Wall clock time and date at job start Tue Mar 31 2020 17:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.08997 * 110.29101 * 305.69751 * 8 7 6 10 10 C 1.54547 * 110.32928 * 183.55888 * 8 7 6 11 11 C 1.54738 * 104.07287 * 217.47428 * 10 8 7 12 12 C 1.53463 * 103.72310 * 0.76676 * 11 10 8 13 13 C 1.52889 * 115.58105 * 252.69853 * 12 11 10 14 14 N 1.47790 * 85.78095 * 219.73202 * 13 12 11 15 15 C 1.36934 * 134.39956 * 203.85190 * 14 13 12 16 16 H 1.07996 * 119.99797 * 180.02562 * 15 14 13 17 17 C 1.38814 * 120.00055 * 0.03031 * 15 14 13 18 18 N 1.31615 * 120.00402 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99799 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47150 * 90.00127 * 19 17 15 21 21 H 1.48499 * 109.47087 * 209.99849 * 19 17 15 22 22 H 1.48500 * 109.47558 * 330.00255 * 19 17 15 23 23 C 1.47788 * 91.19554 * 23.87240 * 14 13 12 24 24 O 1.43344 * 106.32681 * 22.63915 * 12 11 10 25 25 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 26 26 C 1.36335 * 125.63291 * 59.69717 * 25 2 1 27 27 C 1.34856 * 108.22058 * 179.83131 * 26 25 2 28 28 C 1.40897 * 107.41042 * 0.41985 * 27 26 25 29 29 C 1.34848 * 107.41775 * 359.73918 * 28 27 26 30 30 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 32 32 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 35 35 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 36 36 H 1.09003 * 110.51014 * 336.12034 * 10 8 7 37 37 H 1.08999 * 110.51047 * 98.68985 * 10 8 7 38 38 H 1.08995 * 110.57568 * 119.33089 * 11 10 8 39 39 H 1.09009 * 110.57309 * 242.06110 * 11 10 8 40 40 H 1.08999 * 113.81857 * 333.94388 * 13 12 11 41 41 H 1.08998 * 113.82094 * 105.51984 * 13 12 11 42 42 H 0.96993 * 120.00323 * 180.02562 * 18 17 15 43 43 H 1.08999 * 113.81694 * 221.91114 * 23 14 13 44 44 H 1.08996 * 113.93284 * 90.35498 * 23 14 13 45 45 H 1.08006 * 125.89282 * 359.95982 * 26 25 2 46 46 H 1.07992 * 126.29534 * 180.15999 * 27 26 25 47 47 H 1.08001 * 126.28659 * 179.73307 * 28 27 26 48 48 H 1.08001 * 125.88915 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 6 1.6946 -0.2128 -4.8999 9 1 0.6094 -0.1168 -4.8681 10 6 2.1294 -0.9723 -6.1737 11 6 2.4623 0.1500 -7.1857 12 6 2.2075 1.4404 -6.3951 13 6 0.9537 2.2206 -6.7911 14 7 1.7813 3.4311 -6.6068 15 6 1.5095 4.7447 -6.3317 16 1 2.3171 5.4563 -6.2444 17 6 0.1960 5.1615 -6.1648 18 7 -0.7883 4.2944 -6.2715 19 14 -0.1746 6.9534 -5.7887 20 1 -0.3615 7.6976 -7.0602 21 1 -1.4144 7.0425 -4.9762 22 1 0.9574 7.5446 -5.0310 23 6 3.0191 2.6577 -6.8386 24 8 2.3114 1.0909 -5.0089 25 7 2.0183 -0.6905 1.1963 26 6 1.7560 -1.9866 1.5280 27 6 2.3799 -2.2586 2.6922 28 6 3.0441 -1.0844 3.0988 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5388 -2.5436 34 1 3.2901 -0.9367 -3.6464 35 1 1.8372 -1.9650 -3.6549 36 1 3.0119 -1.5800 -5.9735 37 1 1.3146 -1.5942 -6.5444 38 1 3.5057 0.0898 -7.4950 39 1 1.8032 0.0924 -8.0521 40 1 0.6393 2.0549 -7.8215 41 1 0.1364 2.1329 -6.0753 42 1 -1.7061 4.5857 -6.1553 43 1 3.8326 2.9154 -6.1604 44 1 3.3298 2.6231 -7.8828 45 1 1.1540 -2.6773 0.9559 46 1 2.3688 -3.2015 3.2184 47 1 3.6356 -0.9620 3.9941 48 1 3.1746 0.8733 2.1807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717223087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:31 Heat of formation + Delta-G solvation = 14.810522 kcal Electronic energy + Delta-G solvation = -28919.321679 eV Core-core repulsion = 24976.654750 eV Total energy + Delta-G solvation = -3942.666929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.34643 -41.39894 -40.44825 -37.97913 -35.79484 -35.22306 -34.08053 -33.05872 -31.02991 -30.11783 -29.58752 -28.61886 -26.80873 -26.02984 -24.86543 -23.30055 -22.25686 -21.90584 -21.34625 -20.60155 -20.53839 -18.87766 -18.68789 -18.03961 -17.45906 -17.06437 -16.89412 -16.28678 -16.12791 -15.88090 -15.52153 -15.25109 -14.98356 -14.73494 -14.50679 -14.43386 -14.27658 -14.18925 -13.73669 -13.41761 -13.23373 -13.15592 -13.08402 -12.96729 -12.94686 -12.85199 -12.64629 -12.61652 -12.56193 -12.27627 -12.19043 -11.65950 -11.32600 -11.24259 -11.09221 -10.90782 -10.43903 -10.24096 -9.53771 -9.01617 -8.91509 -7.89641 -5.22030 1.26042 1.38434 1.45334 1.46536 1.55208 1.79426 2.18569 2.23771 2.46856 2.74965 3.29020 3.39718 3.43569 3.61144 3.72773 3.74666 3.77946 3.86567 4.03493 4.10892 4.16244 4.37883 4.41163 4.50718 4.54039 4.56266 4.58772 4.73206 4.74391 4.78518 4.80330 4.90468 4.97862 5.03033 5.04340 5.09363 5.14941 5.21152 5.29060 5.40823 5.40949 5.42909 5.51714 5.93076 6.11508 6.16296 6.26200 6.33997 6.49804 6.92993 6.99687 7.60651 8.55539 9.26862 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.002921 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.601600 B = 9584.419985 C =11232.507971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.114 3.886 3 H 0.142 0.858 4 C 0.504 3.496 5 O -0.564 6.564 6 N -0.711 5.711 7 C 0.136 3.864 8 C 0.059 3.941 9 H 0.073 0.927 10 C -0.135 4.135 11 C -0.133 4.133 12 C 0.077 3.923 13 C 0.152 3.848 14 N -0.639 5.639 15 C -0.234 4.234 16 H 0.078 0.922 17 C -0.063 4.063 18 N -0.950 5.950 19 Si 0.976 3.024 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.271 1.271 23 C 0.124 3.876 24 O -0.359 6.359 25 N -0.436 5.436 26 C -0.001 4.001 27 C -0.226 4.226 28 C -0.215 4.215 29 C -0.028 4.028 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.248 0.752 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.157 0.843 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -13.470 9.167 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 H 0.159 0.841 4 C 0.289 3.711 5 O -0.443 6.443 6 N -0.363 5.363 7 C 0.013 3.987 8 C 0.001 3.999 9 H 0.091 0.909 10 C -0.173 4.173 11 C -0.171 4.171 12 C 0.036 3.964 13 C 0.026 3.974 14 N -0.365 5.365 15 C -0.362 4.362 16 H 0.096 0.904 17 C -0.256 4.256 18 N -0.599 5.599 19 Si 0.804 3.196 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.000 4.000 24 O -0.279 6.279 25 N -0.113 5.113 26 C -0.131 4.131 27 C -0.250 4.250 28 C -0.239 4.239 29 C -0.157 4.157 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.174 0.826 46 H 0.161 0.839 47 H 0.166 0.834 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.619 -13.597 9.173 16.796 hybrid contribution -0.699 1.478 -0.240 1.652 sum 2.920 -12.118 8.933 15.335 Atomic orbital electron populations 1.22123 0.89323 1.04217 1.05389 1.21437 0.98224 0.97812 0.81702 0.84077 1.20942 0.80098 0.84646 0.85408 1.90743 1.38934 1.27631 1.86975 1.45930 1.52986 1.32372 1.05011 1.21458 0.99503 0.96037 0.81712 1.23385 0.97553 0.83475 0.95498 0.90947 1.22895 1.03648 0.97814 0.92902 1.22700 1.03715 0.92037 0.98692 1.23333 0.96744 0.94148 0.82184 1.22536 0.94054 0.83705 0.97079 1.46291 1.03436 1.04753 1.82045 1.19359 0.92458 0.84396 1.40033 0.90418 1.25533 0.95251 1.01853 1.02976 1.69980 0.98407 1.34222 1.57291 0.85126 0.77257 0.79730 0.77487 1.21471 1.21768 1.19636 1.22732 0.90742 0.87957 0.98589 1.88987 1.79235 1.34489 1.25143 1.43886 1.39739 1.10562 1.17093 1.21817 1.06164 0.86265 0.98818 1.21131 1.05228 1.00045 0.98600 1.21152 1.06930 0.93850 1.01993 1.22269 1.01130 1.00953 0.91313 0.91361 0.89462 0.88692 0.75061 0.91685 0.88584 0.88836 0.88156 0.88979 0.89434 0.95295 0.93822 0.94280 0.93288 0.91290 0.82558 0.83876 0.83407 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.13 71.98 0.66 -1.64 16 2 C 0.11 2.24 3.36 44.24 0.15 2.39 16 3 H 0.14 2.29 8.06 -2.39 -0.02 2.27 16 4 C 0.50 12.49 7.11 87.66 0.62 13.12 16 5 O -0.56 -18.22 15.47 -3.04 -0.05 -18.27 16 6 N -0.71 -16.31 5.44 -463.05 -2.52 -18.83 16 7 C 0.14 3.12 5.27 86.38 0.46 3.57 16 8 C 0.06 1.47 3.33 31.12 0.10 1.57 16 9 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 10 C -0.13 -2.65 6.65 31.71 0.21 -2.44 16 11 C -0.13 -3.23 6.49 31.34 0.20 -3.03 16 12 C 0.08 2.70 1.28 -10.66 -0.01 2.69 16 13 C 0.15 6.90 6.99 86.09 0.60 7.50 16 14 N -0.64 -32.59 3.71 -740.98 -2.75 -35.33 16 15 C -0.23 -13.16 10.70 84.03 0.90 -12.26 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 18 N -0.95 -55.82 11.40 21.65 0.25 -55.58 16 19 Si 0.98 45.14 29.55 68.60 2.03 47.16 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C 0.12 4.94 8.47 86.09 0.73 5.67 16 24 O -0.36 -12.49 11.13 -148.98 -1.66 -14.15 16 25 N -0.44 -10.10 2.40 -505.90 -1.21 -11.31 16 26 C 0.00 -0.02 9.57 83.22 0.80 0.78 16 27 C -0.23 -5.42 10.86 22.14 0.24 -5.18 16 28 C -0.21 -4.90 10.86 22.14 0.24 -4.66 16 29 C -0.03 -0.62 11.39 83.21 0.95 0.33 16 30 H 0.07 1.06 7.91 -2.39 -0.02 1.05 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.25 7.56 -2.39 -0.02 1.23 16 33 H 0.41 9.01 7.89 -92.71 -0.73 8.28 16 34 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.54 7.87 -2.39 -0.02 1.52 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 39 H 0.09 2.01 7.84 -2.38 -0.02 1.99 16 40 H 0.03 1.33 7.96 -2.39 -0.02 1.31 16 41 H 0.04 2.24 7.20 -2.39 -0.02 2.23 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 45 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 46 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 47 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 48 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -75.09 393.16 1.62 -73.47 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.22 Total: 27.53 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 7.31 Total: 5.31 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -6.23 Total: -121.05 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.71 Total: -32.42 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.09 1.62 -73.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717223087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.281 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds