Wall clock time and date at job start Tue Mar 31 2020 17:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.47038 * 2 1 4 4 C 1.35964 * 117.00304 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.98402 * 0.30366 * 4 3 2 6 6 C 1.38087 * 120.01252 * 180.25536 * 5 4 3 7 7 C 1.38843 * 119.98698 * 359.44243 * 6 5 4 8 8 N 1.40108 * 120.01597 * 180.25968 * 7 6 5 9 9 C 1.34770 * 120.00184 * 144.82097 * 8 7 6 10 10 O 1.21298 * 120.00275 * 4.24169 * 9 8 7 11 11 C 1.50704 * 119.99954 * 184.23802 * 9 8 7 12 12 N 1.46903 * 109.46860 * 179.97438 * 11 9 8 13 13 C 1.46897 * 111.00142 * 294.30324 * 12 11 9 14 14 C 1.53244 * 109.33840 * 172.74598 * 13 12 11 15 15 N 1.47087 * 108.51798 * 53.83015 * 14 13 12 16 16 C 1.36943 * 120.87524 * 128.83580 * 15 14 13 17 17 H 1.08002 * 119.99615 * 215.04379 * 16 15 14 18 18 C 1.38810 * 120.00066 * 35.05161 * 16 15 14 19 19 N 1.31609 * 120.00068 * 355.78691 * 18 16 15 20 20 Si 1.86807 * 119.99551 * 175.78883 * 18 16 15 21 21 H 1.48492 * 109.47217 * 59.99817 * 20 18 16 22 22 H 1.48500 * 109.46751 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47016 * 299.99440 * 20 18 16 24 24 C 1.47072 * 118.24061 * 308.81093 * 15 14 13 25 25 C 1.46901 * 110.99547 * 169.99895 * 12 11 9 26 26 C 1.38848 * 119.96763 * 0.27611 * 7 6 5 27 27 C 1.38086 * 119.98653 * 0.02562 * 26 7 6 28 28 H 1.09002 * 109.46988 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.47327 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47538 * 240.00478 * 2 1 3 32 32 H 1.09000 * 109.47202 * 119.99669 * 2 1 3 33 33 H 1.08001 * 119.99367 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00164 * 179.71680 * 6 5 4 35 35 H 0.97005 * 119.99573 * 324.82220 * 8 7 6 36 36 H 1.09002 * 109.47346 * 300.00162 * 11 9 8 37 37 H 1.08994 * 109.46847 * 60.00320 * 11 9 8 38 38 H 1.08994 * 109.49193 * 292.70473 * 13 12 11 39 39 H 1.09000 * 109.49282 * 52.79013 * 13 12 11 40 40 H 1.08999 * 109.63006 * 294.12264 * 14 13 12 41 41 H 1.08998 * 109.62701 * 173.53533 * 14 13 12 42 42 H 0.97003 * 120.00144 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.63396 * 291.48392 * 24 15 14 44 44 H 1.09003 * 109.79110 * 170.98601 * 24 15 14 45 45 H 1.08989 * 109.49642 * 307.21398 * 25 12 11 46 46 H 1.09006 * 109.49333 * 67.30275 * 25 12 11 47 47 H 1.07998 * 120.00480 * 180.02562 * 26 7 6 48 48 H 1.08002 * 119.99145 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.3543 1.5256 0.0005 5 6 4.1991 0.4253 -0.0053 6 6 5.5681 0.6056 0.0006 7 6 6.0991 1.8885 0.0006 8 7 7.4881 2.0721 0.0011 9 6 8.0314 3.1061 -0.6712 10 8 7.3146 3.9213 -1.2125 11 6 9.5295 3.2495 -0.7506 12 7 9.8660 4.4467 -1.5326 13 6 9.4475 4.2958 -2.9326 14 6 9.6492 5.6247 -3.6686 15 7 11.0422 6.0570 -3.4789 16 6 11.8205 6.4095 -4.5491 17 1 12.8767 6.1839 -4.5463 18 6 11.2520 7.0570 -5.6375 19 7 9.9520 7.2581 -5.6780 20 14 12.3322 7.6427 -7.0445 21 1 13.0355 6.4810 -7.6453 22 1 11.4889 8.2979 -8.0763 23 1 13.3308 8.6143 -6.5306 24 6 11.5769 6.1012 -2.1096 25 6 11.2993 4.7535 -1.4349 26 6 5.2529 2.9893 0.0006 27 6 3.8841 2.8076 0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7860 -0.5726 -0.0099 34 1 6.2257 -0.2512 0.0006 35 1 8.0587 1.4550 0.4854 36 1 9.9391 3.3449 0.2550 37 1 9.9536 2.3694 -1.2337 38 1 10.0473 3.5210 -3.4100 39 1 8.3947 4.0158 -2.9694 40 1 8.9737 6.3761 -3.2595 41 1 9.4495 5.4886 -4.7314 42 1 9.5547 7.7102 -6.4387 43 1 11.0867 6.8982 -1.5505 44 1 12.6515 6.2816 -2.1386 45 1 11.5894 4.8055 -0.3856 46 1 11.8733 3.9723 -1.9333 47 1 5.6653 3.9875 0.0002 48 1 3.2258 3.6638 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174136570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:08 Heat of formation + Delta-G solvation = -1.704757 kcal Electronic energy + Delta-G solvation = -28170.261768 eV Core-core repulsion = 24226.878683 eV Total energy + Delta-G solvation = -3943.383085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73351 -39.77142 -38.05130 -37.10881 -34.49468 -34.18880 -32.09566 -31.38044 -31.05502 -29.80574 -29.24641 -27.59184 -25.13166 -24.39061 -22.78335 -22.47440 -22.44757 -21.79388 -20.21384 -19.04400 -18.52067 -17.68703 -17.00484 -16.65424 -16.37890 -15.91564 -15.39397 -15.01739 -14.58328 -14.49825 -14.25333 -14.03336 -13.81192 -13.62858 -13.49134 -13.32087 -13.17322 -12.92591 -12.88640 -12.65091 -12.55493 -12.29289 -12.02051 -11.65312 -11.39274 -11.23197 -10.99702 -10.83399 -10.79775 -10.48341 -10.19226 -9.99704 -9.96593 -9.92010 -9.65019 -9.34819 -9.09278 -8.40281 -7.85363 -7.77885 -6.45674 -5.71308 -3.23434 1.17424 1.22554 2.67685 2.89011 3.02608 3.41520 3.46868 3.47706 3.65662 4.42247 4.51512 4.54094 4.55189 4.67609 4.70970 4.79883 4.87208 5.06907 5.18577 5.27442 5.32824 5.35837 5.40804 5.46550 5.48979 5.56221 5.64325 5.82568 5.83882 5.92524 5.99282 6.13244 6.16743 6.22098 6.34763 6.41187 6.41936 6.66567 6.77306 6.89714 7.00674 7.23372 7.28643 7.38828 7.62199 7.77703 7.86429 7.95176 8.24059 8.58740 9.31716 9.90618 10.53524 11.35410 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002125 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.662746 B =13175.301392 C =14149.514655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.110 3.890 5 C -0.192 4.192 6 C -0.109 4.109 7 C 0.115 3.885 8 N -0.681 5.681 9 C 0.511 3.489 10 O -0.489 6.489 11 C 0.037 3.963 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.180 3.820 15 N -0.598 5.598 16 C -0.256 4.256 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.150 3.850 25 C 0.045 3.955 26 C -0.079 4.079 27 C -0.132 4.132 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.407 0.593 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.097 0.903 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.028 0.972 47 H 0.149 0.851 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 -18.331 15.906 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.065 3.935 5 C -0.211 4.211 6 C -0.129 4.129 7 C 0.022 3.978 8 N -0.328 5.328 9 C 0.298 3.702 10 O -0.361 6.361 11 C -0.094 4.094 12 N -0.241 5.241 13 C -0.098 4.098 14 C 0.054 3.946 15 N -0.321 5.321 16 C -0.386 4.386 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.023 3.977 25 C -0.084 4.084 26 C -0.099 4.099 27 C -0.151 4.151 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.242 0.758 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.167 0.833 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.108 -17.053 15.500 26.512 hybrid contribution 1.363 -1.093 -0.815 1.928 sum -11.746 -18.146 14.685 26.132 Atomic orbital electron populations 1.21776 0.92817 1.02768 1.03599 1.22753 0.95841 0.82221 1.01257 1.86087 1.19117 1.29000 1.88964 1.18967 0.82178 0.94125 0.98226 1.20962 0.93499 0.97994 1.08659 1.20658 0.94774 0.95472 1.02040 1.17666 0.83190 0.93444 1.03546 1.43588 1.05217 1.31101 1.52903 1.20984 0.91443 0.80242 0.77506 1.90725 1.62401 1.39849 1.43088 1.21944 0.91219 0.95218 1.01056 1.61746 1.17425 1.32084 1.12859 1.23111 0.99533 1.01293 0.85894 1.20976 0.84892 0.89151 0.99592 1.44067 1.10555 1.77271 1.00227 1.19082 0.92182 1.31308 0.96051 0.92031 1.25347 0.95956 0.97906 0.99789 1.69901 1.09058 1.44714 1.30892 0.86375 0.79805 0.78867 0.81697 1.21049 1.21586 1.20874 1.20970 0.97074 0.92541 0.87136 1.22682 0.86477 1.00002 0.99278 1.21215 0.91656 0.99743 0.97300 1.20386 0.94820 0.94886 1.04984 0.91534 0.91445 0.90461 0.92109 0.92178 0.85393 0.85572 0.75771 0.88309 0.92444 0.96474 0.90553 0.95611 0.88530 0.93424 0.95627 0.92574 0.92020 0.95390 0.83348 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.41 10.14 -19.63 -0.20 -3.61 16 4 C 0.11 1.26 6.69 -39.22 -0.26 1.00 16 5 C -0.19 -1.87 9.03 -39.46 -0.36 -2.23 16 6 C -0.11 -1.07 9.96 -39.41 -0.39 -1.46 16 7 C 0.12 1.38 6.30 -83.62 -0.53 0.85 16 8 N -0.68 -7.33 5.34 -9.83 -0.05 -7.38 16 9 C 0.51 7.37 7.33 -10.99 -0.08 7.29 16 10 O -0.49 -9.19 11.79 5.54 0.07 -9.12 16 11 C 0.04 0.51 5.45 -4.97 -0.03 0.48 16 12 N -0.52 -9.60 4.37 -235.76 -1.03 -10.63 16 13 C 0.03 0.65 5.26 -3.70 -0.02 0.63 16 14 C 0.18 4.68 5.36 -3.60 -0.02 4.66 16 15 N -0.60 -15.75 3.04 -172.00 -0.52 -16.28 16 16 C -0.26 -7.24 9.59 -15.06 -0.14 -7.38 16 17 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 18 C 0.01 0.26 5.32 -17.44 -0.09 0.16 16 19 N -0.90 -26.95 10.66 55.49 0.59 -26.36 16 20 Si 0.90 22.08 29.56 -169.99 -5.02 17.06 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.15 3.27 6.69 -3.60 -0.02 3.25 16 25 C 0.04 0.80 5.62 -3.69 -0.02 0.78 16 26 C -0.08 -1.06 8.69 -39.41 -0.34 -1.40 16 27 C -0.13 -1.63 9.98 -39.46 -0.39 -2.02 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 32 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 33 H 0.13 0.93 6.29 -52.49 -0.33 0.60 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.41 2.82 8.82 -40.82 -0.36 2.46 16 36 H 0.10 1.05 7.97 -51.93 -0.41 0.63 16 37 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 1.66 5.77 -51.93 -0.30 1.36 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.78 6.08 -51.93 -0.32 2.46 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 45 H 0.06 0.91 7.99 -51.94 -0.41 0.49 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.15 2.24 6.24 -52.49 -0.33 1.91 16 48 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -34.38 383.04 -9.96 -44.34 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.44 Total: 1.47 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.12 Total: 4.74 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -1.01 Total: -60.65 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.13 Total: -12.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.38 -9.96 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174136570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.633 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds