Wall clock time and date at job start Tue Mar 31 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47569 * 2 1 4 4 O 1.42906 * 109.46853 * 119.99975 * 2 1 3 5 5 C 1.35911 * 117.00077 * 276.60102 * 4 2 1 6 6 C 1.39136 * 120.47038 * 5.07316 * 5 4 2 7 7 C 1.38542 * 118.36934 * 179.71209 * 6 5 4 8 8 C 1.38252 * 119.22032 * 0.58505 * 7 6 5 9 9 N 1.31847 * 120.88623 * 359.67623 * 8 7 6 10 10 C 1.31834 * 121.78231 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46992 * 239.99714 * 2 1 3 12 12 O 1.21280 * 119.99520 * 245.00722 * 11 2 1 13 13 N 1.34768 * 119.99670 * 64.72882 * 11 2 1 14 14 C 1.46499 * 119.99733 * 180.27809 * 13 11 2 15 15 H 1.09001 * 109.20740 * 35.63649 * 14 13 11 16 16 C 1.50132 * 109.21033 * 155.00152 * 14 13 11 17 17 C 1.52529 * 105.41574 * 218.02318 * 16 14 13 18 18 C 1.46229 * 114.27734 * 270.59250 * 17 16 14 19 19 N 1.50168 * 107.53504 * 58.40619 * 18 17 16 20 20 C 1.36948 * 120.53669 * 109.60683 * 19 18 17 21 21 H 1.07999 * 119.99754 * 155.04566 * 20 19 18 22 22 C 1.38809 * 119.99816 * 335.05149 * 20 19 18 23 23 N 1.31624 * 120.00390 * 343.15867 * 22 20 19 24 24 Si 1.86804 * 119.99660 * 163.15440 * 22 20 19 25 25 H 1.48497 * 109.46969 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46897 * 120.00117 * 24 22 20 27 27 H 1.48503 * 109.47148 * 239.99847 * 24 22 20 28 28 C 1.43428 * 118.92630 * 289.59089 * 19 18 17 29 29 C 1.54847 * 109.20961 * 276.31990 * 14 13 11 30 30 H 1.09004 * 109.46800 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.46949 * 59.99664 * 1 2 3 32 32 H 1.09000 * 109.47569 * 180.02562 * 1 2 3 33 33 H 1.07999 * 120.81454 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.38618 * 180.31088 * 7 6 5 35 35 H 1.08000 * 119.55555 * 179.70298 * 8 7 6 36 36 H 1.07998 * 119.65594 * 180.02562 * 10 9 8 37 37 H 0.97003 * 120.00627 * 0.27252 * 13 11 2 38 38 H 1.09000 * 110.24789 * 336.99553 * 16 14 13 39 39 H 1.08996 * 110.25105 * 99.04762 * 16 14 13 40 40 H 1.08998 * 108.52074 * 31.83693 * 17 16 14 41 41 H 1.09007 * 108.52065 * 149.50610 * 17 16 14 42 42 H 1.09003 * 109.84980 * 177.91531 * 18 17 16 43 43 H 1.09004 * 109.84709 * 298.90005 * 18 17 16 44 44 H 0.97000 * 119.99533 * 180.02562 * 23 22 20 45 45 H 1.09007 * 108.15752 * 213.28278 * 28 19 18 46 46 H 1.09000 * 108.15400 * 329.84646 * 28 19 18 47 47 H 1.09006 * 109.35641 * 321.00094 * 29 14 13 48 48 H 1.08997 * 109.35356 * 80.58335 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0807 0.0540 2.3123 6 6 1.6065 1.3616 2.3496 7 6 1.6985 2.0614 3.5417 8 6 2.2650 1.4470 4.6430 9 7 2.7099 0.2079 4.5725 10 6 2.6357 -0.4942 3.4592 11 6 2.0323 -0.7105 -1.2305 12 8 2.6528 -1.7468 -1.1214 13 7 1.7871 -0.1972 -2.4522 14 6 2.2702 -0.8910 -3.6486 15 1 2.2106 -1.9674 -3.4875 16 6 1.4063 -0.5181 -4.8185 17 6 1.2611 -1.7958 -5.6389 18 6 2.2990 -1.9808 -6.6523 19 7 3.6242 -1.9905 -5.9461 20 6 4.3480 -3.1483 -5.8406 21 1 5.4198 -3.1056 -5.7148 22 6 3.7040 -4.3768 -5.8955 23 7 2.4019 -4.4460 -5.7156 24 14 4.6853 -5.9318 -6.2249 25 1 6.1198 -5.5859 -6.3914 26 1 4.5304 -6.8664 -5.0813 27 1 4.1856 -6.5792 -7.4644 28 6 4.1199 -0.7675 -5.3842 29 6 3.7452 -0.4962 -3.9060 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1727 1.8180 1.4722 34 1 1.3359 3.0766 3.6086 35 1 2.3438 1.9892 5.5737 36 1 3.0105 -1.5069 3.4401 37 1 1.2908 0.6317 -2.5395 38 1 0.4298 -0.1784 -4.4733 39 1 1.8892 0.2583 -5.4118 40 1 1.2845 -2.6479 -4.9597 41 1 0.2921 -1.7786 -6.1379 42 1 2.1477 -2.9290 -7.1682 43 1 2.2674 -1.1597 -7.3685 44 1 1.9521 -5.3045 -5.7536 45 1 5.2070 -0.7733 -5.4635 46 1 3.7451 0.0596 -5.9871 47 1 3.8788 0.5635 -3.6879 48 1 4.3946 -1.0816 -3.2552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755028239.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:52 Heat of formation + Delta-G solvation = -2.729220 kcal Electronic energy + Delta-G solvation = -29253.034474 eV Core-core repulsion = 25309.606965 eV Total energy + Delta-G solvation = -3943.427509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07231 -39.81113 -38.44815 -37.41146 -34.67886 -32.95551 -32.48152 -31.88442 -31.54575 -30.35705 -29.62628 -26.25034 -25.14338 -24.19348 -23.88283 -23.34972 -22.45099 -20.50031 -19.80913 -19.18652 -18.67012 -17.54734 -17.01222 -16.67595 -16.23154 -15.97245 -15.54781 -15.04084 -14.73095 -14.67793 -14.23948 -14.13486 -13.91502 -13.74206 -13.46664 -13.23257 -13.17179 -12.57290 -12.54716 -12.39925 -12.26518 -11.87792 -11.83610 -11.54120 -11.43134 -11.22632 -10.79072 -10.63160 -10.34486 -10.25745 -10.11429 -10.04456 -9.86739 -9.79493 -9.51342 -9.43464 -9.35716 -8.69484 -8.63160 -8.38345 -6.67180 -5.75588 -3.17204 0.84118 0.94886 2.47555 2.74761 3.41633 3.50291 3.51806 3.51915 3.56077 4.20501 4.30615 4.45432 4.47499 4.54878 4.60559 4.68640 4.79651 4.92306 5.18622 5.25875 5.34252 5.40939 5.45047 5.53285 5.68650 5.69341 5.75603 5.77284 5.83541 5.98375 6.10901 6.23680 6.26451 6.38019 6.44901 6.67693 6.82524 6.87251 6.90556 6.93644 6.99745 7.11111 7.20847 7.59507 7.68902 7.73684 7.78408 7.98648 8.43250 8.47072 9.22813 9.89168 10.41490 11.31969 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002677 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.484985 B =10457.692561 C =11206.260635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 H 0.094 0.906 4 O -0.275 6.275 5 C 0.087 3.913 6 C -0.172 4.172 7 C -0.131 4.131 8 C 0.052 3.948 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.510 3.490 12 O -0.504 6.504 13 N -0.722 5.722 14 C 0.157 3.843 15 H 0.104 0.896 16 C -0.120 4.120 17 C -0.130 4.130 18 C 0.165 3.835 19 N -0.589 5.589 20 C -0.248 4.248 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.162 3.838 29 C -0.152 4.152 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.390 0.610 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.005 0.995 44 H 0.252 0.748 45 H 0.034 0.966 46 H 0.028 0.972 47 H 0.044 0.956 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 16.626 12.554 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.004 3.996 3 H 0.112 0.888 4 O -0.185 6.185 5 C 0.038 3.962 6 C -0.198 4.198 7 C -0.151 4.151 8 C -0.105 4.105 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.293 3.707 12 O -0.377 6.377 13 N -0.375 5.375 14 C 0.055 3.945 15 H 0.122 0.878 16 C -0.159 4.159 17 C -0.169 4.169 18 C 0.042 3.958 19 N -0.310 5.310 20 C -0.377 4.377 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.547 5.547 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.032 3.968 29 C -0.194 4.194 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.224 0.776 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.240 15.078 13.282 21.041 hybrid contribution -0.370 0.306 -0.786 0.920 sum -6.610 15.384 12.497 20.893 Atomic orbital electron populations 1.22341 0.92624 1.04821 1.03567 1.22344 0.95778 0.96899 0.84547 0.88842 1.86293 1.80359 1.37038 1.14838 1.20299 0.96230 0.91303 0.88348 1.21798 1.03677 0.94268 1.00092 1.21992 0.99080 1.01046 0.92958 1.22673 0.97450 0.91495 0.98874 1.67752 1.14706 1.07553 1.25551 1.22303 0.98807 1.01103 0.86022 1.19867 0.80876 0.85912 0.84039 1.90818 1.38506 1.22433 1.85973 1.46418 1.57634 1.27477 1.05961 1.21343 0.93294 0.98691 0.81213 0.87778 1.21368 0.97666 0.99966 0.96851 1.20949 0.97980 0.97095 1.00849 1.20161 0.83855 0.99557 0.92252 1.44256 1.21231 1.05158 1.60342 1.19238 0.90265 0.83652 1.44575 0.91531 1.24939 0.95843 0.97690 1.00974 1.69927 1.07786 1.23847 1.53106 0.86230 0.79528 0.83607 0.77452 1.20427 1.21787 1.21729 1.20348 0.96946 0.89377 0.90100 1.23315 0.95674 0.98502 1.01897 0.90998 0.90021 0.90286 0.84126 0.84502 0.82562 0.81665 0.77631 0.92836 0.91813 0.87768 0.95167 0.89076 0.97654 0.93812 0.94813 0.95350 0.93728 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.10 37.16 0.34 -1.20 16 2 C 0.06 0.75 2.65 -27.88 -0.07 0.67 16 3 H 0.09 0.81 6.43 -51.93 -0.33 0.48 16 4 O -0.27 -3.83 9.36 -39.32 -0.37 -4.19 16 5 C 0.09 1.01 6.60 -39.08 -0.26 0.76 16 6 C -0.17 -1.52 8.28 -39.14 -0.32 -1.85 16 7 C -0.13 -0.99 10.11 -39.46 -0.40 -1.39 16 8 C 0.05 0.46 11.18 -17.54 -0.20 0.26 16 9 N -0.45 -5.18 10.35 -13.13 -0.14 -5.31 16 10 C 0.08 0.92 11.14 -17.38 -0.19 0.72 16 11 C 0.51 8.20 7.13 -10.99 -0.08 8.12 16 12 O -0.50 -11.10 16.17 -14.30 -0.23 -11.33 16 13 N -0.72 -10.28 4.93 -54.25 -0.27 -10.55 16 14 C 0.16 2.87 2.22 -68.38 -0.15 2.72 16 15 H 0.10 2.51 6.27 -51.93 -0.33 2.18 16 16 C -0.12 -2.00 5.34 -28.40 -0.15 -2.15 16 17 C -0.13 -2.65 5.01 -30.19 -0.15 -2.80 16 18 C 0.17 3.72 5.24 -5.21 -0.03 3.69 16 19 N -0.59 -14.20 2.60 -175.09 -0.45 -14.65 16 20 C -0.25 -6.72 9.63 -15.06 -0.14 -6.86 16 21 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 22 C 0.00 0.09 4.97 -17.43 -0.09 0.01 16 23 N -0.90 -24.99 9.31 55.49 0.52 -24.47 16 24 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.16 3.33 5.17 -4.67 -0.02 3.31 16 29 C -0.15 -2.89 5.98 -24.76 -0.15 -3.03 16 30 H 0.07 0.51 6.78 -51.93 -0.35 0.16 16 31 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.14 0.92 5.54 -52.49 -0.29 0.63 16 34 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.39 3.93 8.25 -40.82 -0.34 3.59 16 38 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 39 H 0.06 1.01 6.29 -51.93 -0.33 0.68 16 40 H 0.10 2.55 5.23 -51.93 -0.27 2.28 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 2.32 6.09 -51.93 -0.32 2.00 16 43 H 0.01 0.11 8.12 -51.93 -0.42 -0.31 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.70 7.99 -51.93 -0.42 0.29 16 46 H 0.03 0.52 6.89 -51.93 -0.36 0.17 16 47 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -32.95 375.91 -9.45 -42.40 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.07 Total: 4.53 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.07 Total: 0.98 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.34 Total: -54.99 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.60 Total: -15.52 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.95 -9.45 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755028239.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.668 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds