Wall clock time and date at job start Tue Mar 31 2020 17:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.47038 * 2 1 4 4 C 1.35964 * 117.00304 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.98402 * 0.30366 * 4 3 2 6 6 C 1.38087 * 120.01252 * 180.25536 * 5 4 3 7 7 C 1.38843 * 119.98698 * 359.44243 * 6 5 4 8 8 N 1.40108 * 120.01597 * 180.25968 * 7 6 5 9 9 C 1.34770 * 120.00184 * 144.82097 * 8 7 6 10 10 O 1.21298 * 120.00275 * 4.24169 * 9 8 7 11 11 C 1.50704 * 119.99954 * 184.23802 * 9 8 7 12 12 N 1.46903 * 109.46860 * 179.97438 * 11 9 8 13 13 C 1.46897 * 111.00142 * 294.30324 * 12 11 9 14 14 C 1.53244 * 109.33840 * 172.74598 * 13 12 11 15 15 N 1.47087 * 108.51798 * 53.83015 * 14 13 12 16 16 C 1.36943 * 120.87524 * 128.83580 * 15 14 13 17 17 H 1.08002 * 119.99615 * 215.04379 * 16 15 14 18 18 C 1.38810 * 120.00066 * 35.05161 * 16 15 14 19 19 N 1.31609 * 120.00068 * 355.78691 * 18 16 15 20 20 Si 1.86807 * 119.99551 * 175.78883 * 18 16 15 21 21 H 1.48492 * 109.47217 * 59.99817 * 20 18 16 22 22 H 1.48500 * 109.46751 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47016 * 299.99440 * 20 18 16 24 24 C 1.47072 * 118.24061 * 308.81093 * 15 14 13 25 25 C 1.46901 * 110.99547 * 169.99895 * 12 11 9 26 26 C 1.38848 * 119.96763 * 0.27611 * 7 6 5 27 27 C 1.38086 * 119.98653 * 0.02562 * 26 7 6 28 28 H 1.09002 * 109.46988 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.47327 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47538 * 240.00478 * 2 1 3 32 32 H 1.09000 * 109.47202 * 119.99669 * 2 1 3 33 33 H 1.08001 * 119.99367 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00164 * 179.71680 * 6 5 4 35 35 H 0.97005 * 119.99573 * 324.82220 * 8 7 6 36 36 H 1.09002 * 109.47346 * 300.00162 * 11 9 8 37 37 H 1.08994 * 109.46847 * 60.00320 * 11 9 8 38 38 H 1.08994 * 109.49193 * 292.70473 * 13 12 11 39 39 H 1.09000 * 109.49282 * 52.79013 * 13 12 11 40 40 H 1.08999 * 109.63006 * 294.12264 * 14 13 12 41 41 H 1.08998 * 109.62701 * 173.53533 * 14 13 12 42 42 H 0.97003 * 120.00144 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.63396 * 291.48392 * 24 15 14 44 44 H 1.09003 * 109.79110 * 170.98601 * 24 15 14 45 45 H 1.08989 * 109.49642 * 307.21398 * 25 12 11 46 46 H 1.09006 * 109.49333 * 67.30275 * 25 12 11 47 47 H 1.07998 * 120.00480 * 180.02562 * 26 7 6 48 48 H 1.08002 * 119.99145 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.3543 1.5256 0.0005 5 6 4.1991 0.4253 -0.0053 6 6 5.5681 0.6056 0.0006 7 6 6.0991 1.8885 0.0006 8 7 7.4881 2.0721 0.0011 9 6 8.0314 3.1061 -0.6712 10 8 7.3146 3.9213 -1.2125 11 6 9.5295 3.2495 -0.7506 12 7 9.8660 4.4467 -1.5326 13 6 9.4475 4.2958 -2.9326 14 6 9.6492 5.6247 -3.6686 15 7 11.0422 6.0570 -3.4789 16 6 11.8205 6.4095 -4.5491 17 1 12.8767 6.1839 -4.5463 18 6 11.2520 7.0570 -5.6375 19 7 9.9520 7.2581 -5.6780 20 14 12.3322 7.6427 -7.0445 21 1 13.0355 6.4810 -7.6453 22 1 11.4889 8.2979 -8.0763 23 1 13.3308 8.6143 -6.5306 24 6 11.5769 6.1012 -2.1096 25 6 11.2993 4.7535 -1.4349 26 6 5.2529 2.9893 0.0006 27 6 3.8841 2.8076 0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7860 -0.5726 -0.0099 34 1 6.2257 -0.2512 0.0006 35 1 8.0587 1.4550 0.4854 36 1 9.9391 3.3449 0.2550 37 1 9.9536 2.3694 -1.2337 38 1 10.0473 3.5210 -3.4100 39 1 8.3947 4.0158 -2.9694 40 1 8.9737 6.3761 -3.2595 41 1 9.4495 5.4886 -4.7314 42 1 9.5547 7.7102 -6.4387 43 1 11.0867 6.8982 -1.5505 44 1 12.6515 6.2816 -2.1386 45 1 11.5894 4.8055 -0.3856 46 1 11.8733 3.9723 -1.9333 47 1 5.6653 3.9875 0.0002 48 1 3.2258 3.6638 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174136570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:07 Heat of formation + Delta-G solvation = -25.906196 kcal Electronic energy + Delta-G solvation = -28171.311221 eV Core-core repulsion = 24226.878683 eV Total energy + Delta-G solvation = -3944.432538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69169 -40.72147 -39.40475 -38.25001 -36.01866 -35.45574 -33.31677 -32.67408 -31.88661 -31.58257 -30.43370 -28.92471 -26.79475 -25.11550 -24.40385 -24.18666 -23.30690 -22.80928 -21.22331 -20.84240 -19.30405 -18.80049 -18.52101 -18.00670 -17.02253 -16.97796 -16.80007 -16.40003 -16.15133 -15.69174 -15.59779 -15.25336 -15.22658 -14.79638 -14.66260 -14.58401 -14.34906 -14.26489 -14.01810 -13.77597 -13.25715 -13.20291 -13.18393 -12.92849 -12.74499 -12.67576 -12.65488 -12.35314 -12.02150 -11.93635 -11.85717 -11.73892 -11.68351 -11.51499 -10.91592 -10.62459 -10.55809 -9.99506 -9.23184 -8.71271 -8.55074 -7.86315 -5.43077 0.31086 0.34091 1.45410 1.49019 1.55671 1.62856 1.97472 2.30299 2.49496 2.78730 3.06013 3.30266 3.72817 3.74579 3.84839 3.92514 4.08809 4.16881 4.22320 4.28455 4.33124 4.38055 4.40049 4.40678 4.44857 4.59371 4.63951 4.69917 4.72967 4.75913 4.95926 4.96650 5.00496 5.03262 5.10380 5.20933 5.22590 5.33084 5.35399 5.41677 5.49295 5.60877 5.76000 5.88387 6.11394 6.20408 6.43981 6.48088 6.55449 7.15832 7.25717 7.83329 8.42069 9.18643 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002125 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.662746 B =13175.301392 C =14149.514655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.105 3.895 5 C -0.187 4.187 6 C -0.096 4.096 7 C 0.098 3.902 8 N -0.658 5.658 9 C 0.508 3.492 10 O -0.544 6.544 11 C 0.041 3.959 12 N -0.537 5.537 13 C 0.054 3.946 14 C 0.190 3.810 15 N -0.616 5.616 16 C -0.268 4.268 17 H 0.071 0.929 18 C -0.051 4.051 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.274 1.274 24 C 0.141 3.859 25 C 0.057 3.943 26 C -0.100 4.100 27 C -0.153 4.153 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.429 0.571 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.069 0.931 40 H -0.017 1.017 41 H 0.061 0.939 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.033 0.967 47 H 0.121 0.879 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 -21.871 17.531 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.059 3.941 5 C -0.206 4.206 6 C -0.116 4.116 7 C 0.004 3.996 8 N -0.307 5.307 9 C 0.296 3.704 10 O -0.420 6.420 11 C -0.089 4.089 12 N -0.262 5.262 13 C -0.075 4.075 14 C 0.064 3.936 15 N -0.341 5.341 16 C -0.398 4.398 17 H 0.088 0.912 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.802 3.198 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.199 1.199 24 C 0.016 3.984 25 C -0.072 4.072 26 C -0.120 4.120 27 C -0.172 4.172 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.268 0.732 36 H 0.158 0.842 37 H 0.102 0.898 38 H 0.036 0.964 39 H 0.087 0.913 40 H 0.002 0.998 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.086 0.914 45 H 0.125 0.875 46 H 0.052 0.948 47 H 0.139 0.861 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.626 -20.658 17.196 29.285 hybrid contribution 0.815 -0.046 -1.224 1.471 sum -10.812 -20.703 15.972 28.295 Atomic orbital electron populations 1.21817 0.91835 1.04174 1.02983 1.23087 0.96721 0.80719 1.02507 1.86077 1.18741 1.31508 1.88821 1.19076 0.82948 0.94141 0.97897 1.21337 0.93364 0.98812 1.07073 1.21013 0.95300 0.95412 0.99856 1.17818 0.83400 0.93923 1.04477 1.43302 1.05123 1.30342 1.51900 1.21255 0.91803 0.80239 0.77069 1.90733 1.63525 1.42080 1.45673 1.22064 0.90620 0.93850 1.02378 1.61529 1.18024 1.35629 1.11047 1.22591 0.99230 0.97903 0.87771 1.20587 0.84568 0.90590 0.97872 1.44325 1.10222 1.77678 1.01844 1.19493 0.92719 1.30799 0.96800 0.91161 1.26200 0.97146 0.98426 1.02857 1.70139 1.10889 1.45735 1.31543 0.85246 0.77870 0.78500 0.78207 1.19842 1.22180 1.19947 1.21185 0.97370 0.94922 0.84950 1.22537 0.86053 0.97198 1.01365 1.21071 0.92467 0.99338 0.99107 1.20415 0.94642 0.95835 1.06318 0.91915 0.92331 0.87998 0.91116 0.90468 0.82250 0.81959 0.73183 0.84168 0.89763 0.96399 0.91282 0.99850 0.92102 0.94092 0.97136 0.91395 0.87521 0.94831 0.86125 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.04 0.53 5.46 71.98 0.39 0.93 16 3 O -0.34 -7.04 10.14 -93.14 -0.94 -7.99 16 4 C 0.11 2.34 6.69 22.50 0.15 2.49 16 5 C -0.19 -3.15 9.03 22.35 0.20 -2.95 16 6 C -0.10 -1.59 9.96 22.38 0.22 -1.36 16 7 C 0.10 2.21 6.30 38.11 0.24 2.45 16 8 N -0.66 -12.67 5.34 -303.39 -1.62 -14.30 16 9 C 0.51 14.02 7.33 87.66 0.64 14.66 16 10 O -0.54 -21.18 11.79 -3.08 -0.04 -21.22 16 11 C 0.04 0.98 5.45 85.56 0.47 1.45 16 12 N -0.54 -19.21 4.37 -899.79 -3.93 -23.15 16 13 C 0.05 2.38 5.26 86.39 0.45 2.83 16 14 C 0.19 10.43 5.36 86.35 0.46 10.89 16 15 N -0.62 -33.23 3.04 -698.10 -2.12 -35.35 16 16 C -0.27 -15.35 9.59 84.03 0.81 -14.54 16 17 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 18 C -0.05 -2.98 5.32 84.86 0.45 -2.53 16 19 N -0.94 -58.72 10.66 21.65 0.23 -58.49 16 20 Si 0.97 46.22 29.56 68.60 2.03 48.25 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.14 6.11 6.69 86.35 0.58 6.68 16 25 C 0.06 1.88 5.62 86.39 0.49 2.37 16 26 C -0.10 -2.80 8.69 22.38 0.19 -2.61 16 27 C -0.15 -4.01 9.98 22.35 0.22 -3.79 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.07 0.71 7.65 -2.39 -0.02 0.70 16 32 H 0.08 0.67 7.67 -2.39 -0.02 0.65 16 33 H 0.16 1.64 6.29 -2.91 -0.02 1.62 16 34 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.43 4.25 8.82 -92.70 -0.82 3.43 16 36 H 0.14 2.22 7.97 -2.39 -0.02 2.20 16 37 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 3.13 5.77 -2.39 -0.01 3.11 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.06 3.74 6.08 -2.39 -0.01 3.72 16 42 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 45 H 0.11 2.61 7.99 -2.39 -0.02 2.59 16 46 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.12 4.03 6.24 -2.91 -0.02 4.01 16 48 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -81.09 383.04 0.47 -80.62 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.15 Total: 15.30 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.71 Total: 16.32 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -7.44 Total: -131.29 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.98 Total: -29.20 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -81.09 0.47 -80.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174136570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.718 kcal (2) G-P(sol) polarization free energy of solvation -81.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds