Wall clock time and date at job start Tue Mar 31 2020 17:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47500 * 2 1 4 4 C 1.34783 * 119.99887 * 273.76624 * 3 2 1 5 5 O 1.21560 * 119.99699 * 185.17170 * 4 3 2 6 6 C 1.47822 * 120.00051 * 5.16866 * 4 3 2 7 7 N 1.32854 * 119.78548 * 5.41744 * 6 4 3 8 8 C 1.31375 * 121.70281 * 179.74805 * 7 6 4 9 9 C 1.38768 * 121.06132 * 0.52886 * 8 7 6 10 10 C 1.38303 * 119.44666 * 359.74006 * 9 8 7 11 11 C 1.39348 * 118.43879 * 0.02562 * 10 9 8 12 12 O 1.35649 * 120.53881 * 180.02562 * 11 10 9 13 13 C 1.46504 * 120.00268 * 93.76510 * 3 2 1 14 14 H 1.09002 * 108.31361 * 2.38446 * 13 3 2 15 15 C 1.52572 * 108.51171 * 244.77066 * 13 3 2 16 16 C 1.50875 * 109.35733 * 153.73285 * 15 13 3 17 17 C 1.53947 * 110.09810 * 91.88455 * 16 15 13 18 18 N 1.47606 * 112.14244 * 319.43357 * 17 16 15 19 19 C 1.36932 * 118.64503 * 137.88681 * 18 17 16 20 20 H 1.07997 * 120.00074 * 210.15078 * 19 18 17 21 21 C 1.38810 * 120.00099 * 30.15148 * 19 18 17 22 22 N 1.31621 * 120.00074 * 10.69304 * 21 19 18 23 23 Si 1.86799 * 120.00249 * 190.68490 * 21 19 18 24 24 H 1.48509 * 109.46859 * 90.00515 * 23 21 19 25 25 H 1.48502 * 109.47363 * 209.99992 * 23 21 19 26 26 H 1.48498 * 109.47290 * 330.00589 * 23 21 19 27 27 C 1.44581 * 122.71157 * 317.86950 * 18 17 16 28 28 C 1.47092 * 108.51618 * 120.00279 * 13 3 2 29 29 H 1.09000 * 109.46674 * 59.99847 * 1 2 3 30 30 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47256 * 300.00305 * 1 2 3 32 32 H 1.09007 * 109.47100 * 239.99635 * 2 1 3 33 33 H 1.09002 * 109.47177 * 120.00049 * 2 1 3 34 34 H 1.07998 * 119.47428 * 180.29013 * 8 7 6 35 35 H 1.07997 * 120.28183 * 179.76540 * 9 8 7 36 36 H 1.07999 * 120.78360 * 179.97438 * 10 9 8 37 37 H 0.96700 * 113.99968 * 269.97566 * 12 11 10 38 38 H 1.09004 * 109.48504 * 273.69822 * 15 13 3 39 39 H 1.08994 * 109.49154 * 33.76375 * 15 13 3 40 40 H 1.08993 * 109.36982 * 331.68890 * 16 15 13 41 41 H 1.09007 * 109.36331 * 212.07303 * 16 15 13 42 42 H 1.09000 * 108.95071 * 198.75164 * 17 16 15 43 43 H 1.09001 * 108.94964 * 80.11780 * 17 16 15 44 44 H 0.97001 * 120.00324 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.45089 * 330.68329 * 27 18 17 46 46 H 1.08997 * 109.42978 * 210.74852 * 27 18 17 47 47 H 1.09002 * 109.32322 * 304.31957 * 28 13 3 48 48 H 1.08998 * 109.33003 * 63.79066 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1708 2.0420 -1.1647 5 8 2.6639 3.1530 -1.1731 6 6 1.7382 1.4158 -2.4320 7 7 1.1025 0.2494 -2.4085 8 6 0.6971 -0.3383 -3.5113 9 6 0.9278 0.2343 -4.7541 10 6 1.5905 1.4457 -4.8322 11 6 2.0065 2.0521 -3.6485 12 8 2.6595 3.2407 -3.6755 13 6 2.3411 2.0440 1.2660 14 1 2.1906 1.3292 2.0750 15 6 1.3756 3.2088 1.4628 16 6 1.2267 3.4912 2.9374 17 6 2.2500 4.5533 3.3786 18 7 3.5692 4.3505 2.7483 19 6 4.2494 5.4439 2.2828 20 1 4.9143 5.3466 1.4373 21 6 4.0844 6.6775 2.8975 22 7 3.4470 6.7604 4.0461 23 14 4.7672 8.2199 2.0949 24 1 3.7394 8.8078 1.1985 25 1 5.1300 9.2053 3.1450 26 1 5.9746 7.8730 1.3032 27 6 4.1731 3.0449 2.6026 28 6 3.7602 2.4306 1.2423 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.1794 -1.2841 -3.4500 35 1 0.5924 -0.2617 -5.6529 36 1 1.7819 1.9104 -5.7881 37 1 3.6212 3.1598 -3.7363 38 1 1.7664 4.0938 0.9606 39 1 0.4039 2.9508 1.0420 40 1 1.3936 2.5728 3.5000 41 1 0.2188 3.8561 3.1355 42 1 2.3643 4.5064 4.4616 43 1 1.8757 5.5402 3.1063 44 1 3.3313 7.6224 4.4755 45 1 3.8354 2.3965 3.4111 46 1 5.2581 3.1406 2.6432 47 1 4.3707 1.5497 1.0441 48 1 3.9213 3.1634 0.4517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997994461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:23 Heat of formation + Delta-G solvation = -7.192283 kcal Electronic energy + Delta-G solvation = -30662.780346 eV Core-core repulsion = 26719.159304 eV Total energy + Delta-G solvation = -3943.621042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10412 -40.67919 -38.78032 -38.36793 -36.84316 -35.03851 -33.43652 -33.25065 -32.33912 -31.42981 -30.32697 -27.89180 -26.30028 -25.41991 -24.84742 -24.32028 -23.88021 -21.98332 -21.00914 -20.54878 -19.45571 -18.66674 -18.06256 -17.93436 -17.06643 -16.93020 -16.75644 -16.21259 -15.84543 -15.64850 -15.48228 -15.32824 -15.09508 -14.84355 -14.42134 -14.24060 -14.13155 -13.96067 -13.69994 -13.50423 -13.40898 -13.08739 -12.95078 -12.78550 -12.62797 -12.46277 -12.34812 -12.06723 -12.02321 -11.87710 -11.76811 -11.54332 -11.38687 -11.32059 -10.71936 -10.68650 -10.47052 -10.08102 -9.94199 -9.49350 -8.56560 -7.83749 -5.33423 -0.38716 0.14799 1.40746 1.43907 1.51930 1.83095 2.02979 2.50697 2.75142 3.03453 3.23124 3.29951 3.64230 3.72782 3.88094 3.93159 4.04916 4.12549 4.20713 4.38127 4.44729 4.49473 4.50203 4.54555 4.63874 4.64140 4.78183 4.83249 4.90853 4.99842 5.02305 5.06709 5.09845 5.13055 5.15783 5.22745 5.32144 5.43551 5.46037 5.57514 5.61086 5.67503 5.70521 5.79982 5.89773 6.45105 6.53365 6.62595 6.78662 7.21738 7.29767 7.98545 8.36328 9.20330 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.003876 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.943081 B = 7222.411874 C = 8446.878058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.108 3.892 3 N -0.596 5.596 4 C 0.549 3.451 5 O -0.549 6.549 6 C 0.019 3.981 7 N -0.435 5.435 8 C 0.077 3.923 9 C -0.113 4.113 10 C -0.116 4.116 11 C 0.099 3.901 12 O -0.494 6.494 13 C 0.176 3.824 14 H 0.093 0.907 15 C -0.097 4.097 16 C -0.127 4.127 17 C 0.191 3.809 18 N -0.601 5.601 19 C -0.257 4.257 20 H 0.050 0.950 21 C -0.045 4.045 22 N -0.934 5.934 23 Si 0.959 3.041 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.162 3.838 28 C -0.150 4.150 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.204 0.796 35 H 0.185 0.815 36 H 0.167 0.833 37 H 0.406 0.594 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.002 0.998 43 H 0.030 0.970 44 H 0.248 0.752 45 H 0.051 0.949 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 -22.316 -17.542 29.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.013 4.013 3 N -0.328 5.328 4 C 0.337 3.663 5 O -0.426 6.426 6 C -0.117 4.117 7 N -0.149 5.149 8 C -0.084 4.084 9 C -0.132 4.132 10 C -0.142 4.142 11 C 0.050 3.950 12 O -0.305 6.305 13 C 0.074 3.926 14 H 0.111 0.889 15 C -0.136 4.136 16 C -0.166 4.166 17 C 0.066 3.934 18 N -0.323 5.323 19 C -0.388 4.388 20 H 0.068 0.932 21 C -0.240 4.240 22 N -0.580 5.580 23 Si 0.788 3.212 24 H -0.219 1.219 25 H -0.213 1.213 26 H -0.197 1.197 27 C 0.034 3.966 28 C -0.191 4.191 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.220 0.780 35 H 0.203 0.797 36 H 0.184 0.816 37 H 0.266 0.734 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.020 0.980 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.025 -21.721 -16.531 28.451 hybrid contribution 1.048 1.887 -0.908 2.342 sum -6.977 -19.834 -17.439 27.316 Atomic orbital electron populations 1.21990 0.95266 1.02604 1.00333 1.22066 0.95395 0.80073 1.03752 1.48395 1.64018 1.15398 1.04976 1.18340 0.79077 0.84925 0.84006 1.90857 1.44518 1.20618 1.86631 1.21580 1.02811 0.94062 0.93215 1.68188 1.07882 1.06458 1.32329 1.23708 0.96497 1.00988 0.87169 1.22786 0.95158 0.94060 1.01204 1.22286 0.98213 0.95694 0.97979 1.19797 0.96551 0.85972 0.92662 1.84761 1.24852 1.25089 1.95840 1.19903 0.94158 0.93885 0.84657 0.88904 1.21093 0.97446 0.98397 0.96642 1.21856 0.99245 0.99998 0.95482 1.20737 0.83636 0.95632 0.93374 1.43753 1.16584 1.02259 1.69662 1.19353 1.22127 0.88984 1.08295 0.93240 1.25748 1.00986 1.01156 0.96140 1.70174 1.47343 1.23771 1.16712 0.85390 0.78264 0.80112 0.77446 1.21930 1.21314 1.19690 1.20705 0.95718 0.86103 0.94026 1.21763 0.95851 1.00432 1.01050 0.93354 0.89661 0.94738 0.87485 0.90338 0.77971 0.79729 0.81577 0.73440 0.94559 0.93059 0.91046 0.91494 0.98016 0.95116 0.94245 0.93066 0.94445 0.91773 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.54 71.98 0.69 -2.15 16 2 C 0.11 2.36 5.65 86.38 0.49 2.85 16 3 N -0.60 -18.42 2.26 -812.37 -1.84 -20.25 16 4 C 0.55 19.35 7.02 86.78 0.61 19.96 16 5 O -0.55 -24.50 12.07 17.01 0.21 -24.29 16 6 C 0.02 0.52 6.54 41.93 0.27 0.80 16 7 N -0.43 -8.54 4.01 -184.64 -0.74 -9.28 16 8 C 0.08 0.85 11.17 84.89 0.95 1.80 16 9 C -0.11 -0.99 10.10 22.41 0.23 -0.76 16 10 C -0.12 -1.71 10.13 22.55 0.23 -1.48 16 11 C 0.10 2.43 6.74 22.94 0.15 2.59 16 12 O -0.49 -14.21 11.60 -68.73 -0.80 -15.01 16 13 C 0.18 6.18 1.95 43.01 0.08 6.27 16 14 H 0.09 2.81 6.87 -2.39 -0.02 2.79 16 15 C -0.10 -3.94 4.37 29.76 0.13 -3.81 16 16 C -0.13 -5.05 5.71 30.22 0.17 -4.88 16 17 C 0.19 9.89 4.64 86.49 0.40 10.29 16 18 N -0.60 -32.26 2.26 -698.38 -1.58 -33.84 16 19 C -0.26 -15.42 9.42 84.03 0.79 -14.63 16 20 H 0.05 3.04 7.85 -2.91 -0.02 3.02 16 21 C -0.05 -2.71 4.97 84.86 0.42 -2.29 16 22 N -0.93 -58.08 10.96 21.65 0.24 -57.85 16 23 Si 0.96 48.99 29.57 68.60 2.03 51.02 16 24 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 25 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 27 C 0.16 7.20 5.66 87.37 0.49 7.70 16 28 C -0.15 -5.98 4.83 29.39 0.14 -5.84 16 29 H 0.05 1.10 6.36 -2.39 -0.02 1.08 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 2.16 5.58 -2.38 -0.01 2.15 16 33 H 0.08 1.47 7.79 -2.39 -0.02 1.45 16 34 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.41 8.80 9.06 -74.06 -0.67 8.13 16 38 H 0.04 1.85 6.87 -2.39 -0.02 1.84 16 39 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 40 H 0.07 2.47 7.32 -2.39 -0.02 2.45 16 41 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.00 0.10 7.99 -2.39 -0.02 0.08 16 43 H 0.03 1.81 6.46 -2.39 -0.02 1.79 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.05 2.04 8.07 -2.39 -0.02 2.02 16 46 H 0.04 1.70 7.99 -2.39 -0.02 1.69 16 47 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 2.65 5.89 -2.39 -0.01 2.63 16 Total: -1.00 -81.78 369.67 4.08 -77.71 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.30 Total: 15.37 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.25 Total: 16.42 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -3.92 Total: -121.22 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.59 Total: -39.30 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -81.78 4.08 -77.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997994461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.514 kcal (2) G-P(sol) polarization free energy of solvation -81.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds