Wall clock time and date at job start Tue Mar 31 2020 18:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.35428 * 117.00405 * 179.97438 * 3 2 1 5 5 N 1.32238 * 119.79628 * 359.72939 * 4 3 2 6 6 C 1.31880 * 121.79690 * 179.70912 * 5 4 3 7 7 C 1.38361 * 121.18471 * 0.56683 * 6 5 4 8 8 C 1.38329 * 119.45952 * 359.72254 * 7 6 5 9 9 C 1.50702 * 120.82704 * 180.02562 * 8 7 6 10 10 C 1.39987 * 118.35009 * 359.97438 * 8 7 6 11 11 C 1.47529 * 120.59982 * 179.97438 * 10 8 7 12 12 O 1.21593 * 119.99880 * 270.02549 * 11 10 8 13 13 N 1.34774 * 120.00202 * 90.02049 * 11 10 8 14 14 C 1.46504 * 119.99762 * 0.02562 * 13 11 10 15 15 C 1.46499 * 120.00317 * 180.02562 * 13 11 10 16 16 H 1.09002 * 110.63640 * 358.31274 * 15 13 11 17 17 C 1.55151 * 110.72196 * 234.97894 * 15 13 11 18 18 C 1.54906 * 101.57956 * 277.13498 * 17 15 13 19 19 N 1.47421 * 104.83449 * 322.99173 * 18 17 15 20 20 C 1.36940 * 125.64892 * 204.09731 * 19 18 17 21 21 H 1.07998 * 119.99716 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00011 * 0.03198 * 20 19 18 23 23 N 1.31619 * 120.00028 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46827 * 90.00440 * 24 22 20 26 26 H 1.48497 * 109.47399 * 210.00354 * 24 22 20 27 27 H 1.48501 * 109.47266 * 330.00695 * 24 22 20 28 28 C 1.47018 * 108.70355 * 24.12464 * 19 18 17 29 29 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 34 34 H 1.08001 * 119.40790 * 180.28821 * 6 5 4 35 35 H 1.08001 * 120.27337 * 179.70142 * 7 6 5 36 36 H 1.09003 * 109.46790 * 269.97761 * 9 8 7 37 37 H 1.08998 * 109.46995 * 29.97329 * 9 8 7 38 38 H 1.08994 * 109.47335 * 149.97896 * 9 8 7 39 39 H 1.08996 * 109.47446 * 90.00148 * 14 13 11 40 40 H 1.09001 * 109.46556 * 209.99750 * 14 13 11 41 41 H 1.08996 * 109.47189 * 329.99428 * 14 13 11 42 42 H 1.09009 * 111.00663 * 35.20737 * 17 15 13 43 43 H 1.09000 * 111.00765 * 159.05828 * 17 15 13 44 44 H 1.09001 * 110.36667 * 204.14775 * 18 17 15 45 45 H 1.09004 * 110.46228 * 81.88073 * 18 17 15 46 46 H 0.96999 * 119.99948 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.88887 * 239.52928 * 28 19 18 48 48 H 1.09001 * 109.88143 * 118.35882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0065 6 6 5.4635 0.6001 0.0015 7 6 6.0626 1.8473 0.0016 8 6 5.2715 2.9820 0.0011 9 6 5.8914 4.3556 0.0005 10 6 3.8807 2.8228 0.0000 11 6 2.9901 3.9990 -0.0001 12 8 2.6227 4.4833 1.0530 13 7 2.5838 4.5366 -1.1672 14 6 3.0261 3.9527 -2.4360 15 6 1.6999 5.7049 -1.1673 16 1 1.4439 5.9930 -0.1477 17 6 0.4212 5.4258 -2.0004 18 6 0.9172 5.7179 -3.4386 19 7 1.8353 6.8626 -3.2960 20 6 2.1538 7.7578 -4.2821 21 1 2.8405 8.5657 -4.0766 22 6 1.5941 7.6269 -5.5456 23 7 0.7568 6.6427 -5.7958 24 14 2.0293 8.8477 -6.8909 25 1 3.2160 8.3589 -7.6379 26 1 0.8813 8.9879 -7.8224 27 1 2.3366 10.1668 -6.2819 28 6 2.3526 6.8834 -1.9200 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 6.0819 -0.2853 0.0019 35 1 7.1391 1.9342 0.0023 36 1 6.0404 4.6874 1.0281 37 1 6.8523 4.3204 -0.5128 38 1 5.2299 5.0526 -0.5139 39 1 2.3163 3.1878 -2.7510 40 1 3.0806 4.7327 -3.1954 41 1 4.0105 3.5032 -2.3055 42 1 0.1076 4.3868 -1.8988 43 1 -0.3841 6.1045 -1.7195 44 1 0.0786 5.9821 -4.0828 45 1 1.4469 4.8547 -3.8417 46 1 0.3660 6.5510 -6.6788 47 1 2.0864 7.8241 -1.4380 48 1 3.4359 6.7629 -1.9294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033296219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:41 Heat of formation + Delta-G solvation = 1.716939 kcal Electronic energy + Delta-G solvation = -30233.463577 eV Core-core repulsion = 26290.228868 eV Total energy + Delta-G solvation = -3943.234709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12916 -39.46996 -38.27008 -37.31035 -34.42894 -33.92705 -32.40097 -31.89874 -30.21734 -29.17003 -28.28203 -27.90103 -26.11890 -24.77623 -23.88138 -23.69147 -21.86164 -20.80806 -20.15253 -18.77631 -18.18265 -17.36365 -17.21526 -16.94499 -16.41557 -16.12059 -15.28943 -14.74088 -14.69329 -14.36414 -14.25761 -13.99527 -13.74904 -13.33962 -13.26920 -12.91021 -12.79072 -12.64277 -12.60153 -12.34007 -12.19727 -12.09321 -11.97407 -11.74957 -11.64720 -11.55937 -11.07111 -10.90785 -10.89118 -10.80541 -10.39731 -10.13893 -10.03564 -9.88414 -9.70804 -9.53936 -9.35899 -8.66966 -8.62652 -8.23059 -6.86531 -5.67968 -3.10100 0.79209 1.07535 2.72842 2.84347 3.24150 3.37891 3.43576 3.45205 3.54779 4.08969 4.46764 4.49048 4.63235 4.73358 4.87768 4.90649 4.94948 5.20545 5.24832 5.32485 5.42415 5.44343 5.45244 5.49315 5.53525 5.57391 5.65430 5.70753 5.73156 5.82649 5.89084 5.94542 5.97742 6.06021 6.22772 6.26144 6.32492 6.39263 6.57976 6.62189 6.72274 7.03652 7.10614 7.46969 7.60179 7.60919 7.71819 7.83707 8.33061 8.38456 9.19098 9.79678 10.44295 11.35372 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003557 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.285267 B = 7869.543525 C = 8595.293845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 O -0.296 6.296 4 C 0.358 3.642 5 N -0.544 5.544 6 C 0.153 3.847 7 C -0.216 4.216 8 C 0.025 3.975 9 C -0.124 4.124 10 C -0.190 4.190 11 C 0.577 3.423 12 O -0.540 6.540 13 N -0.581 5.581 14 C 0.075 3.925 15 C 0.125 3.875 16 H 0.100 0.900 17 C -0.154 4.154 18 C 0.145 3.855 19 N -0.602 5.602 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.128 3.872 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.021 0.979 46 H 0.252 0.748 47 H 0.033 0.967 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -13.874 11.019 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.202 6.202 4 C 0.179 3.821 5 N -0.269 5.269 6 C -0.003 4.003 7 C -0.236 4.236 8 C 0.017 3.983 9 C -0.181 4.181 10 C -0.196 4.196 11 C 0.363 3.637 12 O -0.418 6.418 13 N -0.312 5.312 14 C -0.068 4.068 15 C 0.022 3.978 16 H 0.118 0.882 17 C -0.193 4.193 18 C 0.021 3.979 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.001 3.999 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.576 -14.184 11.334 19.310 hybrid contribution 0.734 0.961 -0.816 1.459 sum 7.310 -13.223 10.517 18.409 Atomic orbital electron populations 1.21828 0.92797 1.02796 1.03761 1.22649 0.95037 0.80674 1.02399 1.86279 1.16291 1.30968 1.86702 1.19619 0.84333 0.88302 0.89874 1.67385 1.06607 1.32248 1.20619 1.22512 0.89103 0.97369 0.91333 1.21784 1.01346 0.92396 1.08073 1.20180 0.90439 0.97093 0.90553 1.20948 1.01488 0.91951 1.03697 1.19748 0.94205 0.92518 1.13092 1.17743 0.79833 0.82226 0.83921 1.90757 1.57491 1.62442 1.31122 1.47737 1.47632 1.30169 1.05669 1.22036 0.98259 1.00104 0.86419 1.22182 0.90397 0.84705 1.00510 0.88188 1.23339 0.95892 1.00545 0.99534 1.22115 0.95638 0.89038 0.91147 1.44544 1.51468 1.30860 1.06045 1.19067 1.21841 1.04991 0.89190 0.90522 1.24763 0.99599 0.98579 0.97515 1.69801 1.33993 1.32141 1.21039 0.86092 0.77306 0.80442 0.81763 1.21687 1.21685 1.20728 1.21634 0.96258 0.94767 0.87227 0.91307 0.91567 0.90276 0.91630 0.91452 0.82045 0.83996 0.89611 0.90069 0.90395 0.92878 0.87761 0.92699 0.91947 0.91007 0.87685 0.96110 0.93747 0.94867 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 2 C 0.07 0.77 6.03 37.16 0.22 1.00 16 3 O -0.30 -4.52 9.57 -17.98 -0.17 -4.69 16 4 C 0.36 5.37 7.51 -16.61 -0.12 5.24 16 5 N -0.54 -7.01 9.21 -12.98 -0.12 -7.13 16 6 C 0.15 1.52 11.17 -17.49 -0.20 1.33 16 7 C -0.22 -2.09 9.79 -39.50 -0.39 -2.48 16 8 C 0.03 0.31 5.53 -103.93 -0.57 -0.26 16 9 C -0.12 -1.37 9.69 36.01 0.35 -1.02 16 10 C -0.19 -2.92 3.94 -104.69 -0.41 -3.33 16 11 C 0.58 10.33 5.28 -12.47 -0.07 10.27 16 12 O -0.54 -11.21 16.47 5.28 0.09 -11.12 16 13 N -0.58 -10.34 2.82 -173.07 -0.49 -10.83 16 14 C 0.07 1.27 8.35 59.85 0.50 1.76 16 15 C 0.13 2.39 3.58 -66.10 -0.24 2.15 16 16 H 0.10 1.92 6.99 -51.93 -0.36 1.56 16 17 C -0.15 -3.01 6.53 -24.59 -0.16 -3.17 16 18 C 0.15 3.38 5.00 -2.53 -0.01 3.37 16 19 N -0.60 -14.83 2.97 -170.08 -0.50 -15.34 16 20 C -0.22 -6.01 10.27 -15.06 -0.15 -6.16 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -26.01 10.09 55.49 0.56 -25.45 16 24 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 C 0.13 2.68 6.24 -3.07 -0.02 2.66 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 34 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 39 H 0.05 0.89 7.99 -51.93 -0.41 0.48 16 40 H 0.10 2.05 5.19 -51.93 -0.27 1.79 16 41 H 0.05 0.83 6.55 -51.93 -0.34 0.49 16 42 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.11 2.81 5.87 -51.93 -0.30 2.50 16 45 H 0.02 0.50 5.55 -51.93 -0.29 0.21 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -32.14 383.63 -8.25 -40.39 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.38 Total: 1.89 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.98 Total: 9.92 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.55 Total: -58.75 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.09 Total: -15.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.14 -8.25 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.104 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds