Wall clock time and date at job start Tue Mar 31 2020 18:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47120 * 2 1 4 4 C 1.46503 * 119.99787 * 278.31887 * 3 2 1 5 5 C 1.52993 * 109.47208 * 270.00067 * 4 3 2 6 6 N 1.46503 * 109.47208 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00025 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00344 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99870 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00285 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00006 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46805 * 90.00387 * 11 9 7 13 13 H 1.48500 * 109.47239 * 210.00132 * 11 9 7 14 14 H 1.48498 * 109.47242 * 330.00581 * 11 9 7 15 15 C 1.34774 * 120.00344 * 98.32042 * 3 2 1 16 16 O 1.21549 * 119.99942 * 186.35424 * 15 3 2 17 17 C 1.47851 * 119.99792 * 6.35390 * 15 3 2 18 18 C 1.39575 * 120.14321 * 150.53809 * 17 15 3 19 19 C 1.37953 * 119.85376 * 180.02562 * 18 17 15 20 20 C 1.38355 * 120.14459 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.85579 * 179.97438 * 20 19 18 22 22 N 1.46499 * 109.46747 * 90.00357 * 21 20 19 23 23 C 1.34782 * 120.00041 * 180.02562 * 22 21 20 24 24 C 1.50696 * 120.00395 * 180.02562 * 23 22 21 25 25 O 1.21281 * 119.99672 * 359.97438 * 23 22 21 26 26 C 1.38362 * 120.29417 * 0.23729 * 20 19 18 27 27 C 1.37962 * 120.14015 * 359.47992 * 26 20 19 28 28 H 1.08995 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46833 * 300.00161 * 1 2 3 30 30 H 1.09002 * 109.46952 * 60.00146 * 1 2 3 31 31 H 1.08994 * 109.47324 * 239.99668 * 2 1 3 32 32 H 1.09002 * 109.46952 * 119.99854 * 2 1 3 33 33 H 1.09003 * 109.46941 * 29.99993 * 4 3 2 34 34 H 1.09000 * 109.46994 * 149.99879 * 4 3 2 35 35 H 1.09000 * 109.47355 * 300.00275 * 5 4 3 36 36 H 1.09000 * 109.47296 * 59.99997 * 5 4 3 37 37 H 0.96997 * 119.99549 * 0.02562 * 6 5 4 38 38 H 0.97001 * 120.00526 * 179.97438 * 10 9 7 39 39 H 1.08003 * 120.07305 * 0.02562 * 18 17 15 40 40 H 1.08006 * 119.92790 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47420 * 210.00159 * 21 20 19 42 42 H 1.08995 * 109.46906 * 330.00680 * 21 20 19 43 43 H 0.97000 * 120.00493 * 359.97438 * 22 21 20 44 44 H 1.09005 * 109.47248 * 59.99155 * 24 23 22 45 45 H 1.08992 * 109.47446 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.46765 * 299.99473 * 24 23 22 47 47 H 1.07994 * 119.92969 * 179.74747 * 26 20 19 48 48 H 1.08002 * 120.07110 * 180.25300 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0895 2.1330 -1.2554 5 6 3.4598 1.9189 -1.9012 6 7 3.5307 2.6702 -3.1569 7 6 4.6700 2.6299 -3.9155 8 1 5.5165 2.0446 -3.5880 9 6 4.7373 3.3422 -5.1051 10 7 5.8325 3.3039 -5.8341 11 14 3.2735 4.3551 -5.6713 12 1 3.3854 5.7329 -5.1288 13 1 3.2521 4.4076 -7.1552 14 1 2.0192 3.7301 -5.1799 15 6 2.4023 1.9603 1.1549 16 8 2.6973 3.1393 1.1748 17 6 2.4645 1.1615 2.3974 18 6 3.3790 1.4926 3.3985 19 6 3.4323 0.7429 4.5553 20 6 2.5822 -0.3356 4.7240 21 6 2.6464 -1.1506 5.9901 22 7 1.7293 -0.5843 6.9823 23 6 1.6188 -1.1524 8.1995 24 6 0.6750 -0.5703 9.2200 25 8 2.2783 -2.1328 8.4732 26 6 1.6770 -0.6725 3.7333 27 6 1.6095 0.0726 2.5741 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.3101 1.7837 -1.9327 34 1 1.9453 3.1941 -1.0521 35 1 4.2392 2.2682 -1.2239 36 1 3.6040 0.8578 -2.1045 37 1 2.7706 3.1962 -3.4509 38 1 5.8794 3.8013 -6.6655 39 1 4.0434 2.3340 3.2678 40 1 4.1392 0.9983 5.3309 41 1 2.3585 -2.1796 5.7748 42 1 3.6630 -1.1322 6.3828 43 1 1.2021 0.2000 6.7636 44 1 -0.3416 -0.5893 8.8272 45 1 0.7215 -1.1596 10.1357 46 1 0.9623 0.4589 9.4350 47 1 1.0190 -1.5180 3.8695 48 1 0.8997 -0.1890 1.8033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732786180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:26 Heat of formation + Delta-G solvation = -2.873903 kcal Electronic energy + Delta-G solvation = -27729.969427 eV Core-core repulsion = 23786.535644 eV Total energy + Delta-G solvation = -3943.433783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93659 -40.02799 -38.75105 -36.56665 -35.49373 -34.82369 -32.56003 -31.89446 -31.27907 -30.59871 -30.21706 -28.28004 -26.43512 -23.96719 -23.72344 -23.04375 -22.11055 -21.36447 -21.09819 -19.69263 -17.70467 -17.67499 -17.46912 -16.90686 -16.58536 -16.00710 -15.75814 -15.52939 -15.17906 -14.75005 -14.43547 -14.25535 -14.01360 -13.79799 -13.76176 -13.59888 -13.41107 -13.25116 -13.04088 -12.96886 -12.70546 -12.63791 -12.47762 -12.25603 -11.79631 -11.61578 -11.47493 -11.19157 -11.17057 -11.01634 -10.75534 -10.44983 -10.18355 -9.90923 -9.60719 -9.60552 -9.32145 -9.17078 -8.90603 -8.67394 -7.25617 -5.76877 -3.13392 0.44743 0.96132 2.18122 2.50390 2.82741 2.96530 3.36926 3.40907 3.45452 3.50803 4.07056 4.26498 4.36174 4.40281 4.52164 4.59019 4.67634 4.77286 4.80268 4.87917 4.89720 4.96781 5.12149 5.16348 5.23915 5.30998 5.37785 5.41967 5.43551 5.45486 5.55877 5.59148 5.62128 5.71180 5.81597 5.87658 5.91371 5.94647 6.01522 6.07655 6.37599 6.46943 6.60663 6.76271 6.99832 7.33394 7.73666 7.97651 8.11010 8.41193 9.19565 9.91671 10.10833 11.41323 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028022 B = 0.001942 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.960879 B =14413.740797 C =14716.656245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 N -0.598 5.598 4 C 0.103 3.897 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.553 3.447 16 O -0.527 6.527 17 C -0.114 4.114 18 C -0.063 4.063 19 C -0.107 4.107 20 C -0.094 4.094 21 C 0.158 3.842 22 N -0.728 5.728 23 C 0.509 3.491 24 C -0.175 4.175 25 O -0.547 6.547 26 C -0.110 4.110 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.027 0.973 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.404 0.596 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.130 0.870 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.466 -10.237 27.413 33.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.054 4.054 3 N -0.330 5.330 4 C -0.019 4.019 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.374 4.374 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.581 5.581 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.342 3.658 16 O -0.404 6.404 17 C -0.118 4.118 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.095 4.095 21 C 0.035 3.965 22 N -0.381 5.381 23 C 0.297 3.703 24 C -0.234 4.234 25 O -0.424 6.424 26 C -0.128 4.128 27 C -0.139 4.139 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.238 0.762 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.148 0.852 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.590 -10.381 27.527 32.839 hybrid contribution -1.154 1.113 -0.829 1.805 sum -15.743 -9.268 26.699 32.351 Atomic orbital electron populations 1.22306 0.95725 1.02745 1.03038 1.22482 0.94433 0.83230 1.05256 1.47738 1.63906 1.14120 1.07269 1.21754 0.99119 0.97579 0.83458 1.20883 0.93829 0.95476 0.87967 1.42545 1.16366 1.58329 1.22668 1.19028 0.92299 1.25316 1.00771 0.89234 1.24673 0.97013 1.00151 0.97266 1.69702 1.26607 1.46229 1.15565 0.86522 0.83027 0.80900 0.77910 1.20962 1.21672 1.20375 1.18349 0.77315 0.86954 0.83228 1.90816 1.48460 1.15447 1.85646 1.20061 0.99155 0.97098 0.95467 1.21291 0.96658 0.98543 0.91692 1.21060 0.99074 0.94751 0.97651 1.20026 0.97078 0.96597 0.95769 1.20229 0.94724 0.96430 0.85078 1.46146 1.44977 1.33223 1.13756 1.20872 0.83168 0.83635 0.82653 1.21924 0.99426 1.03197 0.98881 1.90744 1.46159 1.26471 1.79049 1.21059 0.98463 1.00230 0.93062 1.22463 0.99572 0.93742 0.98167 0.90910 0.91952 0.91316 0.89773 0.87498 0.90374 0.89498 0.95180 0.95509 0.80649 0.93022 0.84515 0.85151 0.90326 0.90338 0.76187 0.89303 0.88876 0.89276 0.85240 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.13 37.16 0.34 -0.94 16 2 C 0.07 0.63 5.58 -4.04 -0.02 0.61 16 3 N -0.60 -7.93 2.48 -174.80 -0.43 -8.36 16 4 C 0.10 1.65 5.58 -4.04 -0.02 1.62 16 5 C 0.15 2.96 6.58 -4.04 -0.03 2.93 16 6 N -0.75 -18.42 5.41 -59.91 -0.32 -18.74 16 7 C -0.24 -7.11 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 10 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 11 Si 0.89 22.34 27.74 -169.99 -4.71 17.62 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 14 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 15 C 0.55 8.07 7.47 -12.33 -0.09 7.98 16 16 O -0.53 -9.82 16.25 5.32 0.09 -9.73 16 17 C -0.11 -1.27 5.59 -104.97 -0.59 -1.86 16 18 C -0.06 -0.64 9.60 -39.19 -0.38 -1.02 16 19 C -0.11 -0.82 9.68 -39.64 -0.38 -1.21 16 20 C -0.09 -0.63 5.25 -104.53 -0.55 -1.18 16 21 C 0.16 1.01 5.79 -5.19 -0.03 0.98 16 22 N -0.73 -4.00 5.55 -61.47 -0.34 -4.34 16 23 C 0.51 3.69 7.94 -10.98 -0.09 3.60 16 24 C -0.17 -0.60 10.32 36.00 0.37 -0.22 16 25 O -0.55 -6.55 17.09 5.56 0.09 -6.45 16 26 C -0.11 -0.71 9.68 -39.64 -0.38 -1.10 16 27 C -0.12 -0.98 7.49 -39.19 -0.29 -1.27 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 7.07 -51.93 -0.37 0.06 16 30 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 31 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.11 0.84 4.02 -52.11 -0.21 0.63 16 33 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 34 H 0.09 1.52 7.34 -51.93 -0.38 1.14 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.36 8.49 5.53 -40.82 -0.23 8.27 16 38 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 39 H 0.14 1.49 7.92 -52.48 -0.42 1.07 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 42 H 0.08 0.55 8.08 -51.93 -0.42 0.14 16 43 H 0.40 1.40 8.46 -40.82 -0.35 1.05 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 48 H 0.16 1.08 2.52 -52.49 -0.13 0.95 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -37.91 395.14 -8.43 -46.34 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.13 Total: 4.90 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.40 Total: 1.72 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.32 Total: -60.35 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.18 Total: -16.18 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.91 -8.43 -46.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732786180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.467 kcal (2) G-P(sol) polarization free energy of solvation -37.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds