.24614 7.93383 8.40460 9.20670 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002735 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.316106 B =10234.896272 C =11023.106175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 H 0.123 0.877 4 O -0.309 6.309 5 C 0.292 3.708 6 C -0.211 4.211 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.503 3.497 12 O -0.579 6.579 13 N -0.702 5.702 14 C 0.168 3.832 15 H 0.037 0.963 16 C -0.105 4.105 17 C -0.125 4.125 18 C 0.167 3.833 19 N -0.603 5.603 20 C -0.259 4.259 21 H 0.057 0.943 22 C -0.046 4.046 23 N -0.915 5.915 24 Si 0.954 3.046 25 H -0.272 1.272 26 H -0.301 1.301 27 H -0.286 1.286 28 C 0.156 3.844 29 C -0.140 4.140 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.416 0.584 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.245 0.755 45 H 0.026 0.974 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.272 15.381 -17.100 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.141 0.859 4 O -0.216 6.216 5 C 0.114 3.886 6 C -0.231 4.231 7 C -0.062 4.062 8 C -0.223 4.223 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.289 3.711 12 O -0.458 6.458 13 N -0.356 5.356 14 C 0.064 3.936 15 H 0.055 0.945 16 C -0.143 4.143 17 C -0.164 4.164 18 C 0.044 3.956 19 N -0.325 5.325 20 C -0.389 4.389 21 H 0.075 0.925 22 C -0.242 4.242 23 N -0.561 5.561 24 Si 0.784 3.216 25 H -0.197 1.197 26 H -0.229 1.229 27 H -0.212 1.212 28 C 0.027 3.973 29 C -0.182 4.182 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.208 0.792 37 H 0.255 0.745 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -11.889 14.758 -16.298 24.995 hybrid contribution 1.279 -1.298 -0.531 1.898 sum -10.610 13.460 -16.829 24.020 Atomic orbital electron populations 1.22130 0.89964 1.03425 1.05381 1.22129 0.97294 0.97279 0.81085 0.85918 1.86359 1.80628 1.35974 1.18637 1.20189 0.93107 0.88245 0.87016 1.21347 1.06943 1.02776 0.92077 1.21853 0.92873 0.93810 0.97649 1.22428 1.03161 0.96169 1.00588 1.23093 0.92108 1.00340 0.87166 1.67233 1.22575 1.04238 1.34137 1.20945 0.79941 0.84402 0.85852 1.90766 1.39341 1.28402 1.87266 1.46123 1.53183 1.31923 1.04374 1.20857 0.96737 0.92522 0.83448 0.94455 1.21277 0.99440 0.97846 0.95716 1.20757 0.97611 0.97934 1.00083 1.20135 0.97254 0.85044 0.93204 1.44464 1.12163 1.11428 1.64454 1.19397 0.88576 0.86858 1.44080 0.92525 1.25528 0.97938 0.98995 1.01718 1.70142 1.08125 1.25275 1.52608 0.85401 0.78791 0.80471 0.76931 1.19714 1.22925 1.21202 1.20502 0.86636 0.98674 0.91478 1.23178 0.98770 0.96458 0.99826 0.92445 0.87471 0.90040 0.84487 0.81033 0.80887 0.79227 0.74538 0.89407 0.89353 0.92553 0.93433 0.92673 0.94614 0.94580 0.95535 0.91865 0.89711 0.96751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.43 71.98 0.68 -2.35 16 2 C 0.08 2.28 2.91 29.85 0.09 2.37 16 3 H 0.12 3.06 6.99 -2.39 -0.02 3.05 16 4 O -0.31 -10.19 9.29 -70.90 -0.66 -10.85 16 5 C 0.29 7.90 7.45 84.79 0.63 8.53 16 6 C -0.21 -4.70 10.04 22.46 0.23 -4.47 16 7 C -0.04 -0.52 10.17 22.45 0.23 -0.29 16 8 C -0.20 -2.32 10.11 22.37 0.23 -2.10 16 9 C 0.13 1.89 11.17 84.63 0.95 2.83 16 10 N -0.56 -12.54 8.65 -308.95 -2.67 -15.21 16 11 C 0.50 18.28 7.18 87.66 0.63 18.91 16 12 O -0.58 -28.92 16.17 16.00 0.26 -28.66 16 13 N -0.70 -21.33 4.87 -443.94 -2.16 -23.49 16 14 C 0.17 6.49 2.22 44.69 0.10 6.59 16 15 H 0.04 1.98 6.27 -2.39 -0.01 1.97 16 16 C -0.11 -3.41 5.34 29.52 0.16 -3.25 16 17 C -0.12 -5.23 5.02 28.36 0.14 -5.09 16 18 C 0.17 7.67 5.24 83.58 0.44 8.11 16 19 N -0.60 -30.10 2.60 -707.84 -1.84 -31.94 16 20 C -0.26 -14.76 9.63 84.03 0.81 -13.95 16 21 H 0.06 3.28 7.89 -2.91 -0.02 3.25 16 22 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 23 N -0.92 -54.24 9.43 21.65 0.20 -54.04 16 24 Si 0.95 47.34 29.60 68.60 2.03 49.37 16 25 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 26 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 C 0.16 6.43 5.17 87.59 0.45 6.89 16 29 C -0.14 -5.49 5.98 31.87 0.19 -5.30 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.46 7.56 -2.38 -0.02 1.44 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.42 8.40 7.90 -92.70 -0.73 7.67 16 38 H 0.09 2.28 7.85 -2.39 -0.02 2.26 16 39 H 0.09 2.50 6.29 -2.39 -0.02 2.49 16 40 H 0.06 2.96 5.29 -2.39 -0.01 2.95 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 2.93 6.05 -2.39 -0.01 2.91 16 43 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 44 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.03 1.12 7.99 -2.38 -0.02 1.10 16 46 H 0.06 2.19 6.89 -2.39 -0.02 2.17 16 47 H 0.08 2.63 8.13 -2.38 -0.02 2.61 16 48 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -81.29 380.21 1.76 -79.54 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.24 Total: 20.08 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.36 Total: 15.19 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -6.47 Total: -124.68 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.40 Total: -39.51 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -81.29 1.76 -79.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717201474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.214 kcal (2) G-P(sol) polarization free energy of solvation -81.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds