Wall clock time and date at job start Tue Mar 31 2020 18:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47120 * 2 1 4 4 C 1.46503 * 119.99787 * 278.31887 * 3 2 1 5 5 C 1.52993 * 109.47208 * 270.00067 * 4 3 2 6 6 N 1.46503 * 109.47208 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00025 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00344 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99870 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00285 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00006 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46805 * 90.00387 * 11 9 7 13 13 H 1.48500 * 109.47239 * 210.00132 * 11 9 7 14 14 H 1.48498 * 109.47242 * 330.00581 * 11 9 7 15 15 C 1.34774 * 120.00344 * 98.32042 * 3 2 1 16 16 O 1.21549 * 119.99942 * 186.35424 * 15 3 2 17 17 C 1.47851 * 119.99792 * 6.35390 * 15 3 2 18 18 C 1.39575 * 120.14321 * 150.53809 * 17 15 3 19 19 C 1.37953 * 119.85376 * 180.02562 * 18 17 15 20 20 C 1.38355 * 120.14459 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.85579 * 179.97438 * 20 19 18 22 22 N 1.46499 * 109.46747 * 90.00357 * 21 20 19 23 23 C 1.34782 * 120.00041 * 180.02562 * 22 21 20 24 24 C 1.50696 * 120.00395 * 180.02562 * 23 22 21 25 25 O 1.21281 * 119.99672 * 359.97438 * 23 22 21 26 26 C 1.38362 * 120.29417 * 0.23729 * 20 19 18 27 27 C 1.37962 * 120.14015 * 359.47992 * 26 20 19 28 28 H 1.08995 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46833 * 300.00161 * 1 2 3 30 30 H 1.09002 * 109.46952 * 60.00146 * 1 2 3 31 31 H 1.08994 * 109.47324 * 239.99668 * 2 1 3 32 32 H 1.09002 * 109.46952 * 119.99854 * 2 1 3 33 33 H 1.09003 * 109.46941 * 29.99993 * 4 3 2 34 34 H 1.09000 * 109.46994 * 149.99879 * 4 3 2 35 35 H 1.09000 * 109.47355 * 300.00275 * 5 4 3 36 36 H 1.09000 * 109.47296 * 59.99997 * 5 4 3 37 37 H 0.96997 * 119.99549 * 0.02562 * 6 5 4 38 38 H 0.97001 * 120.00526 * 179.97438 * 10 9 7 39 39 H 1.08003 * 120.07305 * 0.02562 * 18 17 15 40 40 H 1.08006 * 119.92790 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47420 * 210.00159 * 21 20 19 42 42 H 1.08995 * 109.46906 * 330.00680 * 21 20 19 43 43 H 0.97000 * 120.00493 * 359.97438 * 22 21 20 44 44 H 1.09005 * 109.47248 * 59.99155 * 24 23 22 45 45 H 1.08992 * 109.47446 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.46765 * 299.99473 * 24 23 22 47 47 H 1.07994 * 119.92969 * 179.74747 * 26 20 19 48 48 H 1.08002 * 120.07110 * 180.25300 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0895 2.1330 -1.2554 5 6 3.4598 1.9189 -1.9012 6 7 3.5307 2.6702 -3.1569 7 6 4.6700 2.6299 -3.9155 8 1 5.5165 2.0446 -3.5880 9 6 4.7373 3.3422 -5.1051 10 7 5.8325 3.3039 -5.8341 11 14 3.2735 4.3551 -5.6713 12 1 3.3854 5.7329 -5.1288 13 1 3.2521 4.4076 -7.1552 14 1 2.0192 3.7301 -5.1799 15 6 2.4023 1.9603 1.1549 16 8 2.6973 3.1393 1.1748 17 6 2.4645 1.1615 2.3974 18 6 3.3790 1.4926 3.3985 19 6 3.4323 0.7429 4.5553 20 6 2.5822 -0.3356 4.7240 21 6 2.6464 -1.1506 5.9901 22 7 1.7293 -0.5843 6.9823 23 6 1.6188 -1.1524 8.1995 24 6 0.6750 -0.5703 9.2200 25 8 2.2783 -2.1328 8.4732 26 6 1.6770 -0.6725 3.7333 27 6 1.6095 0.0726 2.5741 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.3101 1.7837 -1.9327 34 1 1.9453 3.1941 -1.0521 35 1 4.2392 2.2682 -1.2239 36 1 3.6040 0.8578 -2.1045 37 1 2.7706 3.1962 -3.4509 38 1 5.8794 3.8013 -6.6655 39 1 4.0434 2.3340 3.2678 40 1 4.1392 0.9983 5.3309 41 1 2.3585 -2.1796 5.7748 42 1 3.6630 -1.1322 6.3828 43 1 1.2021 0.2000 6.7636 44 1 -0.3416 -0.5893 8.8272 45 1 0.7215 -1.1596 10.1357 46 1 0.9623 0.4589 9.4350 47 1 1.0190 -1.5180 3.8695 48 1 0.8997 -0.1890 1.8033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732786180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:25 Heat of formation + Delta-G solvation = -30.418178 kcal Electronic energy + Delta-G solvation = -27731.163836 eV Core-core repulsion = 23786.535644 eV Total energy + Delta-G solvation = -3944.628192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82336 -40.67313 -39.56609 -37.78281 -36.76206 -35.92783 -34.00988 -32.91076 -32.43513 -31.45150 -30.72914 -29.64178 -27.24175 -25.50262 -24.50445 -23.82002 -23.46390 -22.59355 -21.62635 -20.75893 -19.66223 -18.46913 -18.23697 -17.71619 -17.35036 -16.81040 -16.66872 -16.43829 -16.30631 -15.86516 -15.77060 -15.47644 -15.19945 -14.98877 -14.79891 -14.62880 -14.37910 -13.98519 -13.87368 -13.69315 -13.55728 -13.45486 -13.29146 -13.02819 -12.91267 -12.88765 -12.79066 -12.49083 -12.33703 -12.13400 -12.12110 -11.85631 -11.77718 -11.13344 -11.04995 -10.94360 -10.15099 -10.03504 -9.86860 -9.76030 -9.40147 -8.07551 -5.43923 -0.28366 0.32434 1.35362 1.41152 1.47577 1.58258 1.65902 1.84271 2.33563 2.45214 2.81970 3.23161 3.31714 3.60322 3.66042 3.76787 3.88348 3.99031 4.03210 4.07366 4.08432 4.23144 4.32234 4.34376 4.47717 4.53039 4.53774 4.59398 4.66168 4.71014 4.78739 4.84638 4.87433 4.98761 5.00549 5.00883 5.13155 5.19807 5.29686 5.37464 5.39495 5.45342 5.46424 5.68148 5.81755 6.14829 6.29481 6.56014 6.99128 7.02739 7.25494 7.73158 7.95023 9.13554 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028022 B = 0.001942 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.960879 B =14413.740797 C =14716.656245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 N -0.596 5.596 4 C 0.116 3.884 5 C 0.150 3.850 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.051 0.949 9 C -0.061 4.061 10 N -0.981 5.981 11 Si 0.960 3.040 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.244 1.244 15 C 0.546 3.454 16 O -0.582 6.582 17 C -0.136 4.136 18 C -0.081 4.081 19 C -0.103 4.103 20 C -0.080 4.080 21 C 0.160 3.840 22 N -0.717 5.717 23 C 0.505 3.495 24 C -0.168 4.168 25 O -0.601 6.601 26 C -0.098 4.098 27 C -0.113 4.113 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.001 0.999 36 H 0.034 0.966 37 H 0.369 0.631 38 H 0.260 0.740 39 H 0.117 0.883 40 H 0.144 0.856 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.416 0.584 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.162 0.838 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.183 -11.481 28.758 36.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.060 4.060 3 N -0.327 5.327 4 C -0.007 4.007 5 C 0.022 3.978 6 N -0.400 5.400 7 C -0.375 4.375 8 H 0.070 0.930 9 C -0.253 4.253 10 N -0.631 5.631 11 Si 0.786 3.214 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.168 1.168 15 C 0.337 3.663 16 O -0.463 6.463 17 C -0.139 4.139 18 C -0.100 4.100 19 C -0.121 4.121 20 C -0.080 4.080 21 C 0.037 3.963 22 N -0.369 5.369 23 C 0.294 3.706 24 C -0.227 4.227 25 O -0.483 6.483 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.020 0.980 36 H 0.052 0.948 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.135 0.865 40 H 0.162 0.838 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.253 0.747 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.179 0.821 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -18.366 -11.653 28.896 36.168 hybrid contribution 0.108 1.410 -1.150 1.823 sum -18.258 -10.243 27.746 34.758 Atomic orbital electron populations 1.22286 0.93480 1.04662 1.02866 1.22839 0.96212 0.80782 1.06183 1.47844 1.63444 1.15504 1.05885 1.21437 0.96901 0.97411 0.84951 1.20944 0.95895 0.94922 0.86020 1.42476 1.15159 1.58916 1.23438 1.18973 0.92784 1.24429 1.01339 0.93045 1.25583 1.00514 1.01815 0.97401 1.69891 1.29332 1.47651 1.16195 0.85345 0.80114 0.78792 0.77153 1.20734 1.21606 1.16838 1.18999 0.76115 0.86664 0.84553 1.90774 1.50943 1.17903 1.86635 1.19895 1.01278 0.98511 0.94246 1.21249 0.97035 0.98906 0.92822 1.21159 0.99460 0.94603 0.96921 1.20082 0.96332 0.95677 0.95941 1.20162 0.94707 0.96485 0.84936 1.46067 1.44446 1.33259 1.13168 1.21554 0.82856 0.82839 0.83310 1.21936 0.99592 1.03748 0.97434 1.90724 1.48502 1.29004 1.80035 1.21376 0.98093 1.00318 0.91822 1.22582 0.98826 0.92452 0.99143 0.87885 0.91505 0.92163 0.89674 0.85863 0.87647 0.91219 0.98050 0.94810 0.79748 0.93095 0.86487 0.83791 0.90048 0.91083 0.74699 0.86985 0.89508 0.87317 0.82064 0.80288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.13 71.98 0.66 -1.20 16 2 C 0.06 0.97 5.58 86.38 0.48 1.45 16 3 N -0.60 -15.40 2.48 -825.22 -2.05 -17.44 16 4 C 0.12 3.65 5.58 86.38 0.48 4.13 16 5 C 0.15 6.14 6.58 86.38 0.57 6.70 16 6 N -0.75 -36.92 5.41 -343.46 -1.86 -38.78 16 7 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 8 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 9 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 10 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 11 Si 0.96 45.92 27.74 68.60 1.90 47.83 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 14 H -0.24 -10.26 6.52 99.48 0.65 -9.61 16 15 C 0.55 16.24 7.47 86.79 0.65 16.88 16 16 O -0.58 -22.88 16.25 -3.87 -0.06 -22.95 16 17 C -0.14 -2.94 5.59 -20.09 -0.11 -3.05 16 18 C -0.08 -1.68 9.60 22.52 0.22 -1.47 16 19 C -0.10 -1.46 9.68 22.23 0.22 -1.25 16 20 C -0.08 -0.86 5.25 -19.81 -0.10 -0.96 16 21 C 0.16 1.68 5.79 85.63 0.50 2.17 16 22 N -0.72 -6.03 5.55 -466.78 -2.59 -8.62 16 23 C 0.51 6.39 7.94 87.65 0.70 7.08 16 24 C -0.17 -0.71 10.32 71.23 0.74 0.02 16 25 O -0.60 -14.02 17.09 -3.03 -0.05 -14.07 16 26 C -0.10 -0.90 9.68 22.23 0.22 -0.69 16 27 C -0.11 -1.49 7.49 22.53 0.17 -1.32 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.68 7.07 -2.39 -0.02 0.66 16 30 H 0.06 0.78 7.94 -2.39 -0.02 0.76 16 31 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 32 H 0.12 1.58 4.02 -2.56 -0.01 1.57 16 33 H 0.11 2.74 7.87 -2.39 -0.02 2.72 16 34 H 0.07 2.46 7.34 -2.39 -0.02 2.44 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.37 16.82 5.53 -92.71 -0.51 16.31 16 38 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.12 2.81 7.92 -2.91 -0.02 2.79 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 42 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 43 H 0.42 1.53 8.46 -92.71 -0.78 0.75 16 44 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 45 H 0.09 0.52 8.12 -2.39 -0.02 0.50 16 46 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 48 H 0.18 1.71 2.52 -2.91 -0.01 1.70 16 Total: -1.00 -87.58 395.14 1.94 -85.64 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.36 Total: 20.58 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.71 Total: 11.55 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.19 Total: -128.59 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.11 Total: -37.01 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Total: -87.58 1.94 -85.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732786180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.220 kcal (2) G-P(sol) polarization free energy of solvation -87.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds