Wall clock time and date at job start Tue Mar 31 2020 17:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42896 * 109.47231 * 120.00066 * 2 1 3 5 5 C 1.42898 * 114.00068 * 270.00142 * 4 2 1 6 6 C 1.50698 * 109.47376 * 179.97438 * 5 4 2 7 7 C 1.38653 * 120.79094 * 269.71642 * 6 5 4 8 8 C 1.38198 * 119.16358 * 179.75155 * 7 6 5 9 9 N 1.31871 * 120.76443 * 0.53646 * 8 7 6 10 10 C 1.31867 * 121.72657 * 359.73387 * 9 8 7 11 11 C 1.38207 * 120.76403 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 O 1.21280 * 119.99972 * 245.00072 * 12 2 1 14 14 N 1.34770 * 120.00249 * 65.00069 * 12 2 1 15 15 C 1.46496 * 120.00282 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47410 * 180.02562 * 15 14 12 17 17 H 1.09001 * 110.88428 * 305.70538 * 16 15 14 18 18 C 1.55154 * 111.00590 * 181.82073 * 16 15 14 19 19 C 1.54369 * 102.91877 * 206.45421 * 18 16 15 20 20 N 1.47012 * 107.29147 * 22.14029 * 19 18 16 21 21 C 1.36943 * 125.64972 * 181.05645 * 20 19 18 22 22 H 1.07999 * 119.99606 * 180.02562 * 21 20 19 23 23 C 1.38802 * 120.00059 * 0.04178 * 21 20 19 24 24 N 1.31623 * 120.00100 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00283 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47122 * 89.99572 * 25 23 21 27 27 H 1.48505 * 109.47006 * 210.00020 * 25 23 21 28 28 H 1.48501 * 109.46879 * 329.99787 * 25 23 21 29 29 C 1.47423 * 108.70148 * 1.08895 * 20 19 18 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09002 * 109.47066 * 299.99587 * 5 4 2 34 34 H 1.08994 * 109.47737 * 59.99412 * 5 4 2 35 35 H 1.08005 * 120.41388 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.62072 * 180.29266 * 8 7 6 37 37 H 1.08000 * 119.61716 * 180.02562 * 10 9 8 38 38 H 1.07995 * 120.41786 * 179.97438 * 11 10 9 39 39 H 0.97008 * 120.00081 * 0.02562 * 14 12 2 40 40 H 1.09001 * 109.47578 * 300.00256 * 15 14 12 41 41 H 1.09004 * 109.47225 * 60.00279 * 15 14 12 42 42 H 1.08994 * 110.72196 * 324.79190 * 18 16 15 43 43 H 1.09007 * 110.71940 * 88.06402 * 18 16 15 44 44 H 1.09005 * 109.84778 * 262.73077 * 19 18 16 45 45 H 1.09002 * 110.02929 * 141.65483 * 19 18 16 46 46 H 0.97001 * 120.00343 * 179.97438 * 24 23 21 47 47 H 1.09004 * 110.37037 * 217.02827 * 29 20 19 48 48 H 1.09008 * 110.46018 * 94.76320 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7003 -0.6284 3.4613 7 6 1.8129 -1.2038 4.3580 8 6 2.3082 -1.9455 5.4137 9 7 3.6075 -2.0996 5.5788 10 6 4.4805 -1.5624 4.7492 11 6 4.0590 -0.8127 3.6674 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1215 14 7 1.7919 -0.1943 -2.4520 15 6 2.2806 -0.8846 -3.6481 16 6 1.8763 -0.0942 -4.8942 17 1 0.8012 0.0846 -4.9091 18 6 2.3376 -0.8187 -6.1863 19 6 2.4871 0.3390 -7.1965 20 7 2.6665 1.5751 -6.4211 21 6 2.8142 2.8316 -6.9452 22 1 2.9410 3.6792 -6.2880 23 6 2.8006 3.0159 -8.3209 24 7 2.6462 1.9828 -9.1217 25 14 3.0027 4.7298 -9.0358 26 1 4.4442 5.0045 -9.2629 27 1 2.2727 4.8171 -10.3261 28 1 2.4517 5.7301 -8.0866 29 6 2.6619 1.2377 -4.9860 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9320 0.9513 2.0450 34 1 1.2539 0.6547 2.5588 35 1 0.7479 -1.0769 4.2309 36 1 1.6235 -2.4009 6.1138 37 1 5.5371 -1.7108 4.9166 38 1 4.7788 -0.3750 2.9917 39 1 1.2958 0.6348 -2.5392 40 1 3.3670 -0.9625 -3.6044 41 1 1.8463 -1.8833 -3.6942 42 1 3.2934 -1.3181 -6.0282 43 1 1.5812 -1.5285 -6.5214 44 1 1.5891 0.4132 -7.8099 45 1 3.3567 0.1702 -7.8317 46 1 2.6363 2.1116 -10.0831 47 1 2.1566 2.0165 -4.4148 48 1 3.6809 1.1029 -4.6230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753134925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:14 Heat of formation + Delta-G solvation = -46.177803 kcal Electronic energy + Delta-G solvation = -27576.518161 eV Core-core repulsion = 23631.206580 eV Total energy + Delta-G solvation = -3945.311581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.25707 -40.92402 -39.41859 -38.59183 -36.04270 -34.56819 -34.24086 -32.41922 -32.15081 -31.35696 -29.78001 -27.87238 -27.34761 -25.79744 -24.44083 -24.32389 -22.96480 -22.09648 -21.49559 -21.02644 -18.93859 -18.46610 -18.22150 -17.50487 -17.38962 -16.99479 -16.68291 -16.61102 -16.49395 -16.01422 -15.64187 -15.47309 -15.09202 -14.79578 -14.63106 -14.50793 -14.18965 -13.96399 -13.81766 -13.63759 -13.45015 -13.28562 -13.03071 -12.95290 -12.74746 -12.63754 -12.49247 -12.28453 -12.01436 -11.87564 -11.83112 -11.53332 -11.45316 -11.08021 -10.75270 -10.69785 -10.49378 -10.46978 -10.09975 -10.09331 -8.88500 -7.83908 -5.19397 0.13514 0.19385 1.46722 1.48571 1.57043 1.58143 1.87733 2.50375 2.70576 3.09435 3.34516 3.57005 3.60751 3.62953 3.75828 3.77659 3.85478 3.97138 4.03701 4.05288 4.10273 4.12081 4.20216 4.40066 4.43662 4.45721 4.62535 4.69565 4.71101 4.73356 4.80930 4.84738 4.88182 4.93453 4.98627 5.06860 5.08768 5.23261 5.34300 5.34840 5.47154 5.47454 5.68616 5.75091 5.79396 6.00609 6.21379 6.56056 6.99677 7.11411 7.22679 7.79596 8.43857 9.26579 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.001805 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.012807 B =15504.475199 C =15854.639752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.119 0.881 4 O -0.381 6.381 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.153 4.153 8 C 0.083 3.917 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.161 4.161 12 C 0.508 3.492 13 O -0.576 6.576 14 N -0.711 5.711 15 C 0.145 3.855 16 C -0.093 4.093 17 H 0.094 0.906 18 C -0.124 4.124 19 C 0.183 3.817 20 N -0.629 5.629 21 C -0.240 4.240 22 H 0.086 0.914 23 C -0.070 4.070 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.265 1.265 29 C 0.138 3.862 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.179 0.821 37 H 0.174 0.826 38 H 0.146 0.854 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.013 0.987 45 H 0.002 0.998 46 H 0.245 0.755 47 H 0.053 0.947 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 -2.936 27.136 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.137 0.863 4 O -0.300 6.300 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.172 4.172 8 C -0.073 4.073 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.180 4.180 12 C 0.295 3.705 13 O -0.455 6.455 14 N -0.364 5.364 15 C 0.021 3.979 16 C -0.113 4.113 17 H 0.112 0.888 18 C -0.163 4.163 19 C 0.057 3.943 20 N -0.355 5.355 21 C -0.369 4.369 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.190 1.190 29 C 0.013 3.987 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.177 0.823 36 H 0.196 0.804 37 H 0.191 0.809 38 H 0.164 0.836 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.031 0.969 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.053 -4.250 27.735 28.510 hybrid contribution -0.023 1.687 -1.863 2.514 sum -5.076 -2.563 25.872 26.490 Atomic orbital electron populations 1.22245 0.91310 1.03501 1.05276 1.22041 0.96551 0.96851 0.83307 0.86345 1.88083 1.87024 1.35319 1.19550 1.21609 1.01912 0.91246 0.83252 1.20276 0.93931 0.97182 0.95401 1.22369 1.02135 0.97529 0.95214 1.23235 0.91876 0.95426 0.96788 1.67687 1.04406 1.20577 1.29492 1.23126 1.00592 0.93109 0.90532 1.22342 0.96514 0.99945 0.99235 1.21023 0.79012 0.85087 0.85393 1.90707 1.41942 1.25662 1.87217 1.45860 1.57499 1.28225 1.04832 1.21140 0.98873 0.95579 0.82318 1.22410 1.00732 0.94999 0.93171 0.88816 1.22732 1.01554 0.97303 0.94701 1.20923 0.97404 0.84179 0.91757 1.44804 1.85556 1.03417 1.01718 1.19484 1.41663 0.84968 0.90767 0.89652 1.25678 1.02802 1.01214 0.96609 1.70196 1.57861 1.29831 1.02313 0.85079 0.77211 0.79505 0.77543 1.21666 1.22270 1.18951 1.21765 0.96700 0.95183 0.85083 0.89030 0.92653 0.88853 0.90455 0.88960 0.82273 0.80359 0.80917 0.83581 0.74727 0.92567 0.91029 0.91330 0.89635 0.96871 0.97969 0.94526 0.92837 0.96556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.48 71.98 0.68 -1.09 16 2 C 0.07 1.17 3.13 29.85 0.09 1.26 16 3 H 0.12 1.16 7.79 -2.39 -0.02 1.14 16 4 O -0.38 -7.74 9.51 -129.99 -1.24 -8.97 16 5 C 0.10 1.22 5.92 71.24 0.42 1.64 16 6 C -0.06 -0.94 5.55 -19.67 -0.11 -1.05 16 7 C -0.15 -2.11 9.82 22.36 0.22 -1.89 16 8 C 0.08 1.28 11.18 84.68 0.95 2.23 16 9 N -0.51 -10.06 10.36 -195.84 -2.03 -12.09 16 10 C 0.08 1.42 11.18 84.68 0.95 2.37 16 11 C -0.16 -2.64 9.82 22.36 0.22 -2.42 16 12 C 0.51 12.36 7.18 87.66 0.63 12.99 16 13 O -0.58 -20.16 16.51 15.96 0.26 -19.90 16 14 N -0.71 -14.93 5.41 -463.06 -2.51 -17.44 16 15 C 0.15 3.72 5.12 86.38 0.44 4.16 16 16 C -0.09 -2.75 3.07 -9.40 -0.03 -2.78 16 17 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 18 C -0.12 -4.28 6.42 31.80 0.20 -4.07 16 19 C 0.18 8.84 5.38 86.75 0.47 9.30 16 20 N -0.63 -31.17 3.39 -691.92 -2.35 -33.51 16 21 C -0.24 -13.08 10.28 84.03 0.86 -12.22 16 22 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 24 N -0.95 -57.11 10.31 21.65 0.22 -56.89 16 25 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 29 C 0.14 5.06 6.56 86.85 0.57 5.63 16 30 H 0.09 0.70 7.93 -2.39 -0.02 0.68 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.58 7.87 -2.39 -0.02 0.56 16 33 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 34 H 0.09 0.66 7.83 -2.39 -0.02 0.64 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.42 6.41 8.22 -92.70 -0.76 5.65 16 40 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 43 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.01 0.71 7.38 -2.38 -0.02 0.69 16 45 H 0.00 0.11 7.50 -2.39 -0.02 0.10 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 48 H 0.02 0.63 7.95 -2.38 -0.02 0.61 16 Total: -1.00 -79.97 397.60 1.62 -78.35 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.19 Total: 12.83 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 7.03 Total: 10.57 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.66 Total: -119.93 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.97 Total: -28.87 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -79.97 1.62 -78.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753134925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.177 kcal (2) G-P(sol) polarization free energy of solvation -79.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds