Wall clock time and date at job start Tue Mar 31 2020 18:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47296 * 2 1 4 4 C 1.36930 * 120.00346 * 275.14256 * 3 2 1 5 5 H 1.08007 * 120.00196 * 36.76402 * 4 3 2 6 6 C 1.38811 * 120.00242 * 216.76428 * 4 3 2 7 7 N 1.31622 * 119.99715 * 21.41778 * 6 4 3 8 8 Si 1.86803 * 120.00309 * 201.41557 * 6 4 3 9 9 H 1.48504 * 109.46641 * 60.00224 * 8 6 4 10 10 H 1.48497 * 109.47041 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47326 * 300.00153 * 8 6 4 12 12 C 1.46506 * 119.99828 * 95.13709 * 3 2 1 13 13 C 1.52994 * 109.47339 * 270.00331 * 12 3 2 14 14 N 1.46499 * 109.47076 * 180.02562 * 13 12 3 15 15 C 1.34776 * 119.99874 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00370 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.50704 * 109.46839 * 179.97438 * 17 15 14 19 19 C 1.38135 * 120.03627 * 264.99562 * 18 17 15 20 20 C 1.38258 * 120.06893 * 179.97438 * 19 18 17 21 21 C 1.38299 * 120.14040 * 0.04764 * 20 19 18 22 22 C 1.38087 * 120.07716 * 359.97438 * 21 20 19 23 23 C 1.38849 * 120.03306 * 84.72503 * 18 17 15 24 24 N 1.39926 * 120.07422 * 359.97438 * 23 18 17 25 25 C 1.34777 * 120.00076 * 150.92352 * 24 23 18 26 26 C 1.50702 * 119.99841 * 184.44863 * 25 24 23 27 27 O 1.21290 * 120.00286 * 4.44545 * 25 24 23 28 28 H 1.08998 * 109.47192 * 299.99914 * 1 2 3 29 29 H 1.09006 * 109.47292 * 59.99868 * 1 2 3 30 30 H 1.08997 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46503 * 240.00353 * 2 1 3 32 32 H 1.08995 * 109.46848 * 120.00313 * 2 1 3 33 33 H 0.96998 * 119.99692 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47084 * 149.99730 * 12 3 2 35 35 H 1.09003 * 109.46618 * 30.00251 * 12 3 2 36 36 H 1.09001 * 109.47231 * 60.00104 * 13 12 3 37 37 H 1.09003 * 109.47340 * 300.00100 * 13 12 3 38 38 H 0.96999 * 120.00181 * 359.97438 * 14 13 12 39 39 H 1.09003 * 109.46769 * 299.99703 * 17 15 14 40 40 H 1.09001 * 109.47086 * 59.99891 * 17 15 14 41 41 H 1.07996 * 119.96010 * 359.97438 * 19 18 17 42 42 H 1.07994 * 119.92663 * 180.02562 * 20 19 18 43 43 H 1.08005 * 119.96200 * 179.97438 * 21 20 19 44 44 H 1.07996 * 120.04143 * 180.02562 * 22 21 20 45 45 H 0.96998 * 120.00180 * 330.92744 * 24 23 18 46 46 H 1.08993 * 109.47094 * 359.97438 * 26 25 24 47 47 H 1.08999 * 109.47278 * 120.00500 * 26 25 24 48 48 H 1.09004 * 109.46934 * 240.00008 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1464 2.0622 -1.1810 5 1 1.4233 1.9161 -1.9699 6 6 3.2056 2.9404 -1.3646 7 7 4.2914 2.8245 -0.6297 8 14 3.0902 4.2865 -2.6546 9 1 1.9395 5.1723 -2.3438 10 1 4.3429 5.0838 -2.6514 11 1 2.8960 3.6740 -3.9933 12 6 2.3697 2.0339 1.2637 13 6 1.1375 2.7400 1.8328 14 7 1.4890 3.3932 3.0962 15 6 0.5545 4.0805 3.7822 16 8 -0.5773 4.1588 3.3535 17 6 0.9159 4.7520 5.0821 18 6 -0.2978 5.4476 5.6426 19 6 -0.5048 6.7895 5.3883 20 6 -1.6183 7.4282 5.9017 21 6 -2.5277 6.7266 6.6721 22 6 -2.3264 5.3851 6.9304 23 6 -1.2121 4.7390 6.4106 24 7 -1.0087 3.3782 6.6650 25 6 -1.4810 2.8269 7.8005 26 6 -1.1762 1.3865 8.1223 27 8 -2.1513 3.4900 8.5635 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.0317 3.4379 -0.7582 34 1 3.1587 2.7651 1.0879 35 1 2.7199 1.2851 1.9742 36 1 0.3485 2.0087 2.0087 37 1 0.7871 3.4887 1.1223 38 1 2.3941 3.3303 3.4393 39 1 1.2666 4.0033 5.7925 40 1 1.7046 5.4835 4.9062 41 1 0.2040 7.3401 4.7877 42 1 -1.7780 8.4772 5.7011 43 1 -3.3964 7.2285 7.0721 44 1 -3.0371 4.8378 7.5317 45 1 -0.5276 2.8316 6.0241 46 1 -0.5673 0.9575 7.3266 47 1 -0.6330 1.3321 9.0657 48 1 -2.1085 0.8281 8.2072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731812901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:45 Heat of formation + Delta-G solvation = -50.601962 kcal Electronic energy + Delta-G solvation = -28630.937902 eV Core-core repulsion = 24685.434475 eV Total energy + Delta-G solvation = -3945.503427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84151 -40.59856 -39.34010 -38.06011 -35.91030 -35.55822 -33.84203 -33.74418 -31.85581 -31.36928 -29.92705 -29.35132 -28.00072 -26.03973 -24.12331 -23.64930 -22.57815 -22.11573 -21.48985 -21.24113 -18.90835 -18.67768 -17.99869 -17.82500 -17.23573 -17.01898 -16.67963 -16.42900 -16.29455 -15.82296 -15.48931 -15.40085 -15.21279 -14.83311 -14.59756 -14.40520 -14.13201 -14.06403 -13.79406 -13.66218 -13.41010 -13.24602 -13.12592 -13.03679 -12.97061 -12.61885 -12.44541 -12.39628 -12.28551 -12.22549 -12.00778 -11.66558 -11.49575 -11.49061 -10.96308 -10.80532 -10.53672 -9.97874 -9.73187 -9.07540 -8.59059 -7.85303 -5.47031 0.26841 0.43295 1.44543 1.48107 1.53890 1.54063 1.66333 2.07160 2.25078 2.51221 2.89643 3.22543 3.60948 3.73381 3.76793 3.90083 4.05683 4.19097 4.28564 4.34621 4.36665 4.45489 4.48951 4.49546 4.54138 4.60685 4.69131 4.72796 4.78341 4.83867 4.86076 5.01964 5.09421 5.10087 5.27215 5.30031 5.30339 5.41065 5.47387 5.53560 5.57154 5.60735 5.67567 5.78996 6.08845 6.34848 6.45541 6.66477 7.01864 7.16044 7.33066 7.84859 8.35261 9.10039 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.002879 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.583917 B = 9723.327813 C =11024.240077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.271 4.271 5 H 0.050 0.950 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.948 3.052 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.143 3.857 13 C 0.121 3.879 14 N -0.711 5.711 15 C 0.505 3.495 16 O -0.581 6.581 17 C -0.094 4.094 18 C -0.103 4.103 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.154 4.154 23 C 0.142 3.858 24 N -0.663 5.663 25 C 0.504 3.496 26 C -0.163 4.163 27 O -0.570 6.570 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.414 0.586 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.417 0.583 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 1.005 18.134 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.402 4.402 5 H 0.067 0.933 6 C -0.225 4.225 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.214 1.214 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.016 3.984 13 C -0.006 4.006 14 N -0.363 5.363 15 C 0.292 3.708 16 O -0.461 6.461 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.159 4.159 21 C -0.129 4.129 22 C -0.174 4.174 23 C 0.047 3.953 24 N -0.308 5.308 25 C 0.295 3.705 26 C -0.222 4.222 27 O -0.449 6.449 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.250 0.750 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.150 0.850 45 H 0.255 0.745 46 H 0.120 0.880 47 H 0.132 0.868 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.450 1.464 18.357 19.512 hybrid contribution 0.426 0.569 -1.240 1.429 sum -6.024 2.033 17.117 18.260 Atomic orbital electron populations 1.22219 0.98088 1.00801 1.00312 1.21005 0.93071 0.85438 0.99335 1.43863 1.76384 1.09652 1.02051 1.19121 1.05109 1.21377 0.94580 0.93276 1.25679 0.94042 1.02736 1.00001 1.70052 1.04000 1.37671 1.43444 0.85657 0.76570 0.80087 0.80026 1.21407 1.21273 1.20221 1.20967 0.94519 0.96867 0.86047 1.21878 0.99832 0.95186 0.83692 1.45973 1.14176 1.52955 1.23225 1.21150 0.84700 0.78322 0.86662 1.90726 1.22545 1.61896 1.70910 1.20674 0.97448 1.01920 0.93342 1.19277 0.96034 0.94404 1.00876 1.21171 0.98537 0.93505 0.98659 1.21392 0.94705 1.01268 0.98560 1.21334 0.99911 0.93654 0.97991 1.21500 0.97139 0.96333 1.02412 1.17795 0.94487 0.84285 0.98748 1.43762 1.56693 1.08156 1.22156 1.21890 0.77664 0.91667 0.79249 1.21931 1.05856 0.88619 1.05821 1.90657 1.39282 1.64845 1.50118 0.93914 0.94997 0.91266 0.94674 0.92686 0.93654 0.90710 0.93375 0.93289 0.95860 0.74977 0.85587 0.84940 0.84168 0.83626 0.84071 0.85022 0.74482 0.88008 0.86767 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 10.21 71.98 0.73 -4.59 16 2 C 0.14 5.36 6.44 86.38 0.56 5.91 16 3 N -0.60 -27.95 2.44 -702.01 -1.71 -29.66 16 4 C -0.27 -14.39 9.46 84.03 0.80 -13.59 16 5 H 0.05 2.66 7.92 -2.91 -0.02 2.64 16 6 C -0.03 -1.40 4.96 84.86 0.42 -0.98 16 7 N -0.91 -49.30 11.41 21.65 0.25 -49.06 16 8 Si 0.95 43.47 29.60 68.60 2.03 45.50 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.14 5.93 5.45 86.38 0.47 6.40 16 13 C 0.12 4.56 6.00 86.38 0.52 5.08 16 14 N -0.71 -20.06 5.56 -463.06 -2.57 -22.63 16 15 C 0.50 14.24 7.50 87.66 0.66 14.90 16 16 O -0.58 -22.16 16.03 -3.03 -0.05 -22.21 16 17 C -0.09 -1.81 5.22 29.11 0.15 -1.66 16 18 C -0.10 -2.48 4.39 -19.74 -0.09 -2.57 16 19 C -0.10 -2.30 9.68 22.25 0.22 -2.09 16 20 C -0.14 -3.06 10.04 22.29 0.22 -2.84 16 21 C -0.11 -2.60 10.04 22.25 0.22 -2.38 16 22 C -0.15 -4.25 8.76 22.39 0.20 -4.06 16 23 C 0.14 3.71 6.39 38.15 0.24 3.95 16 24 N -0.66 -14.10 4.91 -303.49 -1.49 -15.59 16 25 C 0.50 10.49 7.81 87.66 0.69 11.17 16 26 C -0.16 -1.71 10.39 71.24 0.74 -0.97 16 27 O -0.57 -16.38 14.17 -3.06 -0.04 -16.42 16 28 H 0.04 1.47 6.63 -2.39 -0.02 1.45 16 29 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 33 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 34 H 0.08 3.56 5.46 -2.39 -0.01 3.54 16 35 H 0.05 1.78 7.86 -2.39 -0.02 1.76 16 36 H 0.05 1.87 6.63 -2.39 -0.02 1.86 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.41 9.05 8.47 -92.71 -0.79 8.27 16 39 H 0.13 1.66 7.35 -2.39 -0.02 1.64 16 40 H 0.13 1.91 8.05 -2.39 -0.02 1.89 16 41 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 44 H 0.13 3.94 5.75 -2.91 -0.02 3.92 16 45 H 0.42 7.41 7.27 -92.71 -0.67 6.74 16 46 H 0.10 0.62 7.92 -2.39 -0.02 0.60 16 47 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -73.87 396.59 2.68 -71.19 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.47 Total: 27.17 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.75 Total: 11.72 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -5.53 Total: -116.94 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.09 Total: -38.63 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -73.87 2.68 -71.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731812901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.584 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds