Wall clock time and date at job start Tue Mar 31 2020 17:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46771 * 2 1 4 4 C 1.35425 * 116.99743 * 179.97438 * 3 2 1 5 5 N 1.32243 * 119.80280 * 0.27366 * 4 3 2 6 6 C 1.31877 * 121.80453 * 180.26804 * 5 4 3 7 7 C 1.38365 * 121.18170 * 359.73998 * 6 5 4 8 8 C 1.38335 * 119.45802 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.82368 * 180.02562 * 8 7 6 10 10 C 1.39989 * 118.34861 * 0.02562 * 8 7 6 11 11 C 1.47529 * 120.59313 * 180.02562 * 10 8 7 12 12 O 1.21583 * 120.00164 * 89.99739 * 11 10 8 13 13 N 1.34777 * 119.99490 * 269.99189 * 11 10 8 14 14 C 1.46924 * 120.63216 * 0.02562 * 13 11 10 15 15 C 1.53197 * 108.77778 * 126.40920 * 14 13 11 16 16 C 1.53044 * 109.31107 * 54.63560 * 15 14 13 17 17 C 1.53047 * 109.53474 * 298.63624 * 16 15 14 18 18 H 1.09001 * 109.49870 * 301.37720 * 17 16 15 19 19 N 1.46506 * 109.49418 * 181.31821 * 17 16 15 20 20 C 1.36938 * 119.99589 * 155.00033 * 19 17 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99817 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47071 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47211 * 119.99797 * 24 22 20 27 27 H 1.48493 * 109.47327 * 239.99664 * 24 22 20 28 28 C 1.46930 * 120.62702 * 180.02562 * 13 11 10 29 29 H 1.08991 * 109.47114 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46828 * 299.99817 * 1 2 3 32 32 H 1.08996 * 109.47214 * 239.99870 * 2 1 3 33 33 H 1.09002 * 109.47085 * 119.99705 * 2 1 3 34 34 H 1.07994 * 119.41272 * 179.72289 * 6 5 4 35 35 H 1.07999 * 120.26484 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47315 * 269.98245 * 9 8 7 37 37 H 1.09010 * 109.46904 * 29.98109 * 9 8 7 38 38 H 1.08996 * 109.47044 * 149.98007 * 9 8 7 39 39 H 1.08999 * 109.58876 * 6.62509 * 14 13 11 40 40 H 1.09002 * 109.58900 * 246.19507 * 14 13 11 41 41 H 1.09001 * 109.49809 * 294.68451 * 15 14 13 42 42 H 1.08998 * 109.50000 * 174.58431 * 15 14 13 43 43 H 1.08998 * 109.46229 * 178.61591 * 16 15 14 44 44 H 1.09005 * 109.45220 * 58.64480 * 16 15 14 45 45 H 0.96999 * 120.00080 * 334.99523 * 19 17 16 46 46 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58281 * 113.80590 * 28 13 11 48 48 H 1.08990 * 109.58790 * 353.37749 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1509 0.4733 -0.0044 6 6 5.4635 0.6003 0.0011 7 6 6.0625 1.8476 0.0071 8 6 5.2713 2.9823 0.0067 9 6 5.8912 4.3559 0.0126 10 6 3.8805 2.8229 0.0008 11 6 2.9900 3.9991 -0.0004 12 8 2.6273 4.4859 -1.0539 13 7 2.5784 4.5338 1.1663 14 6 3.0085 3.9569 2.4472 15 6 3.6285 5.0654 3.3039 16 6 2.6319 6.2192 3.4372 17 6 2.3254 6.7934 2.0520 18 1 3.2497 7.1380 1.5884 19 7 1.3957 7.9179 2.1837 20 6 1.3616 8.8941 1.2240 21 1 2.0204 8.8352 0.3702 22 6 0.4811 9.9599 1.3490 23 7 -0.3249 10.0293 2.3872 24 14 0.4351 11.2919 0.0402 25 1 1.4290 10.9803 -1.0183 26 1 -0.9230 11.3519 -0.5576 27 1 0.7632 12.6026 0.6561 28 6 1.6910 5.7047 1.1812 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 6.0820 -0.2850 0.0013 35 1 7.1390 1.9344 0.0120 36 1 6.0362 4.6847 1.0416 37 1 6.8541 4.3221 -0.4973 38 1 5.2317 5.0543 -0.5025 39 1 3.7488 3.1775 2.2667 40 1 2.1477 3.5335 2.9647 41 1 4.5406 5.4257 2.8282 42 1 3.8642 4.6722 4.2927 43 1 3.0609 6.9988 4.0667 44 1 1.7107 5.8526 3.8903 45 1 0.8042 7.9710 2.9507 46 1 -0.9405 10.7738 2.4744 47 1 0.7226 5.4240 1.5954 48 1 1.5619 6.0784 0.1656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999794999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:31 Heat of formation + Delta-G solvation = -29.311856 kcal Electronic energy + Delta-G solvation = -29831.203025 eV Core-core repulsion = 25886.622807 eV Total energy + Delta-G solvation = -3944.580218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20752 -39.48382 -38.32446 -37.19411 -34.50635 -33.99809 -32.48401 -32.09349 -31.17165 -30.28940 -28.47175 -28.04322 -25.58470 -24.06637 -23.81193 -23.61566 -21.88856 -21.80789 -20.39836 -19.05093 -18.25151 -17.45582 -17.15885 -17.06537 -16.51573 -15.94488 -15.30198 -14.93359 -14.54597 -14.31979 -14.29332 -14.09090 -13.96774 -13.52557 -13.40974 -13.35618 -13.17247 -12.91159 -12.75095 -12.61106 -12.40752 -12.36489 -12.23149 -12.07809 -11.71463 -11.35463 -11.05470 -10.96713 -10.84652 -10.66211 -10.57073 -10.26463 -10.16494 -9.84237 -9.76317 -9.69888 -9.44206 -9.06117 -8.68989 -8.31119 -6.98924 -5.77914 -3.07579 0.71979 1.00072 2.71080 2.80100 3.18981 3.44922 3.46575 3.51856 3.54111 4.01325 4.43198 4.53125 4.59544 4.67068 4.80554 4.83664 4.88116 4.94167 5.09379 5.13749 5.18210 5.25262 5.29778 5.39822 5.46222 5.49890 5.57979 5.59067 5.63819 5.65918 5.77444 5.81893 5.88565 5.92821 5.99802 6.06593 6.17541 6.18759 6.22217 6.36387 6.50833 6.75708 6.83584 7.01265 7.03994 7.53622 7.67530 7.73182 8.37692 8.41346 9.52221 10.06134 10.41435 11.44427 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.003275 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.200499 B = 8547.593035 C = 9051.863314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 O -0.296 6.296 4 C 0.356 3.644 5 N -0.544 5.544 6 C 0.152 3.848 7 C -0.215 4.215 8 C 0.026 3.974 9 C -0.126 4.126 10 C -0.190 4.190 11 C 0.574 3.426 12 O -0.531 6.531 13 N -0.594 5.594 14 C 0.112 3.888 15 C -0.128 4.128 16 C -0.126 4.126 17 C 0.170 3.830 18 H 0.051 0.949 19 N -0.718 5.718 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.093 3.907 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.062 0.938 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -22.661 0.561 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.203 6.203 4 C 0.176 3.824 5 N -0.269 5.269 6 C -0.004 4.004 7 C -0.236 4.236 8 C 0.018 3.982 9 C -0.182 4.182 10 C -0.197 4.197 11 C 0.360 3.640 12 O -0.408 6.408 13 N -0.327 5.327 14 C -0.012 4.012 15 C -0.167 4.167 16 C -0.164 4.164 17 C 0.058 3.942 18 H 0.069 0.931 19 N -0.359 5.359 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.031 4.031 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.606 -22.873 -0.150 25.650 hybrid contribution 0.079 1.169 -0.407 1.240 sum 11.685 -21.705 -0.557 24.657 Atomic orbital electron populations 1.21831 0.92785 1.02809 1.03791 1.22655 0.95040 0.80654 1.02409 1.86291 1.16298 1.30967 1.86712 1.19647 0.84339 0.88339 0.90056 1.67387 1.06611 1.32259 1.20622 1.22516 0.89088 0.97384 0.91407 1.21800 1.01369 0.92386 1.08011 1.20201 0.90420 0.97102 0.90500 1.20969 1.01543 0.92011 1.03723 1.19815 0.94287 0.92596 1.12952 1.17744 0.79881 0.82322 0.84075 1.90809 1.57068 1.61994 1.30887 1.48194 1.48556 1.31036 1.04872 1.21651 0.99252 0.95739 0.84516 1.21888 0.99213 0.96207 0.99400 1.21830 0.98748 0.97072 0.98780 1.20482 0.93592 0.87566 0.92537 0.93113 1.42386 1.44182 1.22180 1.27105 1.19319 1.16894 0.99869 1.01162 0.90976 1.24741 0.98822 0.99022 0.98087 1.69672 1.25961 1.32591 1.29784 0.86126 0.77401 0.81788 0.80984 1.20419 1.21785 1.21869 1.22818 0.92237 0.84216 1.03853 0.91435 0.90245 0.91450 0.91550 0.91507 0.82045 0.83983 0.89552 0.90131 0.90167 0.91021 0.91456 0.91640 0.91036 0.91345 0.92000 0.78059 0.93528 0.91937 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.07 0.72 6.03 37.16 0.22 0.94 16 3 O -0.30 -4.28 9.57 -17.97 -0.17 -4.45 16 4 C 0.36 4.97 7.51 -16.61 -0.12 4.85 16 5 N -0.54 -6.44 9.21 -12.98 -0.12 -6.56 16 6 C 0.15 1.35 11.17 -17.49 -0.20 1.16 16 7 C -0.22 -1.86 9.79 -39.50 -0.39 -2.25 16 8 C 0.03 0.29 5.81 -103.93 -0.60 -0.31 16 9 C -0.13 -1.29 9.69 36.01 0.35 -0.94 16 10 C -0.19 -2.76 3.66 -104.69 -0.38 -3.14 16 11 C 0.57 10.15 5.30 -12.47 -0.07 10.08 16 12 O -0.53 -11.61 16.52 5.29 0.09 -11.52 16 13 N -0.59 -9.77 2.97 -174.02 -0.52 -10.28 16 14 C 0.11 1.44 6.34 -3.71 -0.02 1.41 16 15 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 16 C -0.13 -1.97 5.35 -26.68 -0.14 -2.11 16 17 C 0.17 3.36 2.92 -67.82 -0.20 3.16 16 18 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 19 N -0.72 -17.82 5.12 -53.32 -0.27 -18.10 16 20 C -0.24 -6.74 9.93 -15.06 -0.15 -6.88 16 21 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 24 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 C 0.09 1.81 6.02 -3.72 -0.02 1.79 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.63 8.10 -51.92 -0.42 0.20 16 38 H 0.08 1.06 7.19 -51.93 -0.37 0.68 16 39 H 0.07 0.84 6.22 -51.93 -0.32 0.51 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.39 10.06 7.80 -40.82 -0.32 9.74 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.09 2.08 7.00 -51.93 -0.36 1.71 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -34.24 392.98 -8.65 -42.89 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.68 Total: 7.09 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.60 Total: 4.63 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.19 Total: -62.26 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.08 Total: -15.97 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.24 -8.65 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999794999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.576 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds