Wall clock time and date at job start Tue Mar 31 2020 17:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46771 * 2 1 4 4 C 1.35425 * 116.99743 * 179.97438 * 3 2 1 5 5 N 1.32243 * 119.80280 * 0.27366 * 4 3 2 6 6 C 1.31877 * 121.80453 * 180.26804 * 5 4 3 7 7 C 1.38365 * 121.18170 * 359.73998 * 6 5 4 8 8 C 1.38335 * 119.45802 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.82368 * 180.02562 * 8 7 6 10 10 C 1.39989 * 118.34861 * 0.02562 * 8 7 6 11 11 C 1.47529 * 120.59313 * 180.02562 * 10 8 7 12 12 O 1.21583 * 120.00164 * 89.99739 * 11 10 8 13 13 N 1.34777 * 119.99490 * 269.99189 * 11 10 8 14 14 C 1.46924 * 120.63216 * 0.02562 * 13 11 10 15 15 C 1.53197 * 108.77778 * 126.40920 * 14 13 11 16 16 C 1.53044 * 109.31107 * 54.63560 * 15 14 13 17 17 C 1.53047 * 109.53474 * 298.63624 * 16 15 14 18 18 H 1.09001 * 109.49870 * 301.37720 * 17 16 15 19 19 N 1.46506 * 109.49418 * 181.31821 * 17 16 15 20 20 C 1.36938 * 119.99589 * 155.00033 * 19 17 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99817 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47071 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47211 * 119.99797 * 24 22 20 27 27 H 1.48493 * 109.47327 * 239.99664 * 24 22 20 28 28 C 1.46930 * 120.62702 * 180.02562 * 13 11 10 29 29 H 1.08991 * 109.47114 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46828 * 299.99817 * 1 2 3 32 32 H 1.08996 * 109.47214 * 239.99870 * 2 1 3 33 33 H 1.09002 * 109.47085 * 119.99705 * 2 1 3 34 34 H 1.07994 * 119.41272 * 179.72289 * 6 5 4 35 35 H 1.07999 * 120.26484 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47315 * 269.98245 * 9 8 7 37 37 H 1.09010 * 109.46904 * 29.98109 * 9 8 7 38 38 H 1.08996 * 109.47044 * 149.98007 * 9 8 7 39 39 H 1.08999 * 109.58876 * 6.62509 * 14 13 11 40 40 H 1.09002 * 109.58900 * 246.19507 * 14 13 11 41 41 H 1.09001 * 109.49809 * 294.68451 * 15 14 13 42 42 H 1.08998 * 109.50000 * 174.58431 * 15 14 13 43 43 H 1.08998 * 109.46229 * 178.61591 * 16 15 14 44 44 H 1.09005 * 109.45220 * 58.64480 * 16 15 14 45 45 H 0.96999 * 120.00080 * 334.99523 * 19 17 16 46 46 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58281 * 113.80590 * 28 13 11 48 48 H 1.08990 * 109.58790 * 353.37749 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1509 0.4733 -0.0044 6 6 5.4635 0.6003 0.0011 7 6 6.0625 1.8476 0.0071 8 6 5.2713 2.9823 0.0067 9 6 5.8912 4.3559 0.0126 10 6 3.8805 2.8229 0.0008 11 6 2.9900 3.9991 -0.0004 12 8 2.6273 4.4859 -1.0539 13 7 2.5784 4.5338 1.1663 14 6 3.0085 3.9569 2.4472 15 6 3.6285 5.0654 3.3039 16 6 2.6319 6.2192 3.4372 17 6 2.3254 6.7934 2.0520 18 1 3.2497 7.1380 1.5884 19 7 1.3957 7.9179 2.1837 20 6 1.3616 8.8941 1.2240 21 1 2.0204 8.8352 0.3702 22 6 0.4811 9.9599 1.3490 23 7 -0.3249 10.0293 2.3872 24 14 0.4351 11.2919 0.0402 25 1 1.4290 10.9803 -1.0183 26 1 -0.9230 11.3519 -0.5576 27 1 0.7632 12.6026 0.6561 28 6 1.6910 5.7047 1.1812 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 6.0820 -0.2850 0.0013 35 1 7.1390 1.9344 0.0120 36 1 6.0362 4.6847 1.0416 37 1 6.8541 4.3221 -0.4973 38 1 5.2317 5.0543 -0.5025 39 1 3.7488 3.1775 2.2667 40 1 2.1477 3.5335 2.9647 41 1 4.5406 5.4257 2.8282 42 1 3.8642 4.6722 4.2927 43 1 3.0609 6.9988 4.0667 44 1 1.7107 5.8526 3.8903 45 1 0.8042 7.9710 2.9507 46 1 -0.9405 10.7738 2.4744 47 1 0.7226 5.4240 1.5954 48 1 1.5619 6.0784 0.1656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999794999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:30 Heat of formation + Delta-G solvation = -53.709272 kcal Electronic energy + Delta-G solvation = -29832.260976 eV Core-core repulsion = 25886.622807 eV Total energy + Delta-G solvation = -3945.638170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19955 -40.73949 -39.23397 -38.65765 -36.24688 -34.95436 -33.92823 -33.09159 -32.78909 -31.24746 -29.97218 -29.07041 -26.84983 -25.90499 -24.80035 -24.56570 -23.29982 -22.70989 -21.78068 -20.37674 -19.16242 -19.12458 -18.61121 -18.11932 -17.51752 -17.19565 -16.74003 -16.18666 -15.81126 -15.66099 -15.53592 -15.25897 -15.11831 -15.02951 -14.92219 -14.23202 -14.19290 -14.00417 -13.86004 -13.75613 -13.59555 -13.43808 -13.21808 -13.12986 -12.94572 -12.89523 -12.55707 -12.51961 -12.19066 -12.07478 -11.93547 -11.77379 -11.72516 -11.40200 -11.36607 -11.10801 -10.68684 -10.50126 -9.81642 -9.56100 -9.04017 -7.99687 -5.28964 -0.13552 0.17501 1.41851 1.43684 1.44977 1.54663 1.89866 1.92255 2.52536 2.61979 3.17653 3.33603 3.50058 3.67373 3.70511 3.84202 3.97123 3.98097 4.02924 4.10890 4.11396 4.15326 4.29035 4.33093 4.38249 4.42306 4.52523 4.57721 4.64548 4.68710 4.77171 4.80502 4.83301 4.86262 4.87390 4.99848 5.05289 5.10455 5.14975 5.22832 5.35004 5.41057 5.42046 5.46321 5.53927 6.16527 6.23027 6.33862 6.72921 7.03278 7.29847 8.01313 8.26918 9.23197 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.003275 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.200499 B = 8547.593035 C = 9051.863314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.327 6.327 4 C 0.341 3.659 5 N -0.551 5.551 6 C 0.159 3.841 7 C -0.197 4.197 8 C 0.021 3.979 9 C -0.124 4.124 10 C -0.220 4.220 11 C 0.574 3.426 12 O -0.590 6.590 13 N -0.591 5.591 14 C 0.110 3.890 15 C -0.117 4.117 16 C -0.117 4.117 17 C 0.171 3.829 18 H 0.037 0.963 19 N -0.729 5.729 20 C -0.244 4.244 21 H 0.066 0.934 22 C -0.067 4.067 23 N -0.963 5.963 24 Si 0.967 3.033 25 H -0.273 1.273 26 H -0.293 1.293 27 H -0.286 1.286 28 C 0.108 3.892 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.207 0.793 35 H 0.185 0.815 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.378 0.622 46 H 0.253 0.747 47 H 0.055 0.945 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.580 -25.266 1.575 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.235 6.235 4 C 0.162 3.838 5 N -0.275 5.275 6 C 0.003 3.997 7 C -0.216 4.216 8 C 0.013 3.987 9 C -0.180 4.180 10 C -0.226 4.226 11 C 0.362 3.638 12 O -0.471 6.471 13 N -0.322 5.322 14 C -0.012 4.012 15 C -0.155 4.155 16 C -0.156 4.156 17 C 0.061 3.939 18 H 0.056 0.944 19 N -0.368 5.368 20 C -0.376 4.376 21 H 0.084 0.916 22 C -0.259 4.259 23 N -0.614 5.614 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.213 1.213 28 C -0.018 4.018 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.223 0.777 35 H 0.202 0.798 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.210 0.790 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.789 -25.529 0.891 29.517 hybrid contribution -0.800 1.839 -0.745 2.140 sum 13.988 -23.691 0.146 27.512 Atomic orbital electron populations 1.21863 0.91954 1.04357 1.02685 1.22842 0.95704 0.79433 1.02952 1.86259 1.17203 1.33005 1.86987 1.19720 0.84464 0.88603 0.90997 1.67496 1.07902 1.31202 1.20948 1.23366 0.88317 0.99245 0.88761 1.22223 1.03090 0.90920 1.05414 1.20454 0.89320 0.98630 0.90319 1.20996 1.01889 0.90693 1.04456 1.19651 0.95061 0.91164 1.16726 1.18342 0.79478 0.82738 0.83214 1.90758 1.59332 1.64008 1.32959 1.48207 1.47667 1.29868 1.06469 1.21919 1.00217 0.96422 0.82638 1.21867 0.97957 0.94266 1.01406 1.21736 1.00071 0.98342 0.95404 1.20622 0.91715 0.86258 0.95313 0.94444 1.42519 1.44968 1.23165 1.26192 1.19554 1.16234 1.00485 1.01339 0.91629 1.25471 0.99000 1.01269 1.00208 1.69797 1.26839 1.33285 1.31432 0.85172 0.77146 0.79295 0.78768 1.19782 1.21977 1.21290 1.22289 0.92751 0.85689 1.01062 0.92906 0.87327 0.92124 0.91404 0.90361 0.77660 0.79774 0.88152 0.87125 0.94142 0.88942 0.90638 0.91005 0.87042 0.91337 0.91742 0.78978 0.93820 0.92659 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 10.28 71.98 0.74 -1.94 16 2 C 0.07 1.35 6.03 71.98 0.43 1.78 16 3 O -0.33 -9.62 9.57 -87.21 -0.83 -10.46 16 4 C 0.34 9.29 7.51 85.13 0.64 9.93 16 5 N -0.55 -11.62 9.21 -308.00 -2.84 -14.46 16 6 C 0.16 2.10 11.17 84.72 0.95 3.05 16 7 C -0.20 -2.49 9.79 22.32 0.22 -2.27 16 8 C 0.02 0.43 5.81 -19.42 -0.11 0.31 16 9 C -0.12 -2.33 9.69 71.24 0.69 -1.64 16 10 C -0.22 -6.30 3.66 -19.91 -0.07 -6.37 16 11 C 0.57 21.30 5.30 86.69 0.46 21.76 16 12 O -0.59 -27.95 16.52 -3.98 -0.07 -28.02 16 13 N -0.59 -20.07 2.97 -822.73 -2.45 -22.52 16 14 C 0.11 2.65 6.34 86.36 0.55 3.20 16 15 C -0.12 -2.52 6.08 30.67 0.19 -2.33 16 16 C -0.12 -3.58 5.35 30.62 0.16 -3.41 16 17 C 0.17 7.00 2.92 45.06 0.13 7.13 16 18 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 19 N -0.73 -37.61 5.12 -322.59 -1.65 -39.26 16 20 C -0.24 -14.13 9.93 84.03 0.83 -13.30 16 21 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 22 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 23 N -0.96 -59.44 13.06 21.65 0.28 -59.16 16 24 Si 0.97 47.89 29.55 68.60 2.03 49.91 16 25 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 C 0.11 4.47 6.02 86.35 0.52 4.99 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 33 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 34 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.36 8.10 -2.38 -0.02 1.34 16 38 H 0.04 1.09 7.19 -2.39 -0.02 1.08 16 39 H 0.09 1.93 6.22 -2.39 -0.01 1.92 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.38 20.44 7.80 -92.71 -0.72 19.72 16 46 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.05 2.41 7.00 -2.39 -0.02 2.39 16 Total: -1.00 -80.76 392.98 1.50 -79.25 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.24 Total: 27.26 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 6.79 Total: 17.44 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -6.65 Total: -135.40 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.90 Total: -38.48 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.91 kcal Total: -80.76 1.50 -79.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999794999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.544 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds